Wall clock time and date at job start Tue Mar 31 2020 05:09:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50702 * 109.46812 * 2 1 4 4 C 1.38401 * 119.84693 * 89.99863 * 3 2 1 5 5 C 1.50710 * 119.92291 * 0.02562 * 4 3 2 6 6 C 1.37922 * 120.15752 * 180.02562 * 4 3 2 7 7 C 1.39678 * 119.84048 * 359.97438 * 6 4 3 8 8 C 1.47813 * 120.14908 * 180.02562 * 7 6 4 9 9 N 1.32580 * 119.99276 * 316.36784 * 8 7 6 10 10 C 1.31741 * 121.72450 * 179.70685 * 9 8 7 11 11 C 1.38869 * 121.50236 * 0.54365 * 10 9 8 12 12 C 1.36887 * 119.79716 * 359.46934 * 11 10 9 13 13 C 1.41122 * 118.39596 * 0.25257 * 12 11 10 14 14 C 1.40885 * 120.71807 * 179.97438 * 13 12 11 15 15 H 1.08003 * 120.00031 * 152.86114 * 14 13 12 16 16 C 1.40075 * 119.99933 * 332.85496 * 14 13 12 17 17 N 1.30765 * 120.00246 * 345.62123 * 16 14 13 18 18 Si 1.86798 * 119.99779 * 165.61732 * 16 14 13 19 19 H 1.48499 * 109.47367 * 0.02562 * 18 16 14 20 20 H 1.48500 * 109.47009 * 120.00194 * 18 16 14 21 21 H 1.48505 * 109.47466 * 240.00332 * 18 16 14 22 22 C 1.39674 * 119.69939 * 0.27619 * 7 6 4 23 23 C 1.37925 * 119.84311 * 359.49108 * 22 7 6 24 24 C 1.50703 * 119.92350 * 180.22813 * 23 22 7 25 25 H 1.09005 * 109.46782 * 179.97438 * 1 2 3 26 26 H 1.08996 * 109.47274 * 299.99548 * 1 2 3 27 27 H 1.08996 * 109.47129 * 60.00141 * 1 2 3 28 28 H 1.08996 * 109.47274 * 240.00452 * 2 1 3 29 29 H 1.08996 * 109.47129 * 119.99859 * 2 1 3 30 30 H 1.09004 * 109.46714 * 270.02281 * 5 4 3 31 31 H 1.08992 * 109.46907 * 30.01695 * 5 4 3 32 32 H 1.08996 * 109.46745 * 150.02324 * 5 4 3 33 33 H 1.07995 * 120.08336 * 179.97438 * 6 4 3 34 34 H 1.08000 * 119.25468 * 180.28904 * 10 9 8 35 35 H 1.08000 * 120.10095 * 179.74317 * 11 10 9 36 36 H 1.08007 * 120.79999 * 180.27277 * 12 11 10 37 37 H 0.97007 * 120.00361 * 179.97438 * 17 16 14 38 38 H 1.07996 * 120.07887 * 179.69727 * 22 7 6 39 39 H 1.09002 * 109.47123 * 270.26098 * 24 23 22 40 40 H 1.09004 * 109.46620 * 30.25668 * 24 23 22 41 41 H 1.08994 * 109.47063 * 150.25701 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2618 2.0703 1.2004 5 6 2.0094 1.3547 2.5026 6 6 2.7210 3.3708 1.2079 7 6 2.9548 4.0323 0.0001 8 6 3.4474 5.4259 0.0002 9 7 2.9213 6.3148 0.8312 10 6 3.3382 7.5641 0.8641 11 6 4.3442 8.0158 0.0200 12 6 4.9310 7.1500 -0.8630 13 6 4.4834 5.8119 -0.8889 14 6 5.0527 4.8796 -1.7786 15 1 5.0552 3.8284 -1.5307 16 6 5.6155 5.3161 -2.9848 17 7 5.3718 6.5247 -3.4205 18 14 6.7141 4.1716 -3.9710 19 1 6.8307 2.8692 -3.2672 20 1 6.1234 3.9557 -5.3162 21 1 8.0614 4.7799 -4.1138 22 6 2.7160 3.3726 -1.2077 23 6 2.2615 2.0704 -1.2003 24 6 2.0082 1.3553 -2.5024 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5137 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8933 -0.5137 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 0.9794 1.5240 2.8164 31 1 2.1773 0.2862 2.3684 32 1 2.6889 1.7365 3.2645 33 1 2.8993 3.8766 2.1453 34 1 2.8844 8.2538 1.5604 35 1 4.6656 9.0459 0.0633 36 1 5.7179 7.4829 -1.5238 37 1 5.7618 6.8271 -4.2556 38 1 2.8901 3.8799 -2.1451 39 1 0.9782 1.5254 -2.8160 40 1 2.6877 1.7368 -3.2646 41 1 2.1755 0.2866 -2.3685 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240739080.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:20 Heat of formation + Delta-G solvation = 23.092024 kcal Electronic energy + Delta-G solvation = -21628.032593 eV Core-core repulsion = 18664.101560 eV Total energy + Delta-G solvation = -2963.931034 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.40670 -38.12567 -34.25821 -34.03200 -33.04949 -31.00406 -30.58620 -28.71932 -26.75451 -26.17835 -25.54814 -23.57458 -21.64421 -21.27283 -19.98827 -19.17182 -17.42928 -15.86749 -15.65763 -15.41689 -14.89477 -14.37498 -13.97630 -13.75814 -13.28039 -13.19746 -12.92934 -12.85743 -12.52456 -12.41282 -12.22380 -12.12086 -11.88460 -11.61196 -11.56483 -11.46755 -11.30067 -11.10635 -10.77860 -10.71783 -10.63838 -10.24171 -10.12970 -9.72148 -9.45367 -8.45240 -8.07828 -7.99594 -7.78244 -7.27229 -6.90662 -4.53107 1.86740 2.15444 2.61964 2.95418 2.98167 3.04258 3.14388 3.79280 4.43327 4.55345 5.10262 5.19037 5.39831 5.43157 5.44721 5.55772 5.64323 5.76682 5.78580 5.90141 5.93547 5.97393 6.02945 6.09126 6.16779 6.19700 6.25905 6.30562 6.41295 6.44379 6.46585 6.66040 6.83040 6.87144 6.90881 7.03876 7.05970 7.30598 7.34751 7.53521 7.67133 7.75844 7.87733 7.90849 8.36898 8.57923 8.65697 9.56966 9.96627 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014513 B = 0.006699 C = 0.004961 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1928.816597 B = 4178.573717 C = 5643.217937 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.084 4.084 3 C -0.104 4.104 4 C -0.094 4.094 5 C -0.108 4.108 6 C -0.111 4.111 7 C 0.026 3.974 8 C 0.014 3.986 9 N -0.453 5.453 10 C -0.034 4.034 11 C -0.150 4.150 12 C -0.130 4.130 13 C 0.085 3.915 14 C -0.438 4.438 15 H 0.090 0.910 16 C 0.074 3.926 17 N -0.787 5.787 18 Si 0.907 3.093 19 H -0.256 1.256 20 H -0.271 1.271 21 H -0.270 1.270 22 C -0.094 4.094 23 C -0.093 4.093 24 C -0.111 4.111 25 H 0.049 0.951 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.068 0.932 29 H 0.067 0.933 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.114 0.886 34 H 0.120 0.880 35 H 0.098 0.902 36 H 0.126 0.874 37 H 0.284 0.716 38 H 0.132 0.868 39 H 0.062 0.938 40 H 0.063 0.937 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.544 -9.078 2.035 9.956 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 C -0.105 4.105 4 C -0.094 4.094 5 C -0.165 4.165 6 C -0.130 4.130 7 C 0.025 3.975 8 C -0.124 4.124 9 N -0.160 5.160 10 C -0.195 4.195 11 C -0.170 4.170 12 C -0.156 4.156 13 C 0.081 3.919 14 C -0.467 4.467 15 H 0.108 0.892 16 C -0.145 4.145 17 N -0.411 5.411 18 Si 0.731 3.269 19 H -0.179 1.179 20 H -0.197 1.197 21 H -0.195 1.195 22 C -0.113 4.113 23 C -0.093 4.093 24 C -0.167 4.167 25 H 0.068 0.932 26 H 0.072 0.928 27 H 0.073 0.927 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.078 0.922 33 H 0.133 0.867 34 H 0.138 0.862 35 H 0.116 0.884 36 H 0.143 0.857 37 H 0.095 0.905 38 H 0.150 0.850 39 H 0.080 0.920 40 H 0.082 0.918 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.157 -9.166 2.384 10.343 hybrid contribution 1.273 0.269 -1.134 1.726 sum -2.884 -8.897 1.249 9.436 Atomic orbital electron populations 1.21693 0.95421 1.00733 1.02174 1.20544 0.95696 0.93760 1.02096 1.19357 1.03089 0.95771 0.92243 1.19460 1.01290 0.94502 0.94174 1.20758 1.01358 0.99700 0.94674 1.21056 1.00776 0.93373 0.97753 1.18375 0.95138 0.91768 0.92226 1.19534 0.98977 0.92263 1.01654 1.67030 1.26491 1.02458 1.20053 1.21654 1.01599 0.92639 1.03581 1.21429 0.98806 0.98903 0.97877 1.21395 1.01079 0.94084 0.99065 1.18346 0.89588 0.93024 0.90990 1.19665 1.30560 0.95782 1.00688 0.89194 1.26003 0.94853 0.95589 0.98049 1.69764 1.34231 1.17727 1.19415 0.86247 0.79939 0.81325 0.79418 1.17931 1.19650 1.19513 1.21296 0.97898 0.93434 0.98703 1.19514 1.01006 0.94613 0.94168 1.20781 1.01483 0.99621 0.94829 0.93176 0.92755 0.92695 0.91356 0.91459 0.91970 0.91862 0.92214 0.86745 0.86222 0.88363 0.85651 0.90485 0.85017 0.91963 0.91803 0.91897 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.65 9.89 37.16 0.37 -1.28 16 2 C -0.08 -1.08 5.24 -27.88 -0.15 -1.23 16 3 C -0.10 -1.74 5.14 -104.50 -0.54 -2.27 16 4 C -0.09 -1.64 5.87 -104.67 -0.61 -2.26 16 5 C -0.11 -1.47 9.60 36.01 0.35 -1.13 16 6 C -0.11 -2.27 9.31 -39.16 -0.36 -2.63 16 7 C 0.03 0.59 5.25 -104.91 -0.55 0.04 16 8 C 0.01 0.35 6.43 -82.24 -0.53 -0.18 16 9 N -0.45 -11.34 10.15 -9.17 -0.09 -11.44 16 10 C -0.03 -0.79 11.16 -17.36 -0.19 -0.98 16 11 C -0.15 -3.46 10.03 -39.84 -0.40 -3.86 16 12 C -0.13 -3.29 8.72 -38.98 -0.34 -3.63 16 13 C 0.09 2.21 5.55 -106.42 -0.59 1.62 16 14 C -0.44 -10.96 6.77 -37.89 -0.26 -11.21 16 15 H 0.09 2.23 6.42 -52.48 -0.34 1.90 16 16 C 0.07 1.75 5.21 -17.32 -0.09 1.66 16 17 N -0.79 -19.15 10.97 55.55 0.61 -18.54 16 18 Si 0.91 17.79 29.58 -169.99 -5.03 12.76 16 19 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 20 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 21 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 22 C -0.09 -2.01 7.47 -39.16 -0.29 -2.31 16 23 C -0.09 -1.68 5.87 -104.68 -0.61 -2.29 16 24 C -0.11 -1.62 9.59 36.01 0.35 -1.28 16 25 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 28 H 0.07 0.82 5.93 -51.93 -0.31 0.51 16 29 H 0.07 0.79 5.93 -51.93 -0.31 0.49 16 30 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 31 H 0.06 0.75 5.93 -51.93 -0.31 0.44 16 32 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 33 H 0.11 2.34 8.06 -52.49 -0.42 1.92 16 34 H 0.12 2.42 8.06 -52.49 -0.42 1.99 16 35 H 0.10 1.96 8.06 -52.49 -0.42 1.53 16 36 H 0.13 3.19 6.34 -52.48 -0.33 2.86 16 37 H 0.28 6.26 8.30 -40.82 -0.34 5.92 16 38 H 0.13 2.98 6.77 -52.49 -0.36 2.62 16 39 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 40 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 41 H 0.06 0.80 5.93 -51.93 -0.31 0.49 16 LS Contribution 331.73 15.07 5.00 5.00 Total: -1.00 -27.29 331.73 -9.59 -36.87 By element: Atomic # 1 Polarization: 14.16 SS G_CDS: -5.61 Total: 8.55 kcal Atomic # 6 Polarization: -28.75 SS G_CDS: -4.46 Total: -33.21 kcal Atomic # 7 Polarization: -30.49 SS G_CDS: 0.52 Total: -29.98 kcal Atomic # 14 Polarization: 17.79 SS G_CDS: -5.03 Total: 12.76 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.29 -9.59 -36.87 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240739080.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.966 kcal (2) G-P(sol) polarization free energy of solvation -27.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.587 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.874 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.092 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds