Wall clock time and date at job start Tue Mar 31 2020 05:09:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.50702 * 109.46936 * 2 1 4 4 C 1.38323 * 119.87379 * 269.72091 * 3 2 1 5 5 C 1.50694 * 119.93957 * 0.02562 * 4 3 2 6 6 C 1.38017 * 120.11817 * 179.77036 * 4 3 2 7 7 C 1.39348 * 119.87585 * 0.48497 * 6 4 3 8 8 C 1.48368 * 120.11938 * 179.79335 * 7 6 4 9 9 C 1.38894 * 119.61490 * 359.70117 * 8 7 6 10 10 C 1.40851 * 118.76390 * 179.78152 * 9 8 7 11 11 C 1.41526 * 120.98894 * 180.24083 * 10 9 8 12 12 H 1.08002 * 120.00093 * 331.11352 * 11 10 9 13 13 C 1.40044 * 120.00112 * 151.10508 * 11 10 9 14 14 N 1.30736 * 120.00248 * 161.62398 * 13 11 10 15 15 Si 1.86796 * 119.99885 * 341.62428 * 13 11 10 16 16 H 1.48501 * 109.47142 * 95.39250 * 15 13 11 17 17 H 1.48503 * 109.47422 * 215.38936 * 15 13 11 18 18 H 1.48499 * 109.47471 * 335.39096 * 15 13 11 19 19 C 1.41135 * 118.02263 * 0.48914 * 10 9 8 20 20 C 1.37742 * 119.07546 * 359.74833 * 19 10 9 21 21 N 1.31924 * 121.15483 * 0.02562 * 20 19 10 22 22 C 1.39346 * 119.75844 * 359.76930 * 7 6 4 23 23 C 1.38010 * 119.87681 * 0.02562 * 22 7 6 24 24 C 1.50696 * 119.94081 * 179.97438 * 23 22 7 25 25 H 1.08992 * 109.46827 * 60.00088 * 1 2 3 26 26 H 1.09003 * 109.46896 * 300.00474 * 1 2 3 27 27 H 1.08994 * 109.47155 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.46649 * 119.99935 * 2 1 3 29 29 H 1.08992 * 109.47213 * 239.99886 * 2 1 3 30 30 H 1.08997 * 109.47244 * 89.99921 * 5 4 3 31 31 H 1.09005 * 109.47439 * 209.99964 * 5 4 3 32 32 H 1.08996 * 109.47545 * 330.00139 * 5 4 3 33 33 H 1.08000 * 120.05753 * 180.23885 * 6 4 3 34 34 H 1.07997 * 120.61906 * 0.02562 * 9 8 7 35 35 H 0.96995 * 120.00232 * 180.02562 * 14 13 11 36 36 H 1.08003 * 120.46197 * 179.73817 * 19 10 9 37 37 H 1.07996 * 119.42003 * 180.02562 * 20 19 10 38 38 H 1.08010 * 120.06359 * 179.97438 * 22 7 6 39 39 H 1.08996 * 109.47725 * 269.97590 * 24 23 22 40 40 H 1.08999 * 109.47497 * 29.98001 * 24 23 22 41 41 H 1.09009 * 109.47176 * 149.97913 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2675 2.0685 -1.1994 5 6 2.0204 1.3522 -2.5020 6 6 2.7230 3.3713 -1.2053 7 6 2.9556 4.0308 0.0000 8 6 3.4497 5.4298 -0.0001 9 6 3.6844 6.0747 -1.2076 10 6 4.1489 7.4043 -1.1868 11 6 4.3986 8.1079 -2.3891 12 1 4.6923 7.5700 -3.2785 13 6 4.2648 9.5014 -2.4257 14 7 4.8236 10.1867 -3.3887 15 14 3.2879 10.3811 -1.0986 16 1 4.2119 10.8608 -0.0397 17 1 2.5743 11.5390 -1.6946 18 1 2.3009 9.4428 -0.5065 19 6 4.3629 8.0123 0.0688 20 6 4.1069 7.2912 1.2141 21 7 3.6679 6.0485 1.1544 22 6 2.7221 3.3717 1.2053 23 6 2.2625 2.0703 1.1994 24 6 2.0100 1.3560 2.5021 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8899 30 1 0.9921 1.5223 -2.8208 31 1 2.7038 1.7325 -3.2612 32 1 2.1865 0.2835 -2.3662 33 1 2.9026 3.8773 -2.1424 34 1 3.5103 5.5676 -2.1450 35 1 4.7313 11.1519 -3.4138 36 1 4.7225 9.0288 0.1307 37 1 4.2683 7.7511 2.1778 38 1 2.9011 3.8780 2.1424 39 1 2.9179 0.8412 2.8162 40 1 1.7210 2.0803 3.2636 41 1 1.2082 0.6296 2.3687 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240739264.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:23 Heat of formation + Delta-G solvation = 22.735686 kcal Electronic energy + Delta-G solvation = -20969.788012 eV Core-core repulsion = 18005.841526 eV Total energy + Delta-G solvation = -2963.946486 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.77635 -38.40497 -34.65121 -33.89008 -33.40836 -31.46292 -31.04962 -28.72715 -27.00680 -26.69535 -25.71215 -23.93083 -22.05982 -21.35155 -20.14074 -19.66279 -17.50036 -16.14515 -16.01313 -15.42175 -14.91882 -14.50713 -14.33729 -14.04214 -13.47400 -13.44539 -13.19472 -13.08333 -12.97425 -12.79942 -12.67328 -12.50065 -12.23748 -11.94820 -11.74923 -11.65237 -11.18179 -11.07215 -11.02486 -10.87841 -10.64888 -10.47678 -10.36393 -9.86904 -9.44386 -8.72083 -8.32189 -8.21405 -8.16327 -7.31674 -7.11122 -4.75808 1.33871 1.74947 2.50988 2.68835 3.03494 3.13368 3.23856 3.86618 4.04959 4.57951 4.82085 4.93038 4.98183 5.11104 5.16758 5.33719 5.38288 5.46026 5.52263 5.58977 5.65409 5.70701 5.75366 5.81742 5.84400 5.90375 5.93430 6.01482 6.10386 6.19015 6.31174 6.39762 6.42824 6.55150 6.60629 6.72010 6.94615 6.97260 6.98624 7.07318 7.27669 7.38878 7.60116 7.88407 8.16564 8.39665 8.60657 9.29223 9.90058 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026915 B = 0.004116 C = 0.003745 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1040.053433 B = 6800.569251 C = 7475.654369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.092 4.092 4 C -0.088 4.088 5 C -0.113 4.113 6 C -0.110 4.110 7 C -0.016 4.016 8 C 0.161 3.839 9 C -0.237 4.237 10 C 0.109 3.891 11 C -0.439 4.439 12 H 0.094 0.906 13 C 0.087 3.913 14 N -0.796 5.796 15 Si 0.914 3.086 16 H -0.267 1.267 17 H -0.288 1.288 18 H -0.246 1.246 19 C -0.287 4.287 20 C 0.120 3.880 21 N -0.565 5.565 22 C -0.092 4.092 23 C -0.092 4.092 24 C -0.112 4.112 25 H 0.055 0.945 26 H 0.055 0.945 27 H 0.053 0.947 28 H 0.069 0.931 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.126 0.874 34 H 0.112 0.888 35 H 0.288 0.712 36 H 0.108 0.892 37 H 0.128 0.872 38 H 0.131 0.869 39 H 0.065 0.935 40 H 0.064 0.936 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.291 -14.275 5.084 16.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.093 4.093 4 C -0.088 4.088 5 C -0.169 4.169 6 C -0.129 4.129 7 C -0.017 4.017 8 C 0.030 3.970 9 C -0.259 4.259 10 C 0.101 3.899 11 C -0.469 4.469 12 H 0.112 0.888 13 C -0.134 4.134 14 N -0.420 5.420 15 Si 0.740 3.260 16 H -0.193 1.193 17 H -0.215 1.215 18 H -0.169 1.169 19 C -0.310 4.310 20 C -0.035 4.035 21 N -0.279 5.279 22 C -0.110 4.110 23 C -0.092 4.092 24 C -0.168 4.168 25 H 0.074 0.926 26 H 0.074 0.926 27 H 0.072 0.928 28 H 0.087 0.913 29 H 0.090 0.910 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.144 0.856 34 H 0.130 0.870 35 H 0.099 0.901 36 H 0.126 0.874 37 H 0.145 0.855 38 H 0.149 0.851 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -6.377 -14.516 5.687 16.844 hybrid contribution -0.025 1.332 -0.421 1.398 sum -6.402 -13.183 5.266 15.573 Atomic orbital electron populations 1.21723 0.95098 1.01139 1.02311 1.20560 0.95934 0.93293 1.02465 1.19495 1.01603 0.95958 0.92205 1.19530 1.00453 0.94237 0.94571 1.20809 1.01880 0.99882 0.94355 1.21145 0.99941 0.93877 0.97927 1.18715 0.97845 0.92242 0.92928 1.19231 0.96495 0.91704 0.89574 1.21907 1.09739 0.97425 0.96868 1.17863 0.87379 0.91807 0.92838 1.19511 1.38927 0.91468 0.97013 0.88763 1.26186 0.93218 0.97712 0.96270 1.69643 1.32072 1.09410 1.30878 0.86266 0.81095 0.78552 0.80125 1.19288 1.21517 1.16911 1.21952 1.13534 1.01581 0.93888 1.21894 0.94553 0.90135 0.96907 1.67341 1.21449 1.11081 1.28073 1.21151 0.98113 0.93257 0.98494 1.19629 1.00608 0.94497 0.94485 1.20786 1.01565 1.00057 0.94425 0.92551 0.92599 0.92819 0.91288 0.91011 0.91520 0.91694 0.91541 0.85591 0.87031 0.90093 0.87415 0.85489 0.85107 0.91626 0.91744 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.36 9.75 37.16 0.36 -1.00 16 2 C -0.09 -0.89 4.96 -27.88 -0.14 -1.02 16 3 C -0.09 -1.27 5.14 -104.56 -0.54 -1.81 16 4 C -0.09 -1.29 5.87 -104.67 -0.61 -1.90 16 5 C -0.11 -1.28 9.60 36.00 0.35 -0.94 16 6 C -0.11 -1.91 9.06 -39.25 -0.36 -2.27 16 7 C -0.02 -0.32 5.88 -104.90 -0.62 -0.94 16 8 C 0.16 3.66 6.73 -83.04 -0.56 3.10 16 9 C -0.24 -5.62 9.25 -38.35 -0.35 -5.97 16 10 C 0.11 2.77 5.13 -106.56 -0.55 2.22 16 11 C -0.44 -11.64 9.63 -37.65 -0.36 -12.01 16 12 H 0.09 2.59 8.06 -52.49 -0.42 2.17 16 13 C 0.09 2.23 5.42 -17.34 -0.09 2.14 16 14 N -0.80 -20.56 13.92 55.55 0.77 -19.79 16 15 Si 0.91 20.37 24.54 -169.99 -4.17 16.20 16 16 H -0.27 -5.72 6.70 56.52 0.38 -5.34 16 17 H -0.29 -6.16 7.11 56.52 0.40 -5.75 16 18 H -0.25 -5.73 6.85 56.52 0.39 -5.35 16 19 C -0.29 -6.91 7.29 -38.66 -0.28 -7.19 16 20 C 0.12 2.69 11.15 -17.69 -0.20 2.50 16 21 N -0.56 -13.00 9.40 -9.94 -0.09 -13.10 16 22 C -0.09 -1.62 9.22 -39.25 -0.36 -1.98 16 23 C -0.09 -1.36 5.87 -104.67 -0.61 -1.97 16 24 C -0.11 -1.27 9.18 36.00 0.33 -0.93 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.54 7.40 -51.93 -0.38 0.16 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 28 H 0.07 0.65 6.68 -51.93 -0.35 0.31 16 29 H 0.07 0.68 5.92 -51.93 -0.31 0.37 16 30 H 0.07 0.70 8.14 -51.93 -0.42 0.28 16 31 H 0.06 0.71 8.09 -51.93 -0.42 0.29 16 32 H 0.07 0.64 5.93 -51.93 -0.31 0.34 16 33 H 0.13 2.13 6.18 -52.49 -0.32 1.81 16 34 H 0.11 2.45 6.18 -52.49 -0.32 2.13 16 35 H 0.29 6.70 8.29 -40.82 -0.34 6.36 16 36 H 0.11 2.52 4.76 -52.48 -0.25 2.27 16 37 H 0.13 2.42 8.06 -52.49 -0.42 2.00 16 38 H 0.13 2.35 7.53 -52.48 -0.40 1.96 16 39 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 41 H 0.06 0.64 5.83 -51.92 -0.30 0.33 16 LS Contribution 327.21 15.07 4.93 4.93 Total: -1.00 -28.10 327.21 -8.65 -36.75 By element: Atomic # 1 Polarization: 10.47 SS G_CDS: -5.49 Total: 4.98 kcal Atomic # 6 Polarization: -25.38 SS G_CDS: -4.60 Total: -29.98 kcal Atomic # 7 Polarization: -33.56 SS G_CDS: 0.68 Total: -32.88 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -4.17 Total: 16.20 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -28.10 -8.65 -36.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240739264.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.484 kcal (2) G-P(sol) polarization free energy of solvation -28.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.383 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.736 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds