Wall clock time and date at job start Tue Mar 31 2020 05:09:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38328 * 119.87531 * 269.72719 * 3 2 1 5 5 C 1.50700 * 119.93982 * 359.97438 * 4 3 2 6 6 C 1.38015 * 120.11739 * 179.72127 * 4 3 2 7 7 C 1.39341 * 119.88089 * 0.53247 * 6 4 3 8 8 C 1.48384 * 120.12687 * 179.76408 * 7 6 4 9 9 C 1.40034 * 120.82347 * 179.97438 * 8 7 6 10 10 C 1.38512 * 119.42020 * 180.02562 * 9 8 7 11 11 N 1.31475 * 121.14979 * 0.02562 * 10 9 8 12 12 C 1.33653 * 121.78942 * 359.97438 * 11 10 9 13 13 C 1.41423 * 119.77358 * 180.02562 * 12 11 10 14 14 H 1.08003 * 120.00010 * 179.97438 * 13 12 11 15 15 C 1.40032 * 120.00115 * 359.97438 * 13 12 11 16 16 N 1.30736 * 120.00283 * 0.02562 * 15 13 12 17 17 Si 1.86799 * 120.00062 * 180.02562 * 15 13 12 18 18 H 1.48505 * 109.46958 * 359.97438 * 17 15 13 19 19 H 1.48497 * 109.47485 * 119.99767 * 17 15 13 20 20 H 1.48499 * 109.47218 * 240.00184 * 17 15 13 21 21 C 1.39307 * 120.81618 * 359.70287 * 8 7 6 22 22 C 1.39347 * 119.75256 * 359.74232 * 7 6 4 23 23 C 1.38011 * 119.88164 * 0.02562 * 22 7 6 24 24 C 1.50699 * 119.94265 * 179.97438 * 23 22 7 25 25 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 26 26 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 30 30 H 1.08999 * 109.47227 * 89.99504 * 5 4 3 31 31 H 1.09000 * 109.46572 * 209.99986 * 5 4 3 32 32 H 1.09000 * 109.46764 * 329.99614 * 5 4 3 33 33 H 1.08005 * 120.05861 * 180.27665 * 6 4 3 34 34 H 1.08000 * 120.29118 * 0.03338 * 9 8 7 35 35 H 1.08002 * 119.42359 * 179.97438 * 10 9 8 36 36 H 0.97003 * 120.00060 * 180.02562 * 16 15 13 37 37 H 1.07993 * 120.58635 * 359.96704 * 21 8 7 38 38 H 1.08004 * 120.05810 * 179.97438 * 22 7 6 39 39 H 1.08994 * 109.47237 * 269.97640 * 24 23 22 40 40 H 1.09001 * 109.47156 * 29.97905 * 24 23 22 41 41 H 1.09006 * 109.46967 * 149.97609 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2673 2.0686 -1.1994 5 6 2.0212 1.3519 -2.5021 6 6 2.7219 3.3717 -1.2053 7 6 2.9546 4.0312 -0.0001 8 6 3.4483 5.4305 0.0000 9 6 3.6866 6.1073 1.2025 10 6 4.1468 7.4133 1.1687 11 7 4.3633 8.0286 0.0272 12 6 4.1518 7.4278 -1.1478 13 6 4.3994 8.1299 -2.3502 14 1 4.2301 7.6478 -3.3017 15 6 4.8641 9.4502 -2.3071 16 7 5.0695 10.0337 -1.1554 17 14 5.1905 10.3778 -3.8953 18 1 4.8823 9.5005 -5.0532 19 1 4.3309 11.5876 -3.9477 20 1 6.6183 10.7825 -3.9478 21 6 3.6916 6.1015 -1.1964 22 6 2.7215 3.3719 1.2052 23 6 2.2624 2.0704 1.1994 24 6 2.0105 1.3558 2.5020 25 1 -0.3634 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 0.9928 1.5212 -2.8212 31 1 2.7046 1.7328 -3.2610 32 1 2.1882 0.2834 -2.3661 33 1 2.9008 3.8780 -2.1424 34 1 3.5131 5.6152 2.1481 35 1 4.3302 7.9354 2.0961 36 1 5.3911 10.9484 -1.1256 37 1 3.5247 5.6123 -2.1446 38 1 2.9007 3.8782 2.1422 39 1 2.9187 0.8413 2.8158 40 1 1.7215 2.0800 3.2637 41 1 1.2089 0.6292 2.3688 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240740900.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:35 Heat of formation + Delta-G solvation = 31.743243 kcal Electronic energy + Delta-G solvation = -20868.644416 eV Core-core repulsion = 17905.088528 eV Total energy + Delta-G solvation = -2963.555889 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.74869 -38.02092 -34.73139 -33.50423 -33.40197 -31.40373 -30.04585 -28.82146 -27.00309 -26.69873 -25.49232 -23.80149 -21.77667 -21.44305 -20.06020 -19.56118 -17.21028 -16.10024 -16.01116 -15.32425 -14.59929 -14.36642 -14.08227 -13.96490 -13.44534 -13.38861 -13.10110 -12.98235 -12.84328 -12.61055 -12.33709 -12.32844 -12.19207 -11.77963 -11.70406 -11.41417 -11.22655 -11.11801 -11.09240 -10.83773 -10.60752 -10.40281 -10.20090 -9.77369 -9.46618 -8.90129 -8.24266 -7.66929 -7.58327 -7.36069 -6.41250 -4.53902 1.41574 1.72180 2.74365 3.04589 3.08622 3.12863 3.18876 3.93823 4.21388 4.78142 4.81917 4.91569 5.08580 5.12389 5.18756 5.32966 5.44689 5.56670 5.60508 5.67163 5.69708 5.72878 5.82665 5.90032 5.90527 5.91832 5.94940 6.04502 6.07430 6.18161 6.33393 6.42046 6.58380 6.71607 6.74576 6.80989 6.95382 7.01279 7.16392 7.30598 7.36467 7.54481 7.73498 8.00548 8.21541 8.64284 8.90199 10.10122 10.30913 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026939 B = 0.003840 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1039.123101 B = 7290.259090 C = 8211.857291 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.099 4.099 4 C -0.084 4.084 5 C -0.113 4.113 6 C -0.116 4.116 7 C -0.015 4.015 8 C -0.002 4.002 9 C -0.304 4.304 10 C 0.124 3.876 11 N -0.483 5.483 12 C 0.254 3.746 13 C -0.432 4.432 14 H 0.084 0.916 15 C 0.069 3.931 16 N -0.716 5.716 17 Si 0.907 3.093 18 H -0.260 1.260 19 H -0.273 1.273 20 H -0.273 1.273 21 C -0.253 4.253 22 C -0.116 4.116 23 C -0.085 4.085 24 C -0.113 4.113 25 H 0.055 0.945 26 H 0.053 0.947 27 H 0.055 0.945 28 H 0.068 0.932 29 H 0.071 0.929 30 H 0.066 0.934 31 H 0.064 0.936 32 H 0.066 0.934 33 H 0.125 0.875 34 H 0.097 0.903 35 H 0.119 0.881 36 H 0.272 0.728 37 H 0.102 0.898 38 H 0.123 0.877 39 H 0.065 0.935 40 H 0.063 0.937 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.718 -14.974 1.657 16.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.122 4.122 3 C -0.099 4.099 4 C -0.084 4.084 5 C -0.170 4.170 6 C -0.134 4.134 7 C -0.015 4.015 8 C -0.008 4.008 9 C -0.327 4.327 10 C -0.041 4.041 11 N -0.196 5.196 12 C 0.130 3.870 13 C -0.464 4.464 14 H 0.102 0.898 15 C -0.156 4.156 16 N -0.337 5.337 17 Si 0.731 3.269 18 H -0.184 1.184 19 H -0.198 1.198 20 H -0.198 1.198 21 C -0.276 4.276 22 C -0.134 4.134 23 C -0.085 4.085 24 C -0.169 4.169 25 H 0.074 0.926 26 H 0.072 0.928 27 H 0.074 0.926 28 H 0.087 0.913 29 H 0.089 0.911 30 H 0.085 0.915 31 H 0.083 0.917 32 H 0.085 0.915 33 H 0.142 0.858 34 H 0.115 0.885 35 H 0.137 0.863 36 H 0.083 0.917 37 H 0.120 0.880 38 H 0.141 0.859 39 H 0.084 0.916 40 H 0.082 0.918 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.341 -13.897 1.713 14.987 hybrid contribution -0.100 -0.278 -0.578 0.649 sum -5.441 -14.176 1.135 15.227 Atomic orbital electron populations 1.21724 0.95129 1.01121 1.02289 1.20547 0.95908 0.93295 1.02417 1.19456 1.02292 0.96024 0.92176 1.19580 0.99961 0.94297 0.94529 1.20819 1.01858 0.99888 0.94416 1.21159 1.00256 0.93806 0.98149 1.19014 0.96409 0.93425 0.92633 1.18604 0.97357 0.90640 0.94162 1.21341 1.17229 0.98208 0.95909 1.22456 0.93831 0.90994 0.96864 1.68719 1.19038 1.35278 0.96540 1.18561 0.88391 0.88136 0.91939 1.19653 1.37331 0.96752 0.92632 0.89815 1.26067 0.94140 0.98054 0.97369 1.70144 1.26578 1.11506 1.25467 0.86285 0.78721 0.79732 0.82180 1.18391 1.19804 1.19809 1.21864 1.12426 0.97503 0.95771 1.21105 1.00450 0.93886 0.97977 1.19576 1.00132 0.94335 0.94491 1.20798 1.01638 1.00094 0.94394 0.92573 0.92826 0.92618 0.91333 0.91056 0.91518 0.91721 0.91542 0.85759 0.88541 0.86317 0.91665 0.88002 0.85936 0.91582 0.91796 0.91573 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.75 37.16 0.36 -1.01 16 2 C -0.08 -0.89 4.96 -27.88 -0.14 -1.02 16 3 C -0.10 -1.38 5.14 -104.56 -0.54 -1.92 16 4 C -0.08 -1.25 5.88 -104.67 -0.61 -1.86 16 5 C -0.11 -1.31 9.60 36.01 0.35 -0.97 16 6 C -0.12 -2.05 9.10 -39.25 -0.36 -2.41 16 7 C -0.01 -0.29 5.88 -104.90 -0.62 -0.91 16 8 C 0.00 -0.04 5.90 -104.65 -0.62 -0.66 16 9 C -0.30 -6.92 9.52 -38.81 -0.37 -7.29 16 10 C 0.12 3.04 11.17 -17.60 -0.20 2.84 16 11 N -0.48 -13.51 7.85 -11.20 -0.09 -13.60 16 12 C 0.25 7.04 6.55 -85.02 -0.56 6.48 16 13 C -0.43 -11.65 9.14 -37.70 -0.34 -12.00 16 14 H 0.08 2.11 7.85 -52.48 -0.41 1.69 16 15 C 0.07 1.77 5.50 -17.35 -0.10 1.67 16 16 N -0.72 -19.22 11.46 55.55 0.64 -18.58 16 17 Si 0.91 18.64 29.56 -169.99 -5.02 13.62 16 18 H -0.26 -5.23 7.11 56.52 0.40 -4.83 16 19 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 20 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 21 C -0.25 -6.29 9.22 -38.34 -0.35 -6.64 16 22 C -0.12 -2.00 9.10 -39.25 -0.36 -2.36 16 23 C -0.09 -1.25 5.87 -104.67 -0.61 -1.86 16 24 C -0.11 -1.25 9.18 36.01 0.33 -0.92 16 25 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.54 7.40 -51.93 -0.38 0.16 16 28 H 0.07 0.65 6.68 -51.93 -0.35 0.31 16 29 H 0.07 0.68 5.92 -51.93 -0.31 0.38 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 32 H 0.07 0.66 5.93 -51.93 -0.31 0.35 16 33 H 0.12 2.19 6.29 -52.48 -0.33 1.86 16 34 H 0.10 1.92 6.32 -52.49 -0.33 1.59 16 35 H 0.12 2.58 8.06 -52.49 -0.42 2.16 16 36 H 0.27 6.59 8.29 -40.82 -0.34 6.25 16 37 H 0.10 2.34 6.33 -52.49 -0.33 2.01 16 38 H 0.12 2.02 6.29 -52.48 -0.33 1.69 16 39 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 41 H 0.07 0.64 5.83 -51.93 -0.30 0.33 16 LS Contribution 331.57 15.07 5.00 5.00 Total: -1.00 -29.81 331.57 -9.68 -39.49 By element: Atomic # 1 Polarization: 10.39 SS G_CDS: -5.47 Total: 4.92 kcal Atomic # 6 Polarization: -26.11 SS G_CDS: -4.73 Total: -30.84 kcal Atomic # 7 Polarization: -32.73 SS G_CDS: 0.55 Total: -32.18 kcal Atomic # 14 Polarization: 18.64 SS G_CDS: -5.02 Total: 13.62 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.81 -9.68 -39.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240740900.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.235 kcal (2) G-P(sol) polarization free energy of solvation -29.807 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.684 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.492 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.743 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds