Wall clock time and date at job start Tue Mar 31 2020 05:09:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.50694 * 109.47287 * 2 1 4 4 C 1.38413 * 119.84242 * 90.00060 * 3 2 1 5 5 C 1.50697 * 119.92564 * 359.97438 * 4 3 2 6 6 C 1.37916 * 120.15102 * 180.02562 * 4 3 2 7 7 C 1.39695 * 119.84417 * 0.02562 * 6 4 3 8 8 C 1.47817 * 120.14651 * 179.97438 * 7 6 4 9 9 C 1.39678 * 120.65320 * 310.28804 * 8 7 6 10 10 C 1.38390 * 118.47147 * 180.26987 * 9 8 7 11 11 C 1.39054 * 119.72827 * 359.72510 * 10 9 8 12 12 N 1.31279 * 121.33901 * 359.97438 * 11 10 9 13 13 C 1.33691 * 121.63556 * 0.02562 * 12 11 10 14 14 C 1.40826 * 119.93878 * 179.97438 * 13 12 11 15 15 H 1.07993 * 119.99739 * 187.48443 * 14 13 12 16 16 C 1.40154 * 119.99709 * 7.49297 * 14 13 12 17 17 N 1.30685 * 119.99738 * 196.26906 * 16 14 13 18 18 Si 1.86800 * 119.99975 * 16.26313 * 16 14 13 19 19 H 1.48497 * 109.47542 * 269.99819 * 18 16 14 20 20 H 1.48506 * 109.47311 * 30.00597 * 18 16 14 21 21 H 1.48500 * 109.46828 * 149.99995 * 18 16 14 22 22 C 1.39688 * 119.69418 * 0.24666 * 7 6 4 23 23 C 1.37915 * 119.84485 * 359.49702 * 22 7 6 24 24 C 1.50700 * 119.91852 * 180.24911 * 23 22 7 25 25 H 1.08996 * 109.46794 * 300.00080 * 1 2 3 26 26 H 1.08993 * 109.46658 * 59.99809 * 1 2 3 27 27 H 1.09000 * 109.47159 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.46794 * 239.99919 * 2 1 3 29 29 H 1.09003 * 109.46814 * 120.00126 * 2 1 3 30 30 H 1.08999 * 109.47224 * 270.02036 * 5 4 3 31 31 H 1.09002 * 109.47015 * 30.02141 * 5 4 3 32 32 H 1.09003 * 109.47158 * 150.02079 * 5 4 3 33 33 H 1.07997 * 120.07868 * 179.97438 * 6 4 3 34 34 H 1.08002 * 120.75986 * 359.97157 * 9 8 7 35 35 H 1.08005 * 120.13407 * 179.70700 * 10 9 8 36 36 H 1.08006 * 119.32817 * 179.97438 * 11 10 9 37 37 H 0.97003 * 120.00574 * 355.61697 * 17 16 14 38 38 H 1.08001 * 120.07423 * 179.72274 * 22 7 6 39 39 H 1.08997 * 109.47649 * 270.25245 * 24 23 22 40 40 H 1.08994 * 109.47348 * 30.26048 * 24 23 22 41 41 H 1.09009 * 109.46572 * 150.25479 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.2621 2.0701 1.2006 5 6 2.0086 1.3549 2.5026 6 6 2.7213 3.3705 1.2080 7 6 2.9542 4.0325 0.0001 8 6 3.4459 5.4265 0.0003 9 6 2.8187 6.4027 0.7777 10 6 3.3130 7.6948 0.7394 11 6 4.4137 7.9886 -0.0580 12 7 5.0000 7.0625 -0.7806 13 6 4.5675 5.7975 -0.7842 14 6 5.2232 4.8329 -1.5735 15 1 4.8055 3.8420 -1.6728 16 6 6.4178 5.1590 -2.2299 17 7 6.8590 4.4008 -3.1986 18 14 7.3792 6.6773 -1.7201 19 1 6.9161 7.8453 -2.5115 20 1 7.1601 6.9399 -0.2750 21 1 8.8261 6.4534 -1.9686 22 6 2.7148 3.3729 -1.2078 23 6 2.2607 2.0707 -1.2004 24 6 2.0073 1.3556 -2.5025 25 1 -0.3633 0.5138 0.8900 26 1 -0.3632 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 0.9786 1.5252 2.8161 31 1 2.1757 0.2862 2.3686 32 1 2.6881 1.7362 3.2649 33 1 2.8997 3.8762 2.1455 34 1 1.9645 6.1560 1.3909 35 1 2.8457 8.4717 1.3263 36 1 4.7939 8.9992 -0.0833 37 1 6.3946 3.5788 -3.4212 38 1 2.8885 3.8803 -2.1452 39 1 0.9772 1.5253 -2.8158 40 1 2.6865 1.7372 -3.2648 41 1 2.1750 0.2868 -2.3687 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240740909.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:25 Heat of formation + Delta-G solvation = 15.840131 kcal Electronic energy + Delta-G solvation = -21642.690347 eV Core-core repulsion = 18678.444847 eV Total energy + Delta-G solvation = -2964.245499 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 1.10 seconds Orbital eigenvalues (eV) -39.60446 -38.35952 -34.43294 -33.91234 -33.20316 -31.48285 -30.84070 -28.80944 -26.87252 -26.36089 -25.46847 -23.66122 -21.93835 -21.08008 -20.15237 -19.33464 -18.39182 -15.96886 -15.77346 -15.42172 -14.92789 -14.63534 -13.94835 -13.82083 -13.39780 -13.24371 -13.07271 -12.97138 -12.68148 -12.51510 -12.47357 -12.24024 -11.99728 -11.94266 -11.86944 -11.66745 -11.14685 -10.88316 -10.81132 -10.78988 -10.34772 -10.19188 -9.97357 -9.73608 -9.16603 -8.76344 -8.22264 -7.99190 -7.89103 -7.37745 -7.31064 -4.79083 1.72243 1.95599 2.56376 2.68660 3.52438 3.61449 3.91643 4.26959 4.34698 4.55012 4.98050 5.07424 5.28098 5.28851 5.37920 5.45250 5.51636 5.63770 5.65704 5.73678 5.78193 5.83651 5.86080 5.89633 5.95580 5.97110 6.05787 6.15249 6.16931 6.26287 6.30051 6.32356 6.50675 6.70408 6.71840 6.84746 7.11080 7.13700 7.18168 7.32161 7.39598 7.50666 7.62811 7.71405 8.06388 8.25229 8.59099 9.45037 9.89532 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018668 B = 0.005867 C = 0.004927 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1499.525450 B = 4771.678017 C = 5681.510297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.085 4.085 3 C -0.107 4.107 4 C -0.086 4.086 5 C -0.110 4.110 6 C -0.129 4.129 7 C 0.023 3.977 8 C -0.222 4.222 9 C -0.023 4.023 10 C -0.320 4.320 11 C 0.155 3.845 12 N -0.568 5.568 13 C 0.258 3.742 14 C -0.467 4.467 15 H 0.097 0.903 16 C 0.048 3.952 17 N -0.791 5.791 18 Si 1.142 2.858 19 H -0.284 1.284 20 H -0.279 1.279 21 H -0.327 1.327 22 C -0.108 4.108 23 C -0.085 4.085 24 C -0.112 4.112 25 H 0.053 0.947 26 H 0.054 0.946 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.060 0.940 33 H 0.113 0.887 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.127 0.873 37 H 0.285 0.715 38 H 0.123 0.877 39 H 0.063 0.937 40 H 0.063 0.937 41 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.033 -6.221 5.529 12.283 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.121 4.121 3 C -0.107 4.107 4 C -0.086 4.086 5 C -0.167 4.167 6 C -0.147 4.147 7 C 0.023 3.977 8 C -0.226 4.226 9 C -0.047 4.047 10 C -0.343 4.343 11 C -0.010 4.010 12 N -0.285 5.285 13 C 0.137 3.863 14 C -0.497 4.497 15 H 0.115 0.885 16 C -0.175 4.175 17 N -0.412 5.412 18 Si 0.974 3.026 19 H -0.211 1.211 20 H -0.206 1.206 21 H -0.259 1.259 22 C -0.126 4.126 23 C -0.085 4.085 24 C -0.169 4.169 25 H 0.072 0.928 26 H 0.073 0.927 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.081 0.919 31 H 0.083 0.917 32 H 0.079 0.921 33 H 0.131 0.869 34 H 0.120 0.880 35 H 0.121 0.879 36 H 0.144 0.856 37 H 0.097 0.903 38 H 0.141 0.859 39 H 0.082 0.918 40 H 0.082 0.918 41 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -7.033 -5.312 4.541 9.914 hybrid contribution -2.180 -1.063 0.861 2.574 sum -9.213 -6.375 5.402 12.438 Atomic orbital electron populations 1.21694 0.95351 1.00877 1.02082 1.20550 0.95718 0.93626 1.02255 1.19360 1.03343 0.95884 0.92153 1.19474 1.00494 0.94378 0.94263 1.20781 1.01360 0.99955 0.94581 1.21059 1.02301 0.93990 0.97396 1.18594 0.94145 0.92889 0.92104 1.19217 1.03507 0.92291 1.07600 1.20990 0.96314 0.92780 0.94597 1.21067 1.04959 0.96985 1.11301 1.22207 0.91245 0.97015 0.90494 1.66793 1.32868 1.02051 1.26789 1.18479 0.89467 0.89142 0.89209 1.21015 1.06448 0.99324 1.22917 0.88482 1.27804 0.95785 1.03940 0.90018 1.70604 1.40325 1.11046 1.19197 0.82141 0.70410 0.72269 0.77747 1.21129 1.20647 1.25945 1.21201 0.99338 0.93806 0.98296 1.19552 1.00151 0.94436 0.94322 1.20801 1.01494 0.99841 0.94731 0.92793 0.92728 0.93033 0.91275 0.91361 0.91876 0.91677 0.92094 0.86912 0.88024 0.87887 0.85568 0.90318 0.85934 0.91849 0.91785 0.91702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.55 9.90 37.16 0.37 -1.19 16 2 C -0.08 -1.05 5.24 -27.88 -0.15 -1.20 16 3 C -0.11 -1.72 5.14 -104.50 -0.54 -2.26 16 4 C -0.09 -1.42 5.87 -104.68 -0.61 -2.03 16 5 C -0.11 -1.40 9.60 36.00 0.35 -1.05 16 6 C -0.13 -2.44 9.20 -39.16 -0.36 -2.80 16 7 C 0.02 0.50 5.07 -104.89 -0.53 -0.03 16 8 C -0.22 -5.19 5.54 -104.07 -0.58 -5.76 16 9 C -0.02 -0.48 9.66 -38.99 -0.38 -0.86 16 10 C -0.32 -6.54 10.10 -39.22 -0.40 -6.94 16 11 C 0.15 3.39 11.17 -17.49 -0.20 3.19 16 12 N -0.57 -14.34 4.97 -10.91 -0.05 -14.39 16 13 C 0.26 6.68 6.30 -84.71 -0.53 6.14 16 14 C -0.47 -12.43 8.49 -37.88 -0.32 -12.75 16 15 H 0.10 2.58 5.20 -52.49 -0.27 2.30 16 16 C 0.05 1.28 5.52 -17.32 -0.10 1.18 16 17 N -0.79 -21.09 13.65 55.56 0.76 -20.33 16 18 Si 1.14 27.71 25.94 -169.99 -4.41 23.30 16 19 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.28 -6.85 6.52 56.52 0.37 -6.48 16 21 H -0.33 -7.78 7.11 56.52 0.40 -7.38 16 22 C -0.11 -2.22 7.20 -39.16 -0.28 -2.51 16 23 C -0.08 -1.48 5.87 -104.68 -0.61 -2.10 16 24 C -0.11 -1.61 9.59 36.01 0.35 -1.27 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.82 5.93 -51.93 -0.31 0.51 16 29 H 0.07 0.78 5.93 -51.93 -0.31 0.47 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.73 5.93 -51.93 -0.31 0.43 16 32 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 33 H 0.11 2.01 8.05 -52.49 -0.42 1.59 16 34 H 0.10 1.89 8.06 -52.49 -0.42 1.47 16 35 H 0.10 1.79 8.06 -52.48 -0.42 1.37 16 36 H 0.13 2.33 8.06 -52.48 -0.42 1.91 16 37 H 0.29 7.30 8.72 -40.82 -0.36 6.94 16 38 H 0.12 2.68 7.18 -52.49 -0.38 2.30 16 39 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 40 H 0.06 0.95 8.08 -51.93 -0.42 0.53 16 41 H 0.06 0.82 5.93 -51.92 -0.31 0.51 16 LS Contribution 328.66 15.07 4.95 4.95 Total: -1.00 -28.26 328.66 -8.99 -37.24 By element: Atomic # 1 Polarization: 7.15 SS G_CDS: -5.71 Total: 1.44 kcal Atomic # 6 Polarization: -27.69 SS G_CDS: -4.52 Total: -32.22 kcal Atomic # 7 Polarization: -35.43 SS G_CDS: 0.70 Total: -34.72 kcal Atomic # 14 Polarization: 27.71 SS G_CDS: -4.41 Total: 23.30 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -28.26 -8.99 -37.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240740909.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.085 kcal (2) G-P(sol) polarization free energy of solvation -28.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.10 seconds