Wall clock time and date at job start Tue Mar 31 2020 05:09:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47382 * 2 1 4 4 C 1.38322 * 119.87902 * 269.72985 * 3 2 1 5 5 C 1.50701 * 119.93949 * 359.97212 * 4 3 2 6 6 C 1.38022 * 120.11835 * 179.72342 * 4 3 2 7 7 C 1.39325 * 119.87652 * 0.54580 * 6 4 3 8 8 C 1.48416 * 120.12078 * 179.75209 * 7 6 4 9 9 C 1.39699 * 120.41591 * 179.97438 * 8 7 6 10 10 N 1.31914 * 121.15681 * 179.97438 * 9 8 7 11 11 C 1.31522 * 122.11621 * 0.02562 * 10 9 8 12 12 C 1.40777 * 120.66635 * 359.97438 * 11 10 9 13 13 C 1.41440 * 120.60424 * 180.02562 * 12 11 10 14 14 H 1.07999 * 119.99541 * 23.40542 * 13 12 11 15 15 C 1.39931 * 120.00314 * 203.39955 * 13 12 11 16 16 N 1.30830 * 119.99748 * 17.39556 * 15 13 12 17 17 Si 1.86796 * 120.00404 * 197.39387 * 15 13 12 18 18 H 1.48499 * 109.46891 * 60.00122 * 17 15 13 19 19 H 1.48500 * 109.47166 * 180.02562 * 17 15 13 20 20 H 1.48507 * 109.47026 * 300.00209 * 17 15 13 21 21 C 1.39143 * 120.40476 * 359.69376 * 8 7 6 22 22 C 1.39323 * 119.76502 * 359.72385 * 7 6 4 23 23 C 1.38023 * 119.87496 * 0.02562 * 22 7 6 24 24 C 1.50711 * 119.94066 * 180.02562 * 23 22 7 25 25 H 1.09003 * 109.47224 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47178 * 300.00488 * 1 2 3 27 27 H 1.09005 * 109.47162 * 60.00139 * 1 2 3 28 28 H 1.09005 * 109.47162 * 119.99861 * 2 1 3 29 29 H 1.09001 * 109.46979 * 239.99958 * 2 1 3 30 30 H 1.08994 * 109.46827 * 90.00068 * 5 4 3 31 31 H 1.08996 * 109.46938 * 210.00276 * 5 4 3 32 32 H 1.09000 * 109.46994 * 330.00211 * 5 4 3 33 33 H 1.08000 * 120.05895 * 180.27161 * 6 4 3 34 34 H 1.08001 * 119.41808 * 359.97438 * 9 8 7 35 35 H 1.07998 * 119.66557 * 179.97438 * 11 10 9 36 36 H 0.96998 * 120.00262 * 179.97438 * 16 15 13 37 37 H 1.07999 * 120.95586 * 0.02562 * 21 8 7 38 38 H 1.08004 * 120.06708 * 179.97438 * 22 7 6 39 39 H 1.08999 * 109.46875 * 269.98106 * 24 23 22 40 40 H 1.09000 * 109.46926 * 29.97495 * 24 23 22 41 41 H 1.08993 * 109.47295 * 149.97592 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2674 2.0686 -1.1993 5 6 2.0212 1.3520 -2.5020 6 6 2.7222 3.3717 -1.2051 7 6 2.9552 4.0308 0.0000 8 6 3.4494 5.4303 0.0001 9 6 3.6847 6.0972 1.2049 10 7 4.1244 7.3408 1.2220 11 6 4.3623 8.0136 0.1172 12 6 4.1536 7.4218 -1.1429 13 6 4.4103 8.1463 -2.3302 14 1 5.0987 8.9784 -2.3167 15 6 3.7727 7.7850 -3.5222 16 7 2.7079 7.0254 -3.4902 17 14 4.4415 8.3872 -5.1591 18 1 5.8331 7.8996 -5.3346 19 1 3.5921 7.8692 -6.2616 20 1 4.4306 9.8720 -5.1822 21 6 3.6897 6.0923 -1.1999 22 6 2.7221 3.3717 1.2052 23 6 2.2625 2.0703 1.1993 24 6 2.0093 1.3561 2.5021 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3633 0.5139 0.8899 27 1 -0.3634 0.5138 -0.8900 28 1 1.8933 -0.5138 0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 0.9929 1.5215 -2.8212 31 1 2.7047 1.7328 -3.2609 32 1 2.1881 0.2835 -2.3661 33 1 2.9012 3.8780 -2.1422 34 1 3.5034 5.5856 2.1386 35 1 4.7213 9.0304 0.1774 36 1 2.2656 6.7752 -4.3164 37 1 3.5216 5.6028 -2.1478 38 1 2.9015 3.8779 2.1422 39 1 2.9172 0.8415 2.8167 40 1 1.7201 2.0807 3.2634 41 1 1.2076 0.6299 2.3685 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240740943.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:28 Heat of formation + Delta-G solvation = 7.595096 kcal Electronic energy + Delta-G solvation = -21188.630266 eV Core-core repulsion = 18224.027235 eV Total energy + Delta-G solvation = -2964.603031 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.06915 -39.90541 -36.09770 -35.71943 -34.51254 -32.74412 -32.25555 -29.94360 -28.14630 -27.96470 -27.13289 -24.95566 -23.69095 -22.88432 -21.38787 -20.81337 -19.10822 -17.87480 -17.31729 -16.89509 -16.50957 -15.98949 -15.77391 -15.17721 -14.73695 -14.44497 -14.39750 -14.24089 -14.08760 -13.98842 -13.71671 -13.48014 -13.25220 -13.19318 -13.06518 -12.88410 -12.79152 -12.62363 -12.48662 -12.25518 -11.98084 -11.81764 -11.45324 -11.41525 -11.21801 -10.48533 -10.06305 -9.79434 -9.43805 -8.83389 -8.65405 -6.50326 -0.05394 0.50016 0.89648 1.22993 1.36534 1.48181 1.52994 2.15477 2.61400 2.93362 3.70750 3.78618 3.86973 3.90983 4.01845 4.18640 4.20849 4.44131 4.49590 4.55634 4.58584 4.64950 4.71253 4.74517 4.76798 4.84895 4.86841 4.89525 5.00937 5.08288 5.12766 5.14998 5.19425 5.23160 5.29203 5.43340 5.50635 5.57234 5.65089 5.80151 5.86657 5.87717 6.03259 6.19763 6.44558 6.70534 6.72473 7.63199 8.19958 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018445 B = 0.004966 C = 0.004014 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1517.641782 B = 5637.023460 C = 6974.083237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 C -0.093 4.093 4 C -0.087 4.087 5 C -0.111 4.111 6 C -0.134 4.134 7 C -0.044 4.044 8 C -0.088 4.088 9 C -0.037 4.037 10 N -0.478 5.478 11 C -0.043 4.043 12 C 0.038 3.962 13 C -0.481 4.481 14 H 0.088 0.912 15 C 0.037 3.963 16 N -0.817 5.817 17 Si 0.988 3.012 18 H -0.259 1.259 19 H -0.266 1.266 20 H -0.256 1.256 21 C -0.144 4.144 22 C -0.129 4.129 23 C -0.084 4.084 24 C -0.110 4.110 25 H 0.077 0.923 26 H 0.051 0.949 27 H 0.046 0.954 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.058 0.942 32 H 0.092 0.908 33 H 0.103 0.897 34 H 0.148 0.852 35 H 0.137 0.863 36 H 0.293 0.707 37 H 0.124 0.876 38 H 0.127 0.873 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.939 -15.474 1.549 16.042 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.119 4.119 3 C -0.093 4.093 4 C -0.087 4.087 5 C -0.167 4.167 6 C -0.152 4.152 7 C -0.044 4.044 8 C -0.090 4.090 9 C -0.195 4.195 10 N -0.186 5.186 11 C -0.203 4.203 12 C 0.034 3.966 13 C -0.510 4.510 14 H 0.106 0.894 15 C -0.180 4.180 16 N -0.442 5.442 17 Si 0.807 3.193 18 H -0.183 1.183 19 H -0.190 1.190 20 H -0.180 1.180 21 C -0.170 4.170 22 C -0.147 4.147 23 C -0.084 4.084 24 C -0.167 4.167 25 H 0.096 0.904 26 H 0.070 0.930 27 H 0.065 0.935 28 H 0.105 0.895 29 H 0.102 0.898 30 H 0.094 0.906 31 H 0.077 0.923 32 H 0.111 0.889 33 H 0.121 0.879 34 H 0.165 0.835 35 H 0.154 0.846 36 H 0.104 0.896 37 H 0.142 0.858 38 H 0.145 0.855 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -4.001 -15.178 2.214 15.852 hybrid contribution 0.192 0.742 -1.570 1.747 sum -3.810 -14.437 0.645 14.945 Atomic orbital electron populations 1.21719 0.94164 1.02524 1.01723 1.20647 0.96559 0.90702 1.04006 1.19941 1.00348 0.97751 0.91277 1.19930 0.98841 0.93187 0.96748 1.20866 1.02276 1.00881 0.92676 1.21162 1.01699 0.95295 0.97062 1.18906 0.99058 0.92070 0.94397 1.19803 1.00423 0.93999 0.94752 1.22228 1.08651 0.92227 0.96408 1.66944 1.10324 1.08721 1.32564 1.22722 1.10067 0.99602 0.87933 1.18817 0.90833 0.92498 0.94473 1.19848 1.23555 1.14589 0.93049 0.89381 1.26867 0.92863 0.93398 1.04854 1.69841 1.14122 1.28243 1.31962 0.85161 0.79300 0.79812 0.74986 1.18336 1.18973 1.17989 1.21881 1.03830 0.94367 0.96913 1.21201 1.01398 0.95266 0.96849 1.20000 0.98440 0.93379 0.96579 1.20875 1.03063 1.00405 0.92319 0.90395 0.92974 0.93507 0.89482 0.89753 0.90642 0.92284 0.88922 0.87869 0.83502 0.84583 0.89627 0.85834 0.85487 0.90020 0.91239 0.89579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.36 9.75 71.98 0.70 -1.66 16 2 C -0.08 -1.50 4.96 29.85 0.15 -1.35 16 3 C -0.09 -2.52 5.14 -19.83 -0.10 -2.62 16 4 C -0.09 -2.73 5.88 -19.90 -0.12 -2.85 16 5 C -0.11 -2.67 9.60 71.24 0.68 -1.99 16 6 C -0.13 -5.36 9.09 22.48 0.20 -5.15 16 7 C -0.04 -1.85 5.88 -20.04 -0.12 -1.97 16 8 C -0.09 -4.36 5.88 -19.99 -0.12 -4.47 16 9 C -0.04 -1.82 10.60 85.03 0.90 -0.92 16 10 N -0.48 -24.89 10.32 -192.78 -1.99 -26.88 16 11 C -0.04 -2.29 10.96 85.36 0.94 -1.35 16 12 C 0.04 2.11 5.59 -21.21 -0.12 2.00 16 13 C -0.48 -25.64 9.08 23.47 0.21 -25.42 16 14 H 0.09 4.43 7.90 -2.91 -0.02 4.40 16 15 C 0.04 1.80 5.18 85.25 0.44 2.24 16 16 N -0.82 -41.80 10.92 21.82 0.24 -41.56 16 17 Si 0.99 36.90 29.59 68.60 2.03 38.93 16 18 H -0.26 -9.50 7.11 99.48 0.71 -8.80 16 19 H -0.27 -9.34 7.11 99.48 0.71 -8.63 16 20 H -0.26 -9.22 7.11 99.48 0.71 -8.51 16 21 C -0.14 -7.83 8.17 23.14 0.19 -7.64 16 22 C -0.13 -4.56 9.09 22.48 0.20 -4.36 16 23 C -0.08 -2.39 5.88 -19.89 -0.12 -2.50 16 24 C -0.11 -2.16 9.18 71.24 0.65 -1.51 16 25 H 0.08 0.93 8.14 -2.39 -0.02 0.91 16 26 H 0.05 0.90 7.40 -2.39 -0.02 0.88 16 27 H 0.05 0.86 8.14 -2.38 -0.02 0.84 16 28 H 0.09 1.31 6.69 -2.38 -0.02 1.30 16 29 H 0.08 1.35 5.92 -2.39 -0.01 1.33 16 30 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.06 1.47 8.08 -2.39 -0.02 1.46 16 32 H 0.09 1.71 5.93 -2.39 -0.01 1.69 16 33 H 0.10 4.50 6.26 -2.91 -0.02 4.48 16 34 H 0.15 6.19 6.20 -2.91 -0.02 6.17 16 35 H 0.14 6.70 8.06 -2.91 -0.02 6.68 16 36 H 0.29 13.48 8.30 -92.71 -0.77 12.71 16 37 H 0.12 6.79 4.44 -2.91 -0.01 6.78 16 38 H 0.13 4.19 6.22 -2.91 -0.02 4.17 16 39 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 40 H 0.07 1.31 8.08 -2.39 -0.02 1.29 16 41 H 0.09 1.36 5.83 -2.39 -0.01 1.34 16 Total: -1.00 -63.40 329.93 5.91 -57.49 By element: Atomic # 1 Polarization: 32.50 SS G_CDS: 1.05 Total: 33.55 kcal Atomic # 6 Polarization: -66.12 SS G_CDS: 4.59 Total: -61.53 kcal Atomic # 7 Polarization: -66.68 SS G_CDS: -1.75 Total: -68.43 kcal Atomic # 14 Polarization: 36.90 SS G_CDS: 2.03 Total: 38.93 kcal Total: -63.40 5.91 -57.49 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240740943.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.083 kcal (2) G-P(sol) polarization free energy of solvation -63.400 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.912 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.488 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.595 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds