Wall clock time and date at job start Tue Mar 31 2020 05:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46906 * 2 1 4 4 C 1.38402 * 119.84848 * 269.72522 * 3 2 1 5 5 C 1.50702 * 119.92093 * 359.97438 * 4 3 2 6 6 C 1.37923 * 120.15618 * 179.76421 * 4 3 2 7 7 C 1.39673 * 119.83933 * 0.53073 * 6 4 3 8 8 C 1.47856 * 120.14816 * 179.74657 * 7 6 4 9 9 C 1.39295 * 120.78381 * 129.97613 * 8 7 6 10 10 N 1.31673 * 120.66421 * 179.97438 * 9 8 7 11 11 C 1.32206 * 122.50418 * 359.97438 * 10 9 8 12 12 C 1.36500 * 121.50407 * 0.02562 * 11 10 9 13 13 C 1.41118 * 119.10454 * 359.75896 * 12 11 10 14 14 C 1.40930 * 121.10907 * 180.25820 * 13 12 11 15 15 H 1.08003 * 120.00331 * 154.77529 * 14 13 12 16 16 C 1.40186 * 119.99973 * 334.77502 * 14 13 12 17 17 N 1.30688 * 119.99664 * 344.19608 * 16 14 13 18 18 Si 1.86801 * 120.00186 * 164.19293 * 16 14 13 19 19 H 1.48495 * 109.46760 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46764 * 120.00136 * 18 16 14 21 21 H 1.48490 * 109.47240 * 240.00481 * 18 16 14 22 22 C 1.39664 * 119.70064 * 359.72274 * 7 6 4 23 23 C 1.37917 * 119.85260 * 359.97438 * 22 7 6 24 24 C 1.50697 * 119.92586 * 179.97438 * 23 22 7 25 25 H 1.09002 * 109.47055 * 300.00134 * 1 2 3 26 26 H 1.09001 * 109.47075 * 60.00224 * 1 2 3 27 27 H 1.08997 * 109.46662 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47450 * 119.99387 * 2 1 3 29 29 H 1.09000 * 109.47462 * 240.00198 * 2 1 3 30 30 H 1.09005 * 109.47203 * 90.00216 * 5 4 3 31 31 H 1.08998 * 109.47017 * 209.99971 * 5 4 3 32 32 H 1.08995 * 109.47420 * 330.00051 * 5 4 3 33 33 H 1.07998 * 120.07658 * 180.25545 * 6 4 3 34 34 H 1.08000 * 119.66666 * 359.97438 * 9 8 7 35 35 H 1.07997 * 119.24916 * 179.97438 * 11 10 9 36 36 H 1.07996 * 120.44370 * 180.02562 * 12 11 10 37 37 H 0.97000 * 119.99540 * 179.97438 * 17 16 14 38 38 H 1.08003 * 120.07461 * 179.97438 * 22 7 6 39 39 H 1.08996 * 109.47060 * 270.01721 * 24 23 22 40 40 H 1.08993 * 109.47494 * 30.02404 * 24 23 22 41 41 H 1.09002 * 109.46829 * 150.02768 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2673 2.0684 -1.2004 5 6 2.0209 1.3507 -2.5025 6 6 2.7224 3.3703 -1.2078 7 6 2.9567 4.0316 -0.0001 8 6 3.4499 5.4254 -0.0001 9 6 2.8233 6.4034 0.7690 10 7 3.2649 7.6439 0.7676 11 6 4.3081 8.0258 0.0509 12 6 4.9930 7.1462 -0.7367 13 6 4.5787 5.7980 -0.7809 14 6 5.2584 4.8529 -1.5753 15 1 5.2234 3.8049 -1.3166 16 6 5.9800 5.2732 -2.7013 17 7 5.7816 6.4662 -3.1966 18 14 7.2251 4.1281 -3.4936 19 1 7.2612 2.8443 -2.7483 20 1 6.8342 3.8710 -4.9030 21 1 8.5691 4.7586 -3.4598 22 6 2.7224 3.3703 1.2076 23 6 2.2614 2.0705 1.2005 24 6 2.0086 1.3553 2.5026 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 0.9924 1.5199 -2.8216 31 1 2.7041 1.7310 -3.2619 32 1 2.1878 0.2823 -2.3658 33 1 2.9014 3.8758 -2.1453 34 1 1.9668 6.1415 1.3724 35 1 4.6251 9.0575 0.0888 36 1 5.8433 7.4767 -1.3148 37 1 6.2812 6.7572 -3.9755 38 1 2.9019 3.8758 2.1451 39 1 2.9162 0.8396 2.8160 40 1 1.7203 2.0791 3.2647 41 1 1.2063 0.6296 2.3687 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240741085.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:37 Heat of formation + Delta-G solvation = 19.243369 kcal Electronic energy + Delta-G solvation = -21580.310910 eV Core-core repulsion = 18616.212986 eV Total energy + Delta-G solvation = -2964.097924 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.44562 -38.13542 -34.42780 -34.06480 -33.11597 -31.23812 -30.17430 -28.48148 -26.79639 -26.34082 -25.77121 -23.49165 -21.68081 -21.26129 -20.04822 -19.14313 -17.64134 -15.84735 -15.57613 -15.39357 -14.61139 -14.45378 -14.30496 -13.83707 -13.34948 -13.06162 -12.90414 -12.82961 -12.68579 -12.39838 -12.34418 -12.21290 -12.04358 -11.80506 -11.51598 -11.49573 -11.29039 -11.15782 -10.87264 -10.74632 -10.45125 -10.26494 -10.21298 -9.73109 -9.51507 -8.35070 -8.05153 -7.87679 -7.84428 -7.26846 -6.91064 -4.64654 1.85338 2.07418 2.69147 2.84410 2.97245 3.03436 3.18961 3.78425 4.39767 4.56666 5.07080 5.14679 5.35606 5.38550 5.49458 5.53211 5.62059 5.67599 5.78115 5.82546 5.84035 5.93401 5.95447 6.02258 6.03853 6.09197 6.22439 6.25551 6.34539 6.39002 6.40108 6.74731 6.81483 6.84819 6.88052 7.07048 7.12919 7.26436 7.34789 7.38036 7.55324 7.71327 7.85890 8.04366 8.38782 8.63600 8.68131 9.58320 9.94735 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014507 B = 0.006508 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.621161 B = 4301.066965 C = 5669.786834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.082 4.082 3 C -0.109 4.109 4 C -0.088 4.088 5 C -0.112 4.112 6 C -0.099 4.099 7 C 0.026 3.974 8 C -0.233 4.233 9 C 0.128 3.872 10 N -0.579 5.579 11 C 0.081 3.919 12 C -0.209 4.209 13 C 0.145 3.855 14 C -0.439 4.439 15 H 0.087 0.913 16 C 0.078 3.922 17 N -0.779 5.779 18 Si 0.907 3.093 19 H -0.257 1.257 20 H -0.271 1.271 21 H -0.269 1.269 22 C -0.131 4.131 23 C -0.088 4.088 24 C -0.110 4.110 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.068 0.932 30 H 0.062 0.938 31 H 0.063 0.937 32 H 0.062 0.938 33 H 0.126 0.874 34 H 0.121 0.879 35 H 0.118 0.882 36 H 0.125 0.875 37 H 0.284 0.716 38 H 0.113 0.887 39 H 0.062 0.938 40 H 0.060 0.940 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.500 -10.469 2.029 11.575 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.120 4.120 3 C -0.109 4.109 4 C -0.088 4.088 5 C -0.168 4.168 6 C -0.117 4.117 7 C 0.025 3.975 8 C -0.238 4.238 9 C -0.030 4.030 10 N -0.293 5.293 11 C -0.067 4.067 12 C -0.231 4.231 13 C 0.137 3.863 14 C -0.469 4.469 15 H 0.105 0.895 16 C -0.143 4.143 17 N -0.403 5.403 18 Si 0.731 3.269 19 H -0.180 1.180 20 H -0.197 1.197 21 H -0.194 1.194 22 C -0.149 4.149 23 C -0.088 4.088 24 C -0.167 4.167 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.083 0.917 29 H 0.087 0.913 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.143 0.857 34 H 0.138 0.862 35 H 0.135 0.865 36 H 0.143 0.857 37 H 0.096 0.904 38 H 0.131 0.869 39 H 0.081 0.919 40 H 0.079 0.921 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -4.833 -9.630 2.337 11.025 hybrid contribution 1.151 -0.864 -1.051 1.782 sum -3.682 -10.494 1.286 11.195 Atomic orbital electron populations 1.21718 0.95450 1.00798 1.02160 1.20504 0.95643 0.93727 1.02081 1.19349 1.03567 0.95778 0.92221 1.19561 1.00502 0.94612 0.94161 1.20795 1.01503 0.99668 0.94868 1.21242 0.98516 0.93369 0.98606 1.18631 0.94023 0.92896 0.91946 1.19568 1.01283 0.92819 1.10132 1.22076 0.97049 0.88666 0.95241 1.67310 1.17175 1.18652 1.26157 1.21720 0.92632 0.98266 0.94088 1.21906 1.03175 0.94788 1.03209 1.17744 0.88085 0.92341 0.88138 1.19648 1.24692 0.95662 1.06920 0.89471 1.26029 0.95994 0.95537 0.96733 1.69755 1.33530 1.18462 1.18598 0.86254 0.80196 0.81291 0.79201 1.18017 1.19662 1.19444 1.21096 1.02298 0.93998 0.97546 1.19458 1.00753 0.94443 0.94141 1.20762 1.01338 0.99912 0.94663 0.92726 0.92656 0.93133 0.91654 0.91312 0.91930 0.91800 0.91876 0.85651 0.86194 0.86469 0.85695 0.90446 0.86938 0.91927 0.92117 0.91858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.75 37.16 0.36 -1.22 16 2 C -0.08 -1.03 4.96 -27.88 -0.14 -1.16 16 3 C -0.11 -1.74 5.14 -104.50 -0.54 -2.28 16 4 C -0.09 -1.54 5.87 -104.68 -0.61 -2.15 16 5 C -0.11 -1.59 9.59 36.01 0.35 -1.24 16 6 C -0.10 -2.03 7.73 -39.16 -0.30 -2.33 16 7 C 0.03 0.55 4.99 -104.89 -0.52 0.03 16 8 C -0.23 -5.58 5.54 -104.04 -0.58 -6.16 16 9 C 0.13 3.00 10.71 -17.23 -0.18 2.81 16 10 N -0.58 -14.16 10.32 -13.37 -0.14 -14.30 16 11 C 0.08 1.94 11.09 -18.02 -0.20 1.74 16 12 C -0.21 -5.29 8.72 -39.12 -0.34 -5.64 16 13 C 0.14 3.72 5.59 -106.26 -0.59 3.13 16 14 C -0.44 -10.98 7.31 -37.83 -0.28 -11.26 16 15 H 0.09 2.18 6.71 -52.48 -0.35 1.83 16 16 C 0.08 1.84 5.21 -17.31 -0.09 1.75 16 17 N -0.78 -18.95 10.95 55.56 0.61 -18.34 16 18 Si 0.91 17.84 29.59 -169.99 -5.03 12.81 16 19 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 20 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 21 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 22 C -0.13 -2.48 9.20 -39.17 -0.36 -2.84 16 23 C -0.09 -1.45 5.87 -104.68 -0.61 -2.06 16 24 C -0.11 -1.41 9.18 36.00 0.33 -1.08 16 25 H 0.05 0.61 7.39 -51.93 -0.38 0.23 16 26 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 27 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 28 H 0.06 0.75 6.68 -51.93 -0.35 0.40 16 29 H 0.07 0.81 5.92 -51.93 -0.31 0.50 16 30 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.92 8.08 -51.93 -0.42 0.50 16 32 H 0.06 0.78 5.93 -51.93 -0.31 0.47 16 33 H 0.13 2.75 7.39 -52.49 -0.39 2.36 16 34 H 0.12 2.51 8.05 -52.49 -0.42 2.09 16 35 H 0.12 2.49 8.06 -52.49 -0.42 2.07 16 36 H 0.13 3.20 6.26 -52.49 -0.33 2.87 16 37 H 0.28 6.25 8.29 -40.82 -0.34 5.92 16 38 H 0.11 2.04 8.05 -52.48 -0.42 1.61 16 39 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 40 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 41 H 0.06 0.71 5.83 -51.93 -0.30 0.41 16 LS Contribution 331.94 15.07 5.00 5.00 Total: -1.00 -27.08 331.94 -9.52 -36.60 By element: Atomic # 1 Polarization: 13.85 SS G_CDS: -5.65 Total: 8.20 kcal Atomic # 6 Polarization: -25.66 SS G_CDS: -4.32 Total: -29.97 kcal Atomic # 7 Polarization: -33.11 SS G_CDS: 0.47 Total: -32.64 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.03 Total: 12.81 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -27.08 -9.52 -36.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240741085.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.848 kcal (2) G-P(sol) polarization free energy of solvation -27.082 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.605 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds