Wall clock time and date at job start Tue Mar 31 2020 05:09:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50700 * 109.46906 * 2 1 4 4 C 1.38402 * 119.84848 * 269.72522 * 3 2 1 5 5 C 1.50702 * 119.92093 * 359.97438 * 4 3 2 6 6 C 1.37923 * 120.15618 * 179.76421 * 4 3 2 7 7 C 1.39673 * 119.83933 * 0.53073 * 6 4 3 8 8 C 1.47856 * 120.14816 * 179.74657 * 7 6 4 9 9 C 1.39295 * 120.78381 * 129.97613 * 8 7 6 10 10 N 1.31673 * 120.66421 * 179.97438 * 9 8 7 11 11 C 1.32206 * 122.50418 * 359.97438 * 10 9 8 12 12 C 1.36500 * 121.50407 * 0.02562 * 11 10 9 13 13 C 1.41118 * 119.10454 * 359.75896 * 12 11 10 14 14 C 1.40930 * 121.10907 * 180.25820 * 13 12 11 15 15 H 1.08003 * 120.00331 * 154.77529 * 14 13 12 16 16 C 1.40186 * 119.99973 * 334.77502 * 14 13 12 17 17 N 1.30688 * 119.99664 * 344.19608 * 16 14 13 18 18 Si 1.86801 * 120.00186 * 164.19293 * 16 14 13 19 19 H 1.48495 * 109.46760 * 0.02562 * 18 16 14 20 20 H 1.48502 * 109.46764 * 120.00136 * 18 16 14 21 21 H 1.48490 * 109.47240 * 240.00481 * 18 16 14 22 22 C 1.39664 * 119.70064 * 359.72274 * 7 6 4 23 23 C 1.37917 * 119.85260 * 359.97438 * 22 7 6 24 24 C 1.50697 * 119.92586 * 179.97438 * 23 22 7 25 25 H 1.09002 * 109.47055 * 300.00134 * 1 2 3 26 26 H 1.09001 * 109.47075 * 60.00224 * 1 2 3 27 27 H 1.08997 * 109.46662 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47450 * 119.99387 * 2 1 3 29 29 H 1.09000 * 109.47462 * 240.00198 * 2 1 3 30 30 H 1.09005 * 109.47203 * 90.00216 * 5 4 3 31 31 H 1.08998 * 109.47017 * 209.99971 * 5 4 3 32 32 H 1.08995 * 109.47420 * 330.00051 * 5 4 3 33 33 H 1.07998 * 120.07658 * 180.25545 * 6 4 3 34 34 H 1.08000 * 119.66666 * 359.97438 * 9 8 7 35 35 H 1.07997 * 119.24916 * 179.97438 * 11 10 9 36 36 H 1.07996 * 120.44370 * 180.02562 * 12 11 10 37 37 H 0.97000 * 119.99540 * 179.97438 * 17 16 14 38 38 H 1.08003 * 120.07461 * 179.97438 * 22 7 6 39 39 H 1.08996 * 109.47060 * 270.01721 * 24 23 22 40 40 H 1.08993 * 109.47494 * 30.02404 * 24 23 22 41 41 H 1.09002 * 109.46829 * 150.02768 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2673 2.0684 -1.2004 5 6 2.0209 1.3507 -2.5025 6 6 2.7224 3.3703 -1.2078 7 6 2.9567 4.0316 -0.0001 8 6 3.4499 5.4254 -0.0001 9 6 2.8233 6.4034 0.7690 10 7 3.2649 7.6439 0.7676 11 6 4.3081 8.0258 0.0509 12 6 4.9930 7.1462 -0.7367 13 6 4.5787 5.7980 -0.7809 14 6 5.2584 4.8529 -1.5753 15 1 5.2234 3.8049 -1.3166 16 6 5.9800 5.2732 -2.7013 17 7 5.7816 6.4662 -3.1966 18 14 7.2251 4.1281 -3.4936 19 1 7.2612 2.8443 -2.7483 20 1 6.8342 3.8710 -4.9030 21 1 8.5691 4.7586 -3.4598 22 6 2.7224 3.3703 1.2076 23 6 2.2614 2.0705 1.2005 24 6 2.0086 1.3553 2.5026 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3632 -1.0277 0.0005 28 1 1.8934 -0.5137 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 0.9924 1.5199 -2.8216 31 1 2.7041 1.7310 -3.2619 32 1 2.1878 0.2823 -2.3658 33 1 2.9014 3.8758 -2.1453 34 1 1.9668 6.1415 1.3724 35 1 4.6251 9.0575 0.0888 36 1 5.8433 7.4767 -1.3148 37 1 6.2812 6.7572 -3.9755 38 1 2.9019 3.8758 2.1451 39 1 2.9162 0.8396 2.8160 40 1 1.7203 2.0791 3.2647 41 1 1.2063 0.6296 2.3687 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240741085.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:37 Heat of formation + Delta-G solvation = 7.867305 kcal Electronic energy + Delta-G solvation = -21580.804213 eV Core-core repulsion = 18616.212986 eV Total energy + Delta-G solvation = -2964.591227 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.92652 -39.85029 -36.15390 -35.51740 -34.38810 -32.76246 -31.92320 -29.94838 -28.18616 -27.81336 -27.27420 -24.84080 -23.47732 -22.77294 -21.39172 -20.64439 -19.50953 -17.51418 -17.01863 -16.81976 -16.30190 -16.07722 -15.95527 -15.04430 -14.60425 -14.49407 -14.40810 -14.11531 -14.09440 -13.92929 -13.70655 -13.62363 -13.26417 -13.16965 -12.99334 -12.87944 -12.74312 -12.61414 -12.16935 -12.00038 -11.95156 -11.84132 -11.40529 -11.33691 -11.25872 -10.06704 -9.94182 -9.69071 -9.28965 -8.93772 -8.67215 -6.54877 0.30056 0.64744 0.93452 1.08515 1.33673 1.47949 1.50006 2.12970 2.70897 2.95158 3.67852 3.92906 3.97354 4.05062 4.13247 4.22283 4.31140 4.44926 4.57739 4.60908 4.63910 4.76572 4.79732 4.82803 4.90037 4.91943 4.95282 5.00952 5.03607 5.07875 5.18793 5.20566 5.25204 5.36924 5.40725 5.46917 5.53914 5.58731 5.73744 5.88719 5.91721 6.04303 6.18081 6.33686 6.50176 6.74635 6.79254 7.67555 8.17276 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014507 B = 0.006508 C = 0.004937 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.621161 B = 4301.066965 C = 5669.786834 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.081 4.081 3 C -0.103 4.103 4 C -0.092 4.092 5 C -0.110 4.110 6 C -0.120 4.120 7 C -0.006 4.006 8 C -0.236 4.236 9 C 0.116 3.884 10 N -0.590 5.590 11 C 0.076 3.924 12 C -0.230 4.230 13 C 0.115 3.885 14 C -0.456 4.456 15 H 0.079 0.921 16 C 0.041 3.959 17 N -0.807 5.807 18 Si 0.976 3.024 19 H -0.259 1.259 20 H -0.261 1.261 21 H -0.260 1.260 22 C -0.141 4.141 23 C -0.087 4.087 24 C -0.108 4.108 25 H 0.052 0.948 26 H 0.047 0.953 27 H 0.075 0.925 28 H 0.082 0.918 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.054 0.946 32 H 0.088 0.912 33 H 0.096 0.904 34 H 0.142 0.858 35 H 0.142 0.858 36 H 0.116 0.884 37 H 0.294 0.706 38 H 0.114 0.886 39 H 0.075 0.925 40 H 0.067 0.933 41 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.134 -13.541 2.356 14.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.118 4.118 3 C -0.103 4.103 4 C -0.092 4.092 5 C -0.166 4.166 6 C -0.138 4.138 7 C -0.007 4.007 8 C -0.241 4.241 9 C -0.041 4.041 10 N -0.304 5.304 11 C -0.072 4.072 12 C -0.253 4.253 13 C 0.107 3.893 14 C -0.486 4.486 15 H 0.097 0.903 16 C -0.177 4.177 17 N -0.432 5.432 18 Si 0.796 3.204 19 H -0.183 1.183 20 H -0.185 1.185 21 H -0.185 1.185 22 C -0.159 4.159 23 C -0.087 4.087 24 C -0.164 4.164 25 H 0.071 0.929 26 H 0.066 0.934 27 H 0.094 0.906 28 H 0.100 0.900 29 H 0.098 0.902 30 H 0.095 0.905 31 H 0.073 0.927 32 H 0.107 0.893 33 H 0.114 0.886 34 H 0.159 0.841 35 H 0.159 0.841 36 H 0.134 0.866 37 H 0.105 0.895 38 H 0.132 0.868 39 H 0.093 0.907 40 H 0.086 0.914 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -5.489 -12.699 2.675 14.090 hybrid contribution 1.257 0.031 -1.123 1.686 sum -4.232 -12.667 1.551 13.445 Atomic orbital electron populations 1.21700 0.94068 1.02354 1.01745 1.20605 0.96664 0.90976 1.03548 1.19847 1.01615 0.97581 0.91287 1.19909 0.99379 0.93497 0.96450 1.20845 1.02137 1.00671 0.92943 1.21086 1.00714 0.94955 0.97086 1.18642 0.96366 0.92214 0.93443 1.19916 1.00529 0.94582 1.09105 1.22439 0.97631 0.88435 0.95565 1.67366 1.17396 1.19156 1.26531 1.22060 0.92384 0.99254 0.93538 1.21905 1.03696 0.95318 1.04339 1.18146 0.89050 0.92895 0.89203 1.19700 1.25900 0.95129 1.07824 0.90341 1.26815 0.97167 0.97032 0.96683 1.69786 1.34255 1.19900 1.19215 0.85231 0.77797 0.78920 0.78424 1.18301 1.18520 1.18459 1.21187 1.02886 0.95319 0.96555 1.19909 0.98943 0.93509 0.96316 1.20830 1.02712 1.00280 0.92584 0.92933 0.93391 0.90604 0.89953 0.90157 0.90487 0.92683 0.89338 0.88591 0.84054 0.84054 0.86604 0.89484 0.86764 0.90662 0.91405 0.89643 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.52 9.75 71.98 0.70 -1.82 16 2 C -0.08 -1.68 4.96 29.85 0.15 -1.53 16 3 C -0.10 -3.06 5.14 -19.78 -0.10 -3.17 16 4 C -0.09 -3.15 5.87 -19.90 -0.12 -3.26 16 5 C -0.11 -2.93 9.59 71.24 0.68 -2.25 16 6 C -0.12 -5.10 7.73 22.54 0.17 -4.93 16 7 C -0.01 -0.26 4.99 -20.04 -0.10 -0.36 16 8 C -0.24 -11.86 5.54 -19.49 -0.11 -11.97 16 9 C 0.12 5.60 10.71 84.97 0.91 6.51 16 10 N -0.59 -29.54 10.32 -196.20 -2.02 -31.56 16 11 C 0.08 3.78 11.09 84.23 0.93 4.71 16 12 C -0.23 -12.24 8.72 22.57 0.20 -12.04 16 13 C 0.11 6.21 5.59 -20.92 -0.12 6.09 16 14 C -0.46 -23.84 7.31 23.40 0.17 -23.67 16 15 H 0.08 4.12 6.71 -2.91 -0.02 4.10 16 16 C 0.04 2.00 5.21 85.34 0.44 2.45 16 17 N -0.81 -40.44 10.95 21.87 0.24 -40.20 16 18 Si 0.98 36.92 29.59 68.60 2.03 38.95 16 19 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 20 H -0.26 -9.35 7.11 99.48 0.71 -8.65 16 21 H -0.26 -9.40 7.11 99.48 0.71 -8.70 16 22 C -0.14 -5.36 9.20 22.54 0.21 -5.15 16 23 C -0.09 -2.70 5.87 -19.90 -0.12 -2.81 16 24 C -0.11 -2.39 9.18 71.23 0.65 -1.74 16 25 H 0.05 0.96 7.39 -2.39 -0.02 0.95 16 26 H 0.05 0.93 8.14 -2.39 -0.02 0.91 16 27 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 28 H 0.08 1.48 6.68 -2.39 -0.02 1.46 16 29 H 0.08 1.52 5.92 -2.39 -0.01 1.50 16 30 H 0.08 1.84 8.14 -2.38 -0.02 1.82 16 31 H 0.05 1.56 8.08 -2.39 -0.02 1.54 16 32 H 0.09 1.90 5.93 -2.39 -0.01 1.88 16 33 H 0.10 4.53 7.39 -2.91 -0.02 4.51 16 34 H 0.14 6.03 8.05 -2.91 -0.02 6.00 16 35 H 0.14 6.12 8.06 -2.91 -0.02 6.09 16 36 H 0.12 6.24 6.26 -2.91 -0.02 6.22 16 37 H 0.29 13.17 8.29 -92.71 -0.77 12.40 16 38 H 0.11 4.16 8.05 -2.91 -0.02 4.14 16 39 H 0.07 1.53 8.14 -2.39 -0.02 1.51 16 40 H 0.07 1.43 8.08 -2.39 -0.02 1.41 16 41 H 0.08 1.54 5.83 -2.39 -0.01 1.52 16 Total: -1.00 -61.09 331.94 5.84 -55.25 By element: Atomic # 1 Polarization: 31.48 SS G_CDS: 1.03 Total: 32.51 kcal Atomic # 6 Polarization: -59.51 SS G_CDS: 4.57 Total: -54.94 kcal Atomic # 7 Polarization: -69.98 SS G_CDS: -1.78 Total: -71.76 kcal Atomic # 14 Polarization: 36.92 SS G_CDS: 2.03 Total: 38.95 kcal Total: -61.09 5.84 -55.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240741085.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.115 kcal (2) G-P(sol) polarization free energy of solvation -61.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.841 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.248 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.867 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds