Wall clock time and date at job start Tue Mar 31 2020 05:09:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50703 * 109.46912 * 2 1 4 4 C 1.38401 * 119.85147 * 269.72623 * 3 2 1 5 5 C 1.50702 * 119.92659 * 359.97438 * 4 3 2 6 6 C 1.37929 * 120.14422 * 179.76397 * 4 3 2 7 7 C 1.39620 * 119.85072 * 0.53147 * 6 4 3 8 8 C 1.47965 * 120.14516 * 179.74080 * 7 6 4 9 9 C 1.40263 * 120.34861 * 359.70479 * 8 7 6 10 10 C 1.36686 * 118.60982 * 179.79208 * 9 8 7 11 11 C 1.40867 * 119.25233 * 0.43858 * 10 9 8 12 12 C 1.40996 * 119.68260 * 179.78566 * 11 10 9 13 13 H 1.07996 * 119.99922 * 0.02562 * 12 11 10 14 14 C 1.40105 * 119.99952 * 180.02562 * 12 11 10 15 15 N 1.30708 * 119.99900 * 359.97438 * 14 12 11 16 16 Si 1.86797 * 119.99998 * 179.97438 * 14 12 11 17 17 H 1.48501 * 109.46753 * 89.99943 * 16 14 12 18 18 H 1.48494 * 109.47313 * 209.99989 * 16 14 12 19 19 H 1.48495 * 109.47150 * 330.00278 * 16 14 12 20 20 N 1.33786 * 120.63760 * 359.80661 * 11 10 9 21 21 C 1.31183 * 121.50436 * 359.97253 * 20 11 10 22 22 C 1.39616 * 119.71113 * 359.72599 * 7 6 4 23 23 C 1.37930 * 119.85166 * 359.97438 * 22 7 6 24 24 C 1.50697 * 119.92855 * 180.02562 * 23 22 7 25 25 H 1.09001 * 109.47194 * 299.99742 * 1 2 3 26 26 H 1.08992 * 109.47399 * 59.99914 * 1 2 3 27 27 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47398 * 120.00078 * 2 1 3 29 29 H 1.09001 * 109.47194 * 240.00258 * 2 1 3 30 30 H 1.08998 * 109.46806 * 90.00173 * 5 4 3 31 31 H 1.08996 * 109.47212 * 209.99742 * 5 4 3 32 32 H 1.08998 * 109.47087 * 330.00492 * 5 4 3 33 33 H 1.08002 * 120.07281 * 180.25625 * 6 4 3 34 34 H 1.08007 * 120.69733 * 0.02562 * 9 8 7 35 35 H 1.07999 * 120.37564 * 180.24164 * 10 9 8 36 36 H 0.97003 * 120.00195 * 180.02562 * 15 14 12 37 37 H 1.08005 * 119.65647 * 180.02562 * 21 20 11 38 38 H 1.07997 * 120.07778 * 179.97438 * 22 7 6 39 39 H 1.09001 * 109.47474 * 270.02063 * 24 23 22 40 40 H 1.09004 * 109.47340 * 30.01760 * 24 23 22 41 41 H 1.08999 * 109.47707 * 150.01620 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2673 2.0685 -1.2004 5 6 2.0209 1.3510 -2.5025 6 6 2.7224 3.3705 -1.2074 7 6 2.9566 4.0314 -0.0001 8 6 3.4503 5.4262 -0.0001 9 6 3.6924 6.0923 -1.2105 10 6 4.1440 7.3818 -1.1690 11 6 4.3600 7.9956 0.0803 12 6 4.8300 9.3239 0.1337 13 1 5.0222 9.8657 -0.7805 14 6 5.0477 9.9407 1.3727 15 7 4.8146 9.2849 2.4791 16 14 5.6711 11.7001 1.4434 17 1 4.5166 12.6339 1.4612 18 1 6.4801 11.8896 2.6741 19 1 6.5121 11.9756 0.2509 20 7 4.1240 7.3303 1.2168 21 6 3.6862 6.0937 1.2089 22 6 2.7225 3.3705 1.2073 23 6 2.2615 2.0705 1.2003 24 6 2.0078 1.3557 2.5024 25 1 -0.3634 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 1.8934 -0.5138 0.8900 29 1 1.8934 -0.5138 -0.8900 30 1 0.9925 1.5202 -2.8216 31 1 2.7041 1.7314 -3.2619 32 1 2.1878 0.2826 -2.3659 33 1 2.9015 3.8761 -2.1448 34 1 3.5220 5.5980 -2.1555 35 1 4.3360 7.9228 -2.0838 36 1 4.9650 9.7121 3.3369 37 1 3.5052 5.5849 2.1443 38 1 2.9020 3.8759 2.1447 39 1 2.9152 0.8402 2.8168 40 1 1.7190 2.0799 3.2642 41 1 1.2056 0.6301 2.3684 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240741433.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:09:31 Heat of formation + Delta-G solvation = 29.103520 kcal Electronic energy + Delta-G solvation = -20816.576973 eV Core-core repulsion = 17852.906618 eV Total energy + Delta-G solvation = -2963.670356 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.53665 -38.08711 -34.64422 -33.48572 -33.28959 -31.12970 -30.59896 -28.88966 -27.05319 -26.38507 -25.61132 -23.18347 -22.00553 -21.39500 -19.96258 -19.29928 -17.63559 -16.13267 -15.77428 -15.36577 -14.70426 -14.34649 -14.07683 -13.92295 -13.31640 -13.15403 -13.00746 -12.94982 -12.64191 -12.54893 -12.39831 -12.24928 -12.05459 -11.82978 -11.58386 -11.42188 -11.18190 -11.02831 -10.98208 -10.90632 -10.69409 -10.27049 -10.18544 -9.96049 -9.56420 -8.64679 -8.22219 -8.07405 -7.67366 -7.11608 -6.57472 -4.62189 1.62480 1.91511 2.75427 2.99583 3.01909 3.03293 3.15566 3.80932 4.27468 4.72308 4.97778 5.05507 5.24828 5.26147 5.37346 5.45125 5.57732 5.67627 5.71475 5.81085 5.81555 5.83755 5.86085 5.91472 5.96169 6.01587 6.04694 6.08702 6.20047 6.26842 6.30741 6.51457 6.66820 6.73463 6.77131 6.93845 7.03395 7.09257 7.15883 7.29274 7.48668 7.65379 7.77963 7.91049 8.07031 8.46893 8.76444 9.96573 10.12567 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.034941 B = 0.003522 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 801.154924 B = 7947.194356 C = 8629.375400 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.080 4.080 3 C -0.127 4.127 4 C -0.073 4.073 5 C -0.112 4.112 6 C -0.151 4.151 7 C 0.036 3.964 8 C -0.276 4.276 9 C -0.036 4.036 10 C -0.273 4.273 11 C 0.252 3.748 12 C -0.409 4.409 13 H 0.088 0.912 14 C 0.063 3.937 15 N -0.700 5.700 16 Si 0.912 3.088 17 H -0.267 1.267 18 H -0.274 1.274 19 H -0.260 1.260 20 N -0.489 5.489 21 C 0.156 3.844 22 C -0.148 4.148 23 C -0.071 4.071 24 C -0.113 4.113 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.050 0.950 28 H 0.065 0.935 29 H 0.067 0.933 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.064 0.936 33 H 0.114 0.886 34 H 0.098 0.902 35 H 0.100 0.900 36 H 0.277 0.723 37 H 0.122 0.878 38 H 0.118 0.882 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.716 -12.170 -2.506 13.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.117 4.117 3 C -0.127 4.127 4 C -0.073 4.073 5 C -0.169 4.169 6 C -0.169 4.169 7 C 0.035 3.965 8 C -0.281 4.281 9 C -0.059 4.059 10 C -0.295 4.295 11 C 0.129 3.871 12 C -0.439 4.439 13 H 0.106 0.894 14 C -0.164 4.164 15 N -0.320 5.320 16 Si 0.735 3.265 17 H -0.192 1.192 18 H -0.199 1.199 19 H -0.183 1.183 20 N -0.200 5.200 21 C -0.013 4.013 22 C -0.167 4.167 23 C -0.071 4.071 24 C -0.170 4.170 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.083 0.917 33 H 0.132 0.868 34 H 0.116 0.884 35 H 0.118 0.882 36 H 0.088 0.912 37 H 0.140 0.860 38 H 0.136 0.864 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -4.523 -11.630 -1.499 12.568 hybrid contribution 0.143 0.430 -0.793 0.913 sum -4.380 -11.200 -2.292 12.242 Atomic orbital electron populations 1.21729 0.95503 1.00817 1.02163 1.20473 0.95616 0.93637 1.01999 1.19283 1.05262 0.96052 0.92151 1.19489 0.99350 0.94249 0.94201 1.20802 1.01514 0.99893 0.94662 1.20963 1.04098 0.94161 0.97675 1.18805 0.92856 0.92671 0.92161 1.19061 1.19759 0.94383 0.94933 1.20658 0.95232 0.94107 0.95876 1.21428 1.13302 0.96488 0.98280 1.18672 0.88569 0.93152 0.86735 1.19787 1.34359 0.96075 0.93633 0.89434 1.26198 0.94549 1.00255 0.95427 1.70120 1.27430 1.35968 0.98449 0.86247 0.79618 0.81480 0.79124 1.19170 1.19877 1.18340 1.68802 1.16357 1.06200 1.28660 1.22773 0.91872 0.91608 0.95015 1.21004 1.03621 0.94264 0.97769 1.19506 0.99140 0.94241 0.94205 1.20803 1.01459 1.00049 0.94678 0.92683 0.92736 0.93109 0.91644 0.91453 0.91783 0.92103 0.91697 0.86791 0.88381 0.88171 0.91174 0.86045 0.86420 0.91728 0.91877 0.91766 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.75 37.16 0.36 -1.13 16 2 C -0.08 -0.92 4.96 -27.88 -0.14 -1.06 16 3 C -0.13 -1.89 5.14 -104.50 -0.54 -2.43 16 4 C -0.07 -1.13 5.87 -104.67 -0.61 -1.75 16 5 C -0.11 -1.35 9.60 36.01 0.35 -1.00 16 6 C -0.15 -2.70 9.09 -39.18 -0.36 -3.06 16 7 C 0.04 0.72 5.88 -104.88 -0.62 0.10 16 8 C -0.28 -6.29 5.92 -104.45 -0.62 -6.91 16 9 C -0.04 -0.80 9.46 -39.38 -0.37 -1.18 16 10 C -0.27 -6.62 9.76 -39.15 -0.38 -7.00 16 11 C 0.25 6.77 6.55 -84.98 -0.56 6.22 16 12 C -0.41 -10.61 9.12 -37.84 -0.35 -10.96 16 13 H 0.09 2.10 7.85 -52.49 -0.41 1.69 16 14 C 0.06 1.55 5.50 -17.33 -0.10 1.45 16 15 N -0.70 -18.08 11.44 55.55 0.64 -17.44 16 16 Si 0.91 17.84 29.56 -169.99 -5.02 12.81 16 17 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 18 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 19 H -0.26 -4.98 7.11 56.52 0.40 -4.58 16 20 N -0.49 -13.35 7.83 -10.84 -0.08 -13.43 16 21 C 0.16 3.82 10.60 -17.13 -0.18 3.64 16 22 C -0.15 -2.70 9.09 -39.18 -0.36 -3.06 16 23 C -0.07 -1.12 5.87 -104.68 -0.61 -1.73 16 24 C -0.11 -1.40 9.18 36.00 0.33 -1.07 16 25 H 0.05 0.59 7.39 -51.93 -0.38 0.21 16 26 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.70 6.69 -51.93 -0.35 0.35 16 29 H 0.07 0.71 5.92 -51.93 -0.31 0.40 16 30 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.06 0.69 8.08 -51.93 -0.42 0.27 16 32 H 0.06 0.68 5.93 -51.93 -0.31 0.37 16 33 H 0.11 1.95 6.25 -52.49 -0.33 1.62 16 34 H 0.10 1.93 6.30 -52.48 -0.33 1.60 16 35 H 0.10 2.22 8.06 -52.49 -0.42 1.80 16 36 H 0.28 6.42 8.29 -40.82 -0.34 6.08 16 37 H 0.12 2.68 6.21 -52.48 -0.33 2.36 16 38 H 0.12 2.08 6.22 -52.49 -0.33 1.75 16 39 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 40 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 41 H 0.06 0.69 5.83 -51.93 -0.30 0.39 16 LS Contribution 331.17 15.07 4.99 4.99 Total: -1.00 -28.48 331.17 -9.69 -38.17 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: -5.46 Total: 5.83 kcal Atomic # 6 Polarization: -26.17 SS G_CDS: -4.75 Total: -30.92 kcal Atomic # 7 Polarization: -31.43 SS G_CDS: 0.55 Total: -30.88 kcal Atomic # 14 Polarization: 17.84 SS G_CDS: -5.02 Total: 12.81 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -28.48 -9.69 -38.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240741433.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.269 kcal (2) G-P(sol) polarization free energy of solvation -28.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.794 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.166 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.104 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds