Wall clock time and date at job start Tue Mar 31 2020 05:55:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46503 * 119.99927 * 2 1 4 4 C 1.39559 * 120.00277 * 179.97438 * 2 1 3 5 5 C 1.39024 * 119.95032 * 0.02562 * 4 2 1 6 6 C 1.37854 * 120.04602 * 180.02562 * 5 4 2 7 7 C 1.39404 * 119.95235 * 359.97438 * 6 5 4 8 8 C 1.48347 * 120.04390 * 180.02562 * 7 6 5 9 9 C 1.39377 * 120.12559 * 359.97438 * 8 7 6 10 10 C 1.37994 * 119.87713 * 179.97438 * 9 8 7 11 11 C 1.38348 * 120.12160 * 0.27936 * 10 9 8 12 12 C 1.38301 * 120.24836 * 359.44541 * 11 10 9 13 13 C 1.50702 * 119.93839 * 180.29923 * 12 11 10 14 14 C 1.50705 * 109.47132 * 270.25029 * 13 12 11 15 15 H 1.07999 * 119.99616 * 0.02562 * 14 13 12 16 16 C 1.37874 * 119.99889 * 179.97438 * 14 13 12 17 17 N 1.31519 * 120.00281 * 0.02562 * 16 14 13 18 18 Si 1.86798 * 119.99952 * 180.02562 * 16 14 13 19 19 H 1.48504 * 109.46866 * 90.00177 * 18 16 14 20 20 H 1.48497 * 109.47447 * 210.00062 * 18 16 14 21 21 H 1.48497 * 109.47561 * 330.00350 * 18 16 14 22 22 C 1.38037 * 120.12545 * 0.55037 * 12 11 10 23 23 C 1.39408 * 119.91011 * 0.27464 * 7 6 5 24 24 C 1.37849 * 119.94958 * 359.45044 * 23 7 6 25 25 H 1.08999 * 109.46873 * 240.00639 * 1 2 3 26 26 H 1.09000 * 109.46896 * 359.97438 * 1 2 3 27 27 H 1.08986 * 109.47088 * 120.00118 * 1 2 3 28 28 H 1.09007 * 109.46684 * 269.99584 * 3 2 1 29 29 H 1.08997 * 109.47600 * 29.99721 * 3 2 1 30 30 H 1.09005 * 109.47350 * 150.00789 * 3 2 1 31 31 H 1.07995 * 119.97829 * 0.04142 * 5 4 2 32 32 H 1.07999 * 120.02670 * 180.02562 * 6 5 4 33 33 H 1.08000 * 120.06122 * 359.95843 * 9 8 7 34 34 H 1.08002 * 119.93588 * 179.97438 * 10 9 8 35 35 H 1.08003 * 119.87326 * 179.69860 * 11 10 9 36 36 H 1.08992 * 109.47208 * 30.25178 * 13 12 11 37 37 H 1.09002 * 109.47134 * 150.24953 * 13 12 11 38 38 H 0.97000 * 120.00033 * 179.97438 * 17 16 14 39 39 H 1.07994 * 120.06197 * 179.74389 * 22 12 11 40 40 H 1.07998 * 120.02518 * 179.70243 * 23 7 6 41 41 H 1.08004 * 119.97834 * 180.24813 * 24 23 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1629 -1.2086 0.0005 5 6 1.4667 -2.4120 0.0005 6 6 2.1541 -3.6070 0.0016 7 6 3.5481 -3.6081 0.0021 8 6 4.2898 -4.8928 0.0027 9 6 3.5956 -6.1013 0.0033 10 6 4.2907 -7.2934 0.0033 11 6 5.6741 -7.2904 0.0086 12 6 6.3682 -6.0942 0.0023 13 6 7.8753 -6.0991 0.0013 14 6 8.3785 -6.1001 1.4219 15 1 7.6772 -6.0978 2.2431 16 6 9.7342 -6.1049 1.6729 17 7 10.5882 -6.1082 0.6727 18 14 10.3581 -6.1069 3.4336 19 1 10.5184 -7.5075 3.9004 20 1 11.6687 -5.4115 3.4952 21 1 9.3831 -5.4033 4.3051 22 6 5.6833 -4.8958 0.0022 23 6 4.2442 -2.4002 0.0074 24 6 3.5530 -1.2075 0.0006 25 1 -0.3633 -0.5137 0.8900 26 1 -0.3633 1.0277 0.0005 27 1 -0.3633 -0.5138 -0.8899 28 1 2.3792 1.5833 -1.0278 29 1 1.6085 2.0285 0.5138 30 1 3.1500 1.1384 0.5137 31 1 0.3868 -2.4107 -0.0006 32 1 1.6130 -4.5416 0.0012 33 1 2.5156 -6.1048 0.0039 34 1 3.7537 -8.2305 0.0041 35 1 6.2141 -8.2257 0.0135 36 1 8.2353 -6.9904 -0.5123 37 1 8.2412 -5.2105 -0.5132 38 1 11.5420 -6.1112 0.8493 39 1 6.2263 -3.9623 0.0015 40 1 5.3242 -2.3989 0.0127 41 1 4.0919 -0.2715 0.0006 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240914367.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:47 Heat of formation + Delta-G solvation = 48.611968 kcal Electronic energy + Delta-G solvation = -20382.556420 eV Core-core repulsion = 17419.732015 eV Total energy + Delta-G solvation = -2962.824406 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -39.76239 -38.41456 -36.19505 -33.45057 -31.74380 -31.39500 -30.74942 -28.44792 -28.28908 -26.92292 -24.79767 -23.46066 -22.37488 -21.71418 -20.47746 -19.50083 -17.56593 -16.30723 -15.92406 -15.77114 -15.44557 -15.23649 -14.47670 -14.37254 -14.03497 -13.62053 -13.46658 -13.16947 -12.92165 -12.89184 -12.48960 -12.39463 -12.36373 -12.03815 -11.67419 -11.53773 -11.28241 -11.09336 -10.81663 -10.60658 -10.38135 -10.16330 -9.98807 -9.47150 -9.38524 -8.81737 -8.40278 -8.29509 -7.81411 -6.91521 -6.02040 -4.05577 1.24170 1.58849 2.18570 2.48567 2.99672 3.32158 3.38252 3.43086 4.01494 4.44322 4.72614 4.74552 4.79612 5.02060 5.03480 5.10531 5.13359 5.32542 5.34262 5.41418 5.43031 5.50135 5.52935 5.66184 5.67294 5.82216 5.99475 6.11508 6.20434 6.22539 6.39641 6.42223 6.71966 6.79226 6.84069 6.91541 7.14817 7.17860 7.24099 7.33303 7.45985 7.53978 7.78788 7.89601 7.94279 8.34976 8.99888 9.58145 11.07871 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019547 B = 0.003586 C = 0.003190 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.102907 B = 7806.452876 C = 8775.718047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.099 3.901 2 N -0.642 5.642 3 C 0.094 3.906 4 C 0.204 3.796 5 C -0.194 4.194 6 C -0.068 4.068 7 C -0.085 4.085 8 C -0.045 4.045 9 C -0.144 4.144 10 C -0.121 4.121 11 C -0.126 4.126 12 C -0.032 4.032 13 C 0.047 3.953 14 C -0.510 4.510 15 H 0.057 0.943 16 C 0.058 3.942 17 N -0.895 5.895 18 Si 0.895 3.105 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.116 4.116 23 C -0.063 4.063 24 C -0.193 4.193 25 H 0.052 0.948 26 H 0.069 0.931 27 H 0.052 0.948 28 H 0.046 0.954 29 H 0.063 0.937 30 H 0.069 0.931 31 H 0.118 0.882 32 H 0.123 0.877 33 H 0.111 0.889 34 H 0.111 0.889 35 H 0.117 0.883 36 H 0.029 0.971 37 H 0.028 0.972 38 H 0.262 0.738 39 H 0.119 0.881 40 H 0.129 0.871 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.586 10.777 -2.516 22.497 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.045 4.045 2 N -0.355 5.355 3 C -0.049 4.049 4 C 0.103 3.897 5 C -0.216 4.216 6 C -0.086 4.086 7 C -0.087 4.087 8 C -0.045 4.045 9 C -0.162 4.162 10 C -0.139 4.139 11 C -0.144 4.144 12 C -0.032 4.032 13 C 0.011 3.989 14 C -0.548 4.548 15 H 0.075 0.925 16 C -0.143 4.143 17 N -0.534 5.534 18 Si 0.722 3.278 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.134 4.134 23 C -0.081 4.081 24 C -0.215 4.215 25 H 0.070 0.930 26 H 0.088 0.912 27 H 0.071 0.929 28 H 0.064 0.936 29 H 0.082 0.918 30 H 0.088 0.912 31 H 0.136 0.864 32 H 0.141 0.859 33 H 0.129 0.871 34 H 0.129 0.871 35 H 0.135 0.865 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.137 0.863 40 H 0.147 0.853 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -19.500 10.966 -2.554 22.518 hybrid contribution 0.408 0.015 1.002 1.082 sum -19.093 10.981 -1.552 22.080 Atomic orbital electron populations 1.21547 0.79793 1.02053 1.01095 1.46244 1.04788 1.03238 1.81204 1.21642 0.97431 0.84846 1.01022 1.17840 0.91205 0.85468 0.95161 1.20493 0.99177 0.90981 1.10991 1.20966 0.93345 0.97231 0.97091 1.18679 0.92678 0.92419 1.04913 1.18669 0.93072 0.91522 1.01205 1.20884 0.98660 0.91970 1.04703 1.20940 0.94482 0.97142 1.01361 1.21132 0.93491 0.98338 1.01415 1.20608 0.98855 0.91784 0.91910 1.18361 0.84522 0.98351 0.97714 1.21071 0.91426 1.50821 0.91521 0.92455 1.25009 0.96902 0.95232 0.97201 1.69960 1.02144 1.50629 1.30651 0.86545 0.78192 0.78182 0.84861 1.20602 1.21177 1.19781 1.21123 0.92348 0.98396 1.01566 1.21121 1.00107 0.91042 0.95859 1.20604 0.91886 0.98515 1.10478 0.92968 0.91177 0.92950 0.93576 0.91825 0.91192 0.86412 0.85935 0.87075 0.87057 0.86535 0.95314 0.95350 0.92874 0.86320 0.85331 0.86070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.72 9.39 59.85 0.56 1.29 16 2 N -0.64 -6.46 3.41 -187.52 -0.64 -7.10 16 3 C 0.09 0.73 10.15 59.85 0.61 1.34 16 4 C 0.20 2.57 6.55 -83.76 -0.55 2.02 16 5 C -0.19 -2.42 9.29 -39.43 -0.37 -2.79 16 6 C -0.07 -0.94 9.42 -39.29 -0.37 -1.31 16 7 C -0.09 -1.36 5.88 -104.87 -0.62 -1.98 16 8 C -0.04 -0.81 5.88 -104.90 -0.62 -1.42 16 9 C -0.14 -2.40 9.43 -39.25 -0.37 -2.77 16 10 C -0.12 -2.08 10.03 -39.63 -0.40 -2.48 16 11 C -0.13 -2.52 9.69 -39.52 -0.38 -2.90 16 12 C -0.03 -0.70 5.06 -104.67 -0.53 -1.23 16 13 C 0.05 1.24 5.10 -29.03 -0.15 1.09 16 14 C -0.51 -14.47 9.09 -34.44 -0.31 -14.78 16 15 H 0.06 1.63 7.74 -52.49 -0.41 1.22 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.61 13.29 55.43 0.74 -25.87 16 18 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 19 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 20 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 21 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 22 C -0.12 -2.38 9.08 -39.24 -0.36 -2.73 16 23 C -0.06 -0.95 9.42 -39.29 -0.37 -1.32 16 24 C -0.19 -2.57 9.19 -39.43 -0.36 -2.93 16 25 H 0.05 0.37 7.94 -51.93 -0.41 -0.04 16 26 H 0.07 0.37 7.79 -51.93 -0.40 -0.03 16 27 H 0.05 0.37 7.94 -51.94 -0.41 -0.04 16 28 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 29 H 0.06 0.37 7.92 -51.93 -0.41 -0.04 16 30 H 0.07 0.55 6.18 -51.93 -0.32 0.23 16 31 H 0.12 1.21 6.71 -52.49 -0.35 0.85 16 32 H 0.12 1.48 6.20 -52.49 -0.33 1.15 16 33 H 0.11 1.53 6.20 -52.49 -0.33 1.20 16 34 H 0.11 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.12 2.26 8.06 -52.48 -0.42 1.84 16 36 H 0.03 0.78 8.09 -51.93 -0.42 0.36 16 37 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 38 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 39 H 0.12 2.36 6.20 -52.49 -0.33 2.03 16 40 H 0.13 1.94 6.20 -52.49 -0.33 1.61 16 41 H 0.12 1.38 6.12 -52.48 -0.32 1.06 16 LS Contribution 337.55 15.07 5.09 5.09 Total: -1.00 -31.52 337.55 -10.10 -41.62 By element: Atomic # 1 Polarization: 6.48 SS G_CDS: -5.59 Total: 0.90 kcal Atomic # 6 Polarization: -26.70 SS G_CDS: -4.68 Total: -31.37 kcal Atomic # 7 Polarization: -33.07 SS G_CDS: 0.10 Total: -32.97 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -31.52 -10.10 -41.62 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240914367.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 90.235 kcal (2) G-P(sol) polarization free energy of solvation -31.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.710 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.098 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.623 kcal (6) G-S(sol) free energy of system = (1) + (5) 48.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds