Wall clock time and date at job start Tue Mar 31 2020 05:55:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46496 * 119.99974 * 2 1 4 4 C 1.39693 * 119.99852 * 180.02562 * 2 1 3 5 5 C 1.39011 * 120.01254 * 180.02562 * 4 2 1 6 6 C 1.38169 * 120.16551 * 179.97438 * 5 4 2 7 7 C 1.38092 * 120.19956 * 359.72052 * 6 5 4 8 8 C 1.39353 * 120.02786 * 0.55629 * 7 6 5 9 9 C 1.48403 * 120.08203 * 179.71907 * 8 7 6 10 10 C 1.39357 * 120.11730 * 179.74856 * 9 8 7 11 11 C 1.37993 * 119.87653 * 179.97438 * 10 9 8 12 12 C 1.38343 * 120.12189 * 359.97438 * 11 10 9 13 13 C 1.38301 * 120.24383 * 359.76417 * 12 11 10 14 14 C 1.50698 * 119.94571 * 180.27792 * 13 12 11 15 15 C 1.50706 * 109.47074 * 270.23907 * 14 13 12 16 16 H 1.07997 * 120.00126 * 359.97438 * 15 14 13 17 17 C 1.37880 * 119.99528 * 180.02562 * 15 14 13 18 18 N 1.31513 * 119.99499 * 179.97438 * 17 15 14 19 19 Si 1.86791 * 120.00409 * 359.97438 * 17 15 14 20 20 H 1.48493 * 109.47363 * 90.00194 * 19 17 15 21 21 H 1.48500 * 109.47161 * 210.00573 * 19 17 15 22 22 H 1.48504 * 109.47238 * 330.00128 * 19 17 15 23 23 C 1.38043 * 120.11834 * 0.51581 * 13 12 11 24 24 C 1.38685 * 120.01754 * 0.02562 * 4 2 1 25 25 H 1.08994 * 109.47049 * 269.99868 * 1 2 3 26 26 H 1.09005 * 109.46707 * 29.99980 * 1 2 3 27 27 H 1.09001 * 109.47004 * 149.99519 * 1 2 3 28 28 H 1.09000 * 109.47776 * 269.99939 * 3 2 1 29 29 H 1.09004 * 109.46962 * 30.00613 * 3 2 1 30 30 H 1.09006 * 109.46937 * 149.99755 * 3 2 1 31 31 H 1.07990 * 119.91527 * 0.02562 * 5 4 2 32 32 H 1.07996 * 119.89476 * 180.02562 * 6 5 4 33 33 H 1.08004 * 119.98391 * 180.27551 * 7 6 5 34 34 H 1.08004 * 120.05888 * 0.02562 * 10 9 8 35 35 H 1.08003 * 119.93995 * 179.97438 * 11 10 9 36 36 H 1.08001 * 119.88149 * 180.02562 * 12 11 10 37 37 H 1.09003 * 109.46823 * 30.23352 * 14 13 12 38 38 H 1.08996 * 109.47286 * 150.23080 * 14 13 12 39 39 H 0.96996 * 120.00395 * 179.97438 * 18 17 15 40 40 H 1.08002 * 120.06469 * 179.74563 * 23 13 12 41 41 H 1.08002 * 120.09753 * 359.97438 * 24 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1635 -1.2098 -0.0005 5 6 3.5536 -1.2101 0.0000 6 6 4.2476 -2.4049 0.0000 7 6 3.5645 -3.6050 0.0053 8 6 2.1710 -3.6143 -0.0011 9 6 1.4357 -4.9033 -0.0017 10 6 0.0421 -4.9134 -0.0028 11 6 -0.6365 -6.1149 -0.0039 12 6 0.0639 -7.3079 -0.0045 13 6 1.4469 -7.3038 -0.0089 14 6 2.2031 -8.6073 -0.0158 15 6 2.4545 -9.0497 1.4027 16 1 2.1024 -8.4470 2.2268 17 6 3.1351 -10.2234 1.6483 18 7 3.3550 -10.6092 2.8862 19 14 3.7448 -11.2654 0.2230 20 1 5.1171 -10.8387 -0.1507 21 1 3.7634 -12.6943 0.6268 22 1 2.8384 -11.0917 -0.9405 23 6 2.1360 -6.1076 -0.0019 24 6 1.4704 -2.4110 -0.0016 25 1 -0.3633 0.0000 1.0276 26 1 -0.3633 0.8900 -0.5139 27 1 -0.3633 -0.8900 -0.5139 28 1 2.3792 1.5834 -1.0276 29 1 1.6084 2.0283 0.5139 30 1 3.1499 1.1383 0.5139 31 1 4.0924 -0.2742 0.0013 32 1 5.3275 -2.4000 0.0008 33 1 4.1105 -4.5368 0.0098 34 1 -0.5056 -3.9826 -0.0035 35 1 -1.7165 -6.1240 -0.0043 36 1 -0.4712 -8.2461 -0.0057 37 1 1.6157 -9.3653 -0.5341 38 1 3.1553 -8.4722 -0.5286 39 1 3.8335 -11.4351 3.0591 40 1 3.2160 -6.1054 -0.0012 41 1 0.3904 -2.4132 -0.0016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001240985034.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:55:55 Heat of formation + Delta-G solvation = 54.738621 kcal Electronic energy + Delta-G solvation = -20551.839963 eV Core-core repulsion = 17589.281228 eV Total energy + Delta-G solvation = -2962.558734 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.82485 -38.46606 -36.19395 -33.58611 -32.22003 -31.28824 -30.35656 -29.04953 -27.99420 -27.37321 -24.90617 -23.24824 -22.65650 -21.73412 -20.17767 -19.49776 -17.55703 -16.76348 -16.00535 -15.77801 -15.42287 -15.22539 -14.56651 -14.47664 -14.13959 -13.81415 -13.40508 -13.16200 -12.94817 -12.85276 -12.80970 -12.32295 -12.21486 -12.14635 -11.94051 -11.71530 -11.37543 -11.03976 -10.95293 -10.60819 -10.27958 -10.12800 -9.91503 -9.83928 -9.38061 -9.14423 -8.57753 -8.01046 -7.68054 -7.24063 -6.06641 -4.05844 1.07378 1.71363 2.05715 2.39686 3.00699 3.29233 3.37002 3.39788 3.99366 4.42046 4.57566 4.74450 4.79902 4.94290 5.04566 5.08345 5.23989 5.25326 5.34368 5.41891 5.42248 5.49454 5.51867 5.57645 5.64998 5.77092 5.87846 5.97603 6.08727 6.17256 6.30919 6.48212 6.62191 6.65607 6.75269 6.88472 6.94374 7.02452 7.07026 7.17042 7.20484 7.47378 7.58748 7.58927 7.71905 8.50355 8.99057 9.53451 11.06358 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026122 B = 0.003581 C = 0.003297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.640100 B = 7816.296751 C = 8491.567500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.643 5.643 3 C 0.096 3.904 4 C 0.209 3.791 5 C -0.204 4.204 6 C -0.072 4.072 7 C -0.166 4.166 8 C 0.017 3.983 9 C -0.059 4.059 10 C -0.131 4.131 11 C -0.124 4.124 12 C -0.115 4.115 13 C -0.030 4.030 14 C 0.014 3.986 15 C -0.513 4.513 16 H 0.074 0.926 17 C 0.069 3.931 18 N -0.900 5.900 19 Si 0.878 3.122 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.265 1.265 23 C -0.103 4.103 24 C -0.191 4.191 25 H 0.046 0.954 26 H 0.063 0.937 27 H 0.069 0.931 28 H 0.045 0.955 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.118 0.882 32 H 0.121 0.879 33 H 0.126 0.874 34 H 0.113 0.887 35 H 0.114 0.886 36 H 0.119 0.881 37 H 0.028 0.972 38 H 0.024 0.976 39 H 0.264 0.736 40 H 0.123 0.877 41 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.200 21.411 -7.882 23.199 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.356 5.356 3 C -0.047 4.047 4 C 0.109 3.891 5 C -0.226 4.226 6 C -0.090 4.090 7 C -0.186 4.186 8 C 0.016 3.984 9 C -0.059 4.059 10 C -0.149 4.149 11 C -0.142 4.142 12 C -0.133 4.133 13 C -0.030 4.030 14 C -0.023 4.023 15 C -0.551 4.551 16 H 0.092 0.908 17 C -0.133 4.133 18 N -0.538 5.538 19 Si 0.705 3.295 20 H -0.201 1.201 21 H -0.213 1.213 22 H -0.189 1.189 23 C -0.121 4.121 24 C -0.213 4.213 25 H 0.065 0.935 26 H 0.082 0.918 27 H 0.087 0.913 28 H 0.063 0.937 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.136 0.864 32 H 0.139 0.861 33 H 0.144 0.856 34 H 0.131 0.869 35 H 0.133 0.867 36 H 0.137 0.863 37 H 0.047 0.953 38 H 0.042 0.958 39 H 0.074 0.926 40 H 0.141 0.859 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -4.219 21.440 -7.768 23.191 hybrid contribution 0.336 -0.578 -0.469 0.817 sum -3.883 20.862 -8.237 22.763 Atomic orbital electron populations 1.21600 0.79765 1.02464 1.01065 1.46235 1.04804 1.03070 1.81514 1.21573 0.97259 0.85008 1.00850 1.17680 0.91165 0.85379 0.94830 1.20631 0.91946 0.98455 1.11611 1.20803 0.99361 0.91744 0.97112 1.21133 0.93444 0.98332 1.05650 1.18611 0.92832 0.91546 0.95423 1.18707 0.92991 0.91740 1.02497 1.20933 0.93225 0.97491 1.03209 1.20953 0.99149 0.92543 1.01518 1.21150 0.94189 0.97710 1.00264 1.20222 0.93614 0.96097 0.93094 1.18822 0.94832 0.90016 0.98660 1.20937 1.36450 1.07233 0.90453 0.90792 1.25000 0.95448 0.97289 0.95514 1.69900 1.41560 1.23456 1.18903 0.86808 0.79751 0.79714 0.83270 1.20135 1.21268 1.18912 1.21152 0.99912 0.90957 1.00097 1.20687 0.99508 0.90287 1.10830 0.93517 0.91832 0.91283 0.93698 0.91855 0.91358 0.86434 0.86138 0.85650 0.86945 0.86747 0.86272 0.95339 0.95807 0.92603 0.85922 0.85856 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.77 10.19 59.85 0.61 1.38 16 2 N -0.64 -6.64 3.41 -187.58 -0.64 -7.28 16 3 C 0.10 0.72 10.19 59.84 0.61 1.33 16 4 C 0.21 2.70 6.55 -83.82 -0.55 2.15 16 5 C -0.20 -2.51 9.20 -39.32 -0.36 -2.88 16 6 C -0.07 -0.93 10.03 -39.66 -0.40 -1.33 16 7 C -0.17 -2.52 9.42 -39.22 -0.37 -2.89 16 8 C 0.02 0.26 5.87 -104.93 -0.62 -0.35 16 9 C -0.06 -1.04 5.88 -104.89 -0.62 -1.66 16 10 C -0.13 -2.11 9.43 -39.25 -0.37 -2.48 16 11 C -0.12 -2.03 10.03 -39.63 -0.40 -2.43 16 12 C -0.12 -2.20 9.69 -39.52 -0.38 -2.59 16 13 C -0.03 -0.64 5.06 -104.67 -0.53 -1.18 16 14 C 0.01 0.33 4.17 -29.03 -0.12 0.21 16 15 C -0.51 -14.62 9.65 -34.44 -0.33 -14.96 16 16 H 0.07 2.32 7.98 -52.49 -0.42 1.90 16 17 C 0.07 2.00 5.47 -17.82 -0.10 1.90 16 18 N -0.90 -27.68 13.96 55.43 0.77 -26.90 16 19 Si 0.88 21.41 27.47 -169.99 -4.67 16.74 16 20 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.26 -6.17 6.54 56.52 0.37 -5.80 16 23 C -0.10 -2.04 9.08 -39.25 -0.36 -2.39 16 24 C -0.19 -2.69 8.58 -39.05 -0.34 -3.02 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.06 0.39 8.07 -51.93 -0.42 -0.03 16 27 H 0.07 0.58 6.19 -51.93 -0.32 0.26 16 28 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.06 0.37 8.07 -51.93 -0.42 -0.05 16 30 H 0.07 0.50 6.19 -51.93 -0.32 0.17 16 31 H 0.12 1.18 6.13 -52.49 -0.32 0.85 16 32 H 0.12 1.28 8.06 -52.49 -0.42 0.85 16 33 H 0.13 1.88 6.20 -52.48 -0.33 1.56 16 34 H 0.11 1.50 6.21 -52.48 -0.33 1.17 16 35 H 0.11 1.53 8.06 -52.48 -0.42 1.10 16 36 H 0.12 2.17 8.06 -52.49 -0.42 1.75 16 37 H 0.03 0.67 7.14 -51.93 -0.37 0.30 16 38 H 0.02 0.56 7.51 -51.93 -0.39 0.17 16 39 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 40 H 0.12 2.34 6.20 -52.49 -0.33 2.01 16 41 H 0.12 1.55 4.28 -52.49 -0.22 1.33 16 LS Contribution 333.03 15.07 5.02 5.02 Total: -1.00 -32.10 333.03 -9.60 -41.69 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -5.46 Total: 1.90 kcal Atomic # 6 Polarization: -26.55 SS G_CDS: -4.61 Total: -31.16 kcal Atomic # 7 Polarization: -34.32 SS G_CDS: 0.13 Total: -34.19 kcal Atomic # 14 Polarization: 21.41 SS G_CDS: -4.67 Total: 16.74 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -32.10 -9.60 -41.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240985034.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.431 kcal (2) G-P(sol) polarization free energy of solvation -32.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.334 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.596 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.693 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.739 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds