Wall clock time and date at job start Tue Mar 31 2020 05:15:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47371 * 2 1 4 4 C 1.53001 * 109.46916 * 180.02562 * 3 2 1 5 5 C 1.50707 * 109.46722 * 179.97438 * 4 3 2 6 6 C 1.38387 * 119.84982 * 90.00057 * 5 4 3 7 7 C 1.37944 * 120.14291 * 179.97438 * 6 5 4 8 8 C 1.39608 * 119.85052 * 0.02562 * 7 6 5 9 9 C 1.47964 * 120.14104 * 179.97438 * 8 7 6 10 10 C 1.39895 * 119.44883 * 179.97438 * 9 8 7 11 11 C 1.36606 * 119.46879 * 180.02562 * 10 9 8 12 12 C 1.41303 * 118.41102 * 0.27572 * 11 10 9 13 13 C 1.41050 * 120.55247 * 179.72036 * 12 11 10 14 14 H 1.08003 * 120.00857 * 330.27080 * 13 12 11 15 15 C 1.40030 * 120.00096 * 150.26612 * 13 12 11 16 16 N 1.30783 * 120.00513 * 161.74857 * 15 13 12 17 17 Si 1.86806 * 119.99665 * 341.74748 * 15 13 12 18 18 H 1.48503 * 109.46996 * 95.41891 * 17 15 13 19 19 H 1.48497 * 109.47199 * 215.41295 * 17 15 13 20 20 H 1.48496 * 109.47499 * 335.41845 * 17 15 13 21 21 C 1.40948 * 118.89406 * 359.46021 * 12 11 10 22 22 N 1.31263 * 120.40017 * 0.54796 * 21 12 11 23 23 C 1.39603 * 119.71228 * 0.25019 * 8 7 6 24 24 C 1.37941 * 119.85273 * 359.49515 * 23 8 7 25 25 H 1.08992 * 109.47429 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46725 * 300.00323 * 1 2 3 27 27 H 1.09002 * 109.47100 * 59.99496 * 1 2 3 28 28 H 1.08998 * 109.47084 * 239.99783 * 2 1 3 29 29 H 1.09007 * 109.47253 * 120.00020 * 2 1 3 30 30 H 1.08998 * 109.47194 * 59.99851 * 3 2 1 31 31 H 1.09000 * 109.46892 * 299.99766 * 3 2 1 32 32 H 1.08993 * 109.47158 * 60.00110 * 4 3 2 33 33 H 1.09000 * 109.46951 * 299.99487 * 4 3 2 34 34 H 1.08000 * 119.93144 * 359.95387 * 6 5 4 35 35 H 1.08001 * 120.07255 * 180.02562 * 7 6 5 36 36 H 1.08000 * 120.26683 * 0.02562 * 10 9 8 37 37 H 1.07994 * 120.79779 * 179.97438 * 11 10 9 38 38 H 0.97000 * 120.00310 * 180.02562 * 16 15 13 39 39 H 1.07997 * 119.80019 * 180.24991 * 21 12 11 40 40 H 1.08006 * 120.07639 * 179.72308 * 23 8 7 41 41 H 1.07999 * 119.92793 * 180.22663 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0724 2.8632 -0.0013 6 6 4.3025 3.5130 1.1987 7 6 4.7629 4.8133 1.2052 8 6 4.9960 5.4740 -0.0024 9 6 5.4893 6.8690 -0.0030 10 6 5.7185 7.5169 -1.2214 11 6 6.1744 8.8047 -1.2224 12 6 6.4048 9.4373 0.0199 13 6 6.8810 10.7640 0.0716 14 1 7.5080 11.1441 -0.7214 15 6 6.5408 11.5884 1.1511 16 7 7.2402 12.6658 1.3970 17 14 5.0877 11.1494 2.2399 18 1 5.5689 10.4038 3.4306 19 1 4.4038 12.3927 2.6777 20 1 4.1355 10.3028 1.4773 21 6 6.1455 8.7224 1.2067 22 7 5.7078 7.4860 1.1551 23 6 4.7563 4.8146 -1.2093 24 6 4.3011 3.5125 -1.2018 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9329 0.9287 -0.8908 33 1 3.9337 0.9285 0.8892 34 1 4.1210 3.0010 2.1322 35 1 4.9425 5.3192 2.1423 36 1 5.5366 7.0032 -2.1538 37 1 6.3590 9.3252 -2.1505 38 1 7.0048 13.2367 2.1450 39 1 6.3126 9.1931 2.1642 40 1 4.9304 5.3216 -2.1470 41 1 4.1187 3.0000 -2.1348 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241050090.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:53 Heat of formation + Delta-G solvation = 16.505140 kcal Electronic energy + Delta-G solvation = -20193.145487 eV Core-core repulsion = 17228.928825 eV Total energy + Delta-G solvation = -2964.216662 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -39.35104 -38.25559 -35.80965 -34.18066 -32.54581 -31.53007 -30.66004 -30.22296 -28.28400 -25.57407 -23.69316 -23.08808 -21.65334 -21.39555 -21.08537 -20.03554 -17.83184 -16.74201 -15.82843 -15.58917 -15.17703 -14.88979 -14.18601 -14.11714 -13.94885 -13.78296 -13.18126 -13.09813 -12.92714 -12.84317 -12.74565 -12.44562 -12.05239 -11.82628 -11.46458 -11.40068 -11.23202 -11.10866 -10.94454 -10.82550 -10.66684 -10.49973 -10.38728 -10.12575 -9.54576 -8.74809 -8.61936 -8.50724 -8.24267 -7.36164 -7.25636 -4.70989 1.41882 1.86760 2.51527 2.58979 3.00296 3.09895 3.18561 3.77968 4.08388 4.52274 4.70497 4.77402 4.95130 5.08667 5.18232 5.23254 5.33117 5.35193 5.47205 5.58747 5.59393 5.64387 5.68529 5.80542 5.83899 5.85553 5.97281 5.99968 6.14959 6.17618 6.23830 6.29506 6.43076 6.48631 6.54262 6.73750 6.79693 6.97516 7.03145 7.10935 7.29472 7.47482 7.51296 7.77267 7.97911 8.28179 8.41934 9.29612 9.73556 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.033644 B = 0.003106 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.051534 B = 9013.013524 C = 9416.737299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.115 4.115 4 C -0.073 4.073 5 C -0.113 4.113 6 C -0.116 4.116 7 C -0.110 4.110 8 C 0.014 3.986 9 C -0.008 4.008 10 C -0.103 4.103 11 C -0.184 4.184 12 C 0.045 3.955 13 C -0.415 4.415 14 H 0.097 0.903 15 C 0.081 3.919 16 N -0.784 5.784 17 Si 0.912 3.088 18 H -0.262 1.262 19 H -0.284 1.284 20 H -0.245 1.245 21 C -0.027 4.027 22 N -0.436 5.436 23 C -0.131 4.131 24 C -0.114 4.114 25 H 0.051 0.949 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.066 0.934 34 H 0.113 0.887 35 H 0.128 0.872 36 H 0.108 0.892 37 H 0.112 0.888 38 H 0.292 0.708 39 H 0.133 0.867 40 H 0.119 0.881 41 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.272 -16.374 -1.950 18.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.152 4.152 4 C -0.111 4.111 5 C -0.113 4.113 6 C -0.134 4.134 7 C -0.128 4.128 8 C 0.013 3.987 9 C -0.141 4.141 10 C -0.123 4.123 11 C -0.209 4.209 12 C 0.040 3.960 13 C -0.443 4.443 14 H 0.115 0.885 15 C -0.141 4.141 16 N -0.406 5.406 17 Si 0.737 3.263 18 H -0.187 1.187 19 H -0.211 1.211 20 H -0.168 1.168 21 C -0.192 4.192 22 N -0.143 5.143 23 C -0.150 4.150 24 C -0.132 4.132 25 H 0.070 0.930 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.078 0.922 29 H 0.079 0.921 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.131 0.869 35 H 0.146 0.854 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.103 0.897 39 H 0.150 0.850 40 H 0.137 0.863 41 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -8.336 -16.551 -1.094 18.564 hybrid contribution -0.267 0.662 -0.299 0.774 sum -8.602 -15.890 -1.394 18.123 Atomic orbital electron populations 1.21779 0.96056 1.01328 1.01899 1.21558 0.95735 0.97150 1.01823 1.21620 0.94878 0.96252 1.02473 1.20517 0.95201 0.93210 1.02157 1.19721 1.02311 0.96011 0.93299 1.20880 1.00588 0.94974 0.96953 1.21263 0.99151 0.93981 0.98436 1.18643 0.95506 0.91832 0.92747 1.18843 1.12628 0.93813 0.88855 1.21289 0.98626 0.95171 0.97251 1.21041 1.06985 0.95563 0.97337 1.18698 0.90378 0.94551 0.92369 1.19567 1.24542 0.94606 1.05583 0.88488 1.26307 0.97356 0.94104 0.96367 1.69649 1.33954 1.11547 1.25431 0.86299 0.81545 0.78143 0.80335 1.18718 1.21093 1.16791 1.22456 1.08674 0.90852 0.97219 1.66919 1.08073 1.10357 1.28970 1.21146 1.01708 0.94726 0.97464 1.20759 1.00750 0.94719 0.96961 0.92991 0.92760 0.92765 0.92161 0.92149 0.91888 0.91914 0.91601 0.91581 0.86926 0.85446 0.87411 0.87014 0.89702 0.85023 0.86274 0.86887 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.15 9.91 37.16 0.37 -0.78 16 2 C -0.13 -1.00 5.93 -26.73 -0.16 -1.16 16 3 C -0.11 -1.11 5.20 -26.73 -0.14 -1.25 16 4 C -0.07 -0.78 5.34 -27.88 -0.15 -0.92 16 5 C -0.11 -1.56 5.14 -104.51 -0.54 -2.10 16 6 C -0.12 -1.75 9.68 -39.63 -0.38 -2.14 16 7 C -0.11 -1.99 9.57 -39.18 -0.38 -2.36 16 8 C 0.01 0.26 5.88 -104.89 -0.62 -0.35 16 9 C -0.01 -0.18 6.74 -82.75 -0.56 -0.73 16 10 C -0.10 -2.19 9.38 -39.55 -0.37 -2.56 16 11 C -0.18 -4.17 9.88 -39.01 -0.39 -4.55 16 12 C 0.05 1.12 5.12 -106.64 -0.55 0.58 16 13 C -0.42 -10.57 9.58 -37.84 -0.36 -10.94 16 14 H 0.10 2.54 8.06 -52.48 -0.42 2.12 16 15 C 0.08 2.00 5.41 -17.33 -0.09 1.90 16 16 N -0.78 -19.42 13.93 55.55 0.77 -18.65 16 17 Si 0.91 19.94 24.52 -169.99 -4.17 15.78 16 18 H -0.26 -5.59 6.71 56.52 0.38 -5.21 16 19 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 20 H -0.24 -5.68 6.85 56.52 0.39 -5.30 16 21 C -0.03 -0.66 8.36 -16.77 -0.14 -0.80 16 22 N -0.44 -10.56 9.39 -9.10 -0.09 -10.64 16 23 C -0.13 -2.18 9.42 -39.18 -0.37 -2.55 16 24 C -0.11 -1.63 9.68 -39.64 -0.38 -2.01 16 25 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 26 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 27 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 29 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 30 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 32 H 0.07 0.64 8.08 -51.93 -0.42 0.22 16 33 H 0.07 0.65 8.08 -51.93 -0.42 0.23 16 34 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 35 H 0.13 2.39 7.52 -52.49 -0.39 2.00 16 36 H 0.11 1.92 6.15 -52.49 -0.32 1.60 16 37 H 0.11 2.29 8.06 -52.49 -0.42 1.87 16 38 H 0.29 6.49 8.30 -40.82 -0.34 6.16 16 39 H 0.13 3.19 4.70 -52.49 -0.25 2.94 16 40 H 0.12 1.80 6.15 -52.48 -0.32 1.48 16 41 H 0.11 1.33 8.06 -52.49 -0.42 0.91 16 LS Contribution 336.93 15.07 5.08 5.08 Total: -1.00 -26.69 336.93 -9.55 -36.24 By element: Atomic # 1 Polarization: 10.89 SS G_CDS: -5.95 Total: 4.94 kcal Atomic # 6 Polarization: -27.54 SS G_CDS: -5.20 Total: -32.74 kcal Atomic # 7 Polarization: -29.98 SS G_CDS: 0.69 Total: -29.29 kcal Atomic # 14 Polarization: 19.94 SS G_CDS: -4.17 Total: 15.78 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -26.69 -9.55 -36.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241050090.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.742 kcal (2) G-P(sol) polarization free energy of solvation -26.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.055 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.505 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds