Wall clock time and date at job start Tue Mar 31 2020 05:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53002 * 109.47371 * 2 1 4 4 C 1.53001 * 109.46916 * 180.02562 * 3 2 1 5 5 C 1.50707 * 109.46722 * 179.97438 * 4 3 2 6 6 C 1.38387 * 119.84982 * 90.00057 * 5 4 3 7 7 C 1.37944 * 120.14291 * 179.97438 * 6 5 4 8 8 C 1.39608 * 119.85052 * 0.02562 * 7 6 5 9 9 C 1.47964 * 120.14104 * 179.97438 * 8 7 6 10 10 C 1.39895 * 119.44883 * 179.97438 * 9 8 7 11 11 C 1.36606 * 119.46879 * 180.02562 * 10 9 8 12 12 C 1.41303 * 118.41102 * 0.27572 * 11 10 9 13 13 C 1.41050 * 120.55247 * 179.72036 * 12 11 10 14 14 H 1.08003 * 120.00857 * 330.27080 * 13 12 11 15 15 C 1.40030 * 120.00096 * 150.26612 * 13 12 11 16 16 N 1.30783 * 120.00513 * 161.74857 * 15 13 12 17 17 Si 1.86806 * 119.99665 * 341.74748 * 15 13 12 18 18 H 1.48503 * 109.46996 * 95.41891 * 17 15 13 19 19 H 1.48497 * 109.47199 * 215.41295 * 17 15 13 20 20 H 1.48496 * 109.47499 * 335.41845 * 17 15 13 21 21 C 1.40948 * 118.89406 * 359.46021 * 12 11 10 22 22 N 1.31263 * 120.40017 * 0.54796 * 21 12 11 23 23 C 1.39603 * 119.71228 * 0.25019 * 8 7 6 24 24 C 1.37941 * 119.85273 * 359.49515 * 23 8 7 25 25 H 1.08992 * 109.47429 * 180.02562 * 1 2 3 26 26 H 1.09005 * 109.46725 * 300.00323 * 1 2 3 27 27 H 1.09002 * 109.47100 * 59.99496 * 1 2 3 28 28 H 1.08998 * 109.47084 * 239.99783 * 2 1 3 29 29 H 1.09007 * 109.47253 * 120.00020 * 2 1 3 30 30 H 1.08998 * 109.47194 * 59.99851 * 3 2 1 31 31 H 1.09000 * 109.46892 * 299.99766 * 3 2 1 32 32 H 1.08993 * 109.47158 * 60.00110 * 4 3 2 33 33 H 1.09000 * 109.46951 * 299.99487 * 4 3 2 34 34 H 1.08000 * 119.93144 * 359.95387 * 6 5 4 35 35 H 1.08001 * 120.07255 * 180.02562 * 7 6 5 36 36 H 1.08000 * 120.26683 * 0.02562 * 10 9 8 37 37 H 1.07994 * 120.79779 * 179.97438 * 11 10 9 38 38 H 0.97000 * 120.00310 * 180.02562 * 16 15 13 39 39 H 1.07997 * 119.80019 * 180.24991 * 21 12 11 40 40 H 1.08006 * 120.07639 * 179.72308 * 23 8 7 41 41 H 1.07999 * 119.92793 * 180.22663 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0724 2.8632 -0.0013 6 6 4.3025 3.5130 1.1987 7 6 4.7629 4.8133 1.2052 8 6 4.9960 5.4740 -0.0024 9 6 5.4893 6.8690 -0.0030 10 6 5.7185 7.5169 -1.2214 11 6 6.1744 8.8047 -1.2224 12 6 6.4048 9.4373 0.0199 13 6 6.8810 10.7640 0.0716 14 1 7.5080 11.1441 -0.7214 15 6 6.5408 11.5884 1.1511 16 7 7.2402 12.6658 1.3970 17 14 5.0877 11.1494 2.2399 18 1 5.5689 10.4038 3.4306 19 1 4.4038 12.3927 2.6777 20 1 4.1355 10.3028 1.4773 21 6 6.1455 8.7224 1.2067 22 7 5.7078 7.4860 1.1551 23 6 4.7563 4.8146 -1.2093 24 6 4.3011 3.5125 -1.2018 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9329 0.9287 -0.8908 33 1 3.9337 0.9285 0.8892 34 1 4.1210 3.0010 2.1322 35 1 4.9425 5.3192 2.1423 36 1 5.5366 7.0032 -2.1538 37 1 6.3590 9.3252 -2.1505 38 1 7.0048 13.2367 2.1450 39 1 6.3126 9.1931 2.1642 40 1 4.9304 5.3216 -2.1470 41 1 4.1187 3.0000 -2.1348 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241050090.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:52 Heat of formation + Delta-G solvation = 4.827469 kcal Electronic energy + Delta-G solvation = -20193.651869 eV Core-core repulsion = 17228.928825 eV Total energy + Delta-G solvation = -2964.723044 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.88830 -39.72489 -36.71748 -35.89202 -33.85406 -33.25378 -32.02858 -31.58264 -29.49171 -27.05478 -24.88406 -24.67106 -23.05924 -22.81830 -21.92042 -21.36667 -19.67562 -18.30422 -17.40252 -16.75460 -16.47323 -16.26095 -15.47762 -15.44454 -15.28033 -14.93754 -14.79309 -14.68517 -14.22860 -14.08057 -13.77736 -13.61382 -13.56217 -13.05969 -13.00937 -12.87277 -12.49704 -12.25987 -12.14019 -11.99631 -11.90260 -11.70405 -11.48694 -11.33216 -11.31099 -10.52101 -10.19583 -10.04345 -9.75624 -9.08984 -8.93827 -6.60528 -0.05205 0.61325 0.71785 0.93948 1.22283 1.34863 1.40463 2.00659 2.46272 2.98421 3.53533 3.61864 3.85370 3.96483 4.08913 4.20020 4.22727 4.27954 4.37254 4.39592 4.44961 4.56115 4.64681 4.73233 4.82241 4.84256 4.89026 4.97148 5.02538 5.05090 5.09480 5.20107 5.24683 5.27156 5.35445 5.43482 5.43778 5.52308 5.55442 5.68481 5.80914 5.89106 5.96033 6.08486 6.21960 6.43614 6.56668 7.47168 7.96830 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.033644 B = 0.003106 C = 0.002973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 832.051534 B = 9013.013524 C = 9416.737299 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.122 4.122 3 C -0.112 4.112 4 C -0.072 4.072 5 C -0.095 4.095 6 C -0.120 4.120 7 C -0.122 4.122 8 C -0.031 4.031 9 C 0.004 3.996 10 C -0.107 4.107 11 C -0.185 4.185 12 C 0.028 3.972 13 C -0.451 4.451 14 H 0.075 0.925 15 C 0.057 3.943 16 N -0.818 5.818 17 Si 0.958 3.042 18 H -0.258 1.258 19 H -0.264 1.264 20 H -0.268 1.268 21 C -0.047 4.047 22 N -0.459 5.459 23 C -0.125 4.125 24 C -0.114 4.114 25 H 0.060 0.940 26 H 0.049 0.951 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.065 0.935 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.135 0.865 35 H 0.109 0.891 36 H 0.148 0.852 37 H 0.130 0.870 38 H 0.302 0.698 39 H 0.128 0.872 40 H 0.135 0.865 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.970 -20.181 -3.049 22.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C -0.149 4.149 4 C -0.109 4.109 5 C -0.095 4.095 6 C -0.138 4.138 7 C -0.141 4.141 8 C -0.032 4.032 9 C -0.132 4.132 10 C -0.126 4.126 11 C -0.211 4.211 12 C 0.024 3.976 13 C -0.480 4.480 14 H 0.093 0.907 15 C -0.162 4.162 16 N -0.442 5.442 17 Si 0.782 3.218 18 H -0.184 1.184 19 H -0.189 1.189 20 H -0.193 1.193 21 C -0.209 4.209 22 N -0.166 5.166 23 C -0.144 4.144 24 C -0.131 4.131 25 H 0.079 0.921 26 H 0.068 0.932 27 H 0.071 0.929 28 H 0.087 0.913 29 H 0.084 0.916 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.153 0.847 35 H 0.127 0.873 36 H 0.166 0.834 37 H 0.148 0.852 38 H 0.113 0.887 39 H 0.146 0.854 40 H 0.153 0.847 41 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -10.019 -20.324 -2.167 22.763 hybrid contribution 0.139 1.374 -0.076 1.383 sum -9.880 -18.950 -2.243 21.488 Atomic orbital electron populations 1.21794 0.95885 1.01909 1.01663 1.21530 0.95882 0.95991 1.02528 1.21579 0.94147 0.97352 1.01868 1.20601 0.95638 0.90954 1.03696 1.20197 0.99365 0.97400 0.92565 1.21129 0.99997 0.93859 0.98802 1.21277 0.99952 0.95351 0.97490 1.18710 0.98945 0.90911 0.94584 1.19604 1.09649 0.95163 0.88765 1.21671 0.97693 0.94679 0.98594 1.21386 1.06014 0.96317 0.97347 1.18840 0.90957 0.94478 0.93367 1.19470 1.26723 0.95572 1.06227 0.90707 1.26738 0.98607 0.93955 0.96940 1.69646 1.35218 1.12558 1.26752 0.85601 0.79069 0.78166 0.78961 1.18354 1.18917 1.19280 1.22464 1.09798 0.91370 0.97262 1.66977 1.09202 1.10185 1.30256 1.21371 1.00636 0.95595 0.96825 1.21166 0.99444 0.93867 0.98646 0.92055 0.93170 0.92884 0.91269 0.91637 0.92852 0.92260 0.89775 0.90458 0.84739 0.87274 0.83437 0.85244 0.88703 0.85444 0.84745 0.83451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.88 9.91 71.98 0.71 -1.16 16 2 C -0.12 -1.49 5.93 30.59 0.18 -1.31 16 3 C -0.11 -1.74 5.20 30.60 0.16 -1.58 16 4 C -0.07 -1.17 5.34 29.85 0.16 -1.01 16 5 C -0.09 -2.23 5.14 -19.79 -0.10 -2.33 16 6 C -0.12 -3.31 9.68 22.24 0.22 -3.09 16 7 C -0.12 -4.29 9.57 22.53 0.22 -4.08 16 8 C -0.03 -1.15 5.88 -20.04 -0.12 -1.27 16 9 C 0.00 0.18 6.74 41.94 0.28 0.46 16 10 C -0.11 -4.39 9.38 22.29 0.21 -4.18 16 11 C -0.19 -8.39 9.88 22.64 0.22 -8.16 16 12 C 0.03 1.45 5.12 -21.17 -0.11 1.34 16 13 C -0.45 -24.21 9.58 23.39 0.22 -23.99 16 14 H 0.07 4.19 8.06 -2.91 -0.02 4.17 16 15 C 0.06 2.91 5.41 85.28 0.46 3.37 16 16 N -0.82 -42.12 13.93 21.84 0.30 -41.82 16 17 Si 0.96 42.49 24.52 68.60 1.68 44.17 16 18 H -0.26 -11.12 6.71 99.48 0.67 -10.46 16 19 H -0.26 -10.63 7.11 99.48 0.71 -9.93 16 20 H -0.27 -12.79 6.85 99.48 0.68 -12.11 16 21 C -0.05 -2.39 8.36 85.44 0.71 -1.68 16 22 N -0.46 -22.63 9.39 -182.71 -1.72 -24.34 16 23 C -0.13 -3.73 9.42 22.53 0.21 -3.52 16 24 C -0.11 -2.73 9.68 22.23 0.22 -2.52 16 25 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 26 H 0.05 0.64 8.14 -2.38 -0.02 0.62 16 27 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 28 H 0.07 0.75 8.14 -2.39 -0.02 0.73 16 29 H 0.06 0.75 8.14 -2.38 -0.02 0.73 16 30 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 32 H 0.08 1.15 8.08 -2.39 -0.02 1.13 16 33 H 0.08 1.15 8.08 -2.39 -0.02 1.13 16 34 H 0.13 3.06 8.06 -2.91 -0.02 3.03 16 35 H 0.11 4.17 7.52 -2.91 -0.02 4.15 16 36 H 0.15 4.77 6.15 -2.91 -0.02 4.75 16 37 H 0.13 5.27 8.06 -2.91 -0.02 5.25 16 38 H 0.30 13.83 8.30 -92.71 -0.77 13.06 16 39 H 0.13 6.45 4.70 -2.91 -0.01 6.44 16 40 H 0.13 3.51 6.15 -2.91 -0.02 3.49 16 41 H 0.15 2.59 8.06 -2.91 -0.02 2.57 16 Total: -1.00 -59.91 336.93 5.08 -54.83 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: 0.95 Total: 21.86 kcal Atomic # 6 Polarization: -58.56 SS G_CDS: 3.86 Total: -54.70 kcal Atomic # 7 Polarization: -64.75 SS G_CDS: -1.41 Total: -66.16 kcal Atomic # 14 Polarization: 42.49 SS G_CDS: 1.68 Total: 44.17 kcal Total: -59.91 5.08 -54.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241050090.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.656 kcal (2) G-P(sol) polarization free energy of solvation -59.905 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.829 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.827 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds