Wall clock time and date at job start Tue Mar 31 2020 05:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47187 * 2 1 4 4 C 1.52999 * 109.46858 * 180.02562 * 3 2 1 5 5 C 1.50702 * 109.46882 * 179.97438 * 4 3 2 6 6 C 1.38411 * 119.84143 * 89.99857 * 5 4 3 7 7 C 1.37916 * 120.14658 * 179.97438 * 6 5 4 8 8 C 1.39674 * 119.84763 * 0.02562 * 7 6 5 9 9 C 1.47828 * 120.14877 * 179.97438 * 8 7 6 10 10 N 1.32578 * 119.99255 * 316.14164 * 9 8 7 11 11 C 1.31738 * 121.71850 * 179.97438 * 10 9 8 12 12 C 1.38866 * 121.50881 * 0.02562 * 11 10 9 13 13 C 1.36875 * 119.79879 * 359.97438 * 12 11 10 14 14 C 1.41131 * 118.39682 * 0.27535 * 13 12 11 15 15 C 1.40882 * 120.72137 * 179.71959 * 14 13 12 16 16 H 1.08001 * 120.00129 * 151.61536 * 15 14 13 17 17 C 1.40081 * 120.00079 * 331.61347 * 15 14 13 18 18 N 1.30777 * 119.99878 * 348.29740 * 17 15 14 19 19 Si 1.86800 * 119.99865 * 168.29059 * 17 15 14 20 20 H 1.48502 * 109.46645 * 90.00494 * 19 17 15 21 21 H 1.48505 * 109.46820 * 210.00217 * 19 17 15 22 22 H 1.48498 * 109.47261 * 330.00660 * 19 17 15 23 23 C 1.39669 * 119.70331 * 0.25232 * 8 7 6 24 24 C 1.37922 * 119.83884 * 359.48993 * 23 8 7 25 25 H 1.09007 * 109.47030 * 300.00421 * 1 2 3 26 26 H 1.08996 * 109.47420 * 60.00326 * 1 2 3 27 27 H 1.09006 * 109.47455 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46995 * 239.99908 * 2 1 3 29 29 H 1.09001 * 109.46984 * 119.99724 * 2 1 3 30 30 H 1.08996 * 109.47147 * 59.99529 * 3 2 1 31 31 H 1.09001 * 109.46933 * 299.99755 * 3 2 1 32 32 H 1.08999 * 109.47270 * 59.99941 * 4 3 2 33 33 H 1.08996 * 109.47474 * 299.99505 * 4 3 2 34 34 H 1.07995 * 119.92583 * 0.02562 * 6 5 4 35 35 H 1.08004 * 120.07528 * 180.02562 * 7 6 5 36 36 H 1.08008 * 119.24276 * 180.02562 * 11 10 9 37 37 H 1.08003 * 120.09616 * 179.97438 * 12 11 10 38 38 H 1.08001 * 120.80390 * 179.97438 * 13 12 11 39 39 H 0.96994 * 119.99509 * 179.97438 * 18 17 15 40 40 H 1.07992 * 120.08190 * 179.72339 * 23 8 7 41 41 H 1.08003 * 119.92483 * 180.25153 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0723 2.8633 -0.0013 6 6 4.3024 3.5130 1.1990 7 6 4.7626 4.8130 1.2058 8 6 4.9960 5.4741 -0.0023 9 6 5.4888 6.8679 -0.0028 10 7 4.9600 7.7581 0.8252 11 6 5.3733 9.0086 0.8537 12 6 6.3855 9.4577 0.0157 13 6 6.9752 8.5905 -0.8640 14 6 6.5239 7.2537 -0.8930 15 6 7.0922 6.3213 -1.7832 16 1 7.1092 5.2720 -1.5281 17 6 7.6353 6.7552 -2.9994 18 7 7.4160 7.9757 -3.4150 19 14 8.6727 5.5906 -4.0274 20 1 7.7969 4.8475 -4.9687 21 1 9.6770 6.3695 -4.7957 22 1 9.3689 4.6292 -3.1352 23 6 4.7562 4.8145 -1.2098 24 6 4.3011 3.5125 -1.2019 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9329 0.9287 -0.8908 33 1 3.9337 0.9286 0.8891 34 1 4.1219 3.0004 2.1323 35 1 4.9422 5.3188 2.1431 36 1 4.9145 9.7004 1.5446 37 1 6.7064 10.4881 0.0579 38 1 7.7635 8.9225 -1.5234 39 1 7.7923 8.2762 -4.2569 40 1 4.9303 5.3213 -2.1473 41 1 4.1190 2.9998 -2.1348 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241051845.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:55 Heat of formation + Delta-G solvation = 15.926870 kcal Electronic energy + Delta-G solvation = -20799.290808 eV Core-core repulsion = 17835.049070 eV Total energy + Delta-G solvation = -2964.241738 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.08741 -37.92614 -35.59027 -34.18825 -32.45518 -30.73782 -30.25419 -29.95012 -27.61844 -25.71369 -24.00658 -22.17774 -21.61909 -21.18309 -20.95796 -19.78111 -17.44151 -16.21110 -15.67179 -15.49151 -14.80696 -14.64338 -14.16516 -14.03281 -13.97517 -13.52526 -12.89967 -12.85424 -12.70717 -12.49753 -12.27070 -12.02189 -11.78400 -11.54115 -11.40324 -11.23833 -11.13155 -11.07965 -10.96016 -10.67516 -10.58072 -10.37759 -10.20624 -9.78358 -9.45608 -8.50520 -8.20523 -8.08949 -7.97695 -7.29154 -6.89967 -4.54820 1.84197 2.18680 2.62621 2.95342 2.97539 3.02876 3.14450 3.79304 4.45732 4.56232 4.85945 4.91185 5.08988 5.28610 5.36439 5.48791 5.57748 5.67396 5.70549 5.73387 5.74876 5.85511 5.87199 5.98131 6.09882 6.18575 6.20838 6.26897 6.32142 6.40193 6.46821 6.65531 6.74798 6.80934 6.86575 7.00501 7.02722 7.25643 7.28949 7.51585 7.65571 7.73452 7.85621 7.89492 8.35641 8.57492 8.64591 9.55031 9.97698 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016076 B = 0.004671 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.312693 B = 5993.494106 C = 7352.686961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.114 4.114 4 C -0.073 4.073 5 C -0.107 4.107 6 C -0.126 4.126 7 C -0.108 4.108 8 C 0.020 3.980 9 C 0.014 3.986 10 N -0.454 5.454 11 C -0.032 4.032 12 C -0.151 4.151 13 C -0.129 4.129 14 C 0.085 3.915 15 C -0.439 4.439 16 H 0.089 0.911 17 C 0.073 3.927 18 N -0.790 5.790 19 Si 0.910 3.090 20 H -0.266 1.266 21 H -0.275 1.275 22 H -0.258 1.258 23 C -0.092 4.092 24 C -0.126 4.126 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.109 0.891 35 H 0.115 0.885 36 H 0.121 0.879 37 H 0.099 0.901 38 H 0.127 0.873 39 H 0.284 0.716 40 H 0.132 0.868 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.085 -10.063 2.033 11.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.152 4.152 4 C -0.111 4.111 5 C -0.107 4.107 6 C -0.144 4.144 7 C -0.127 4.127 8 C 0.020 3.980 9 C -0.124 4.124 10 N -0.161 5.161 11 C -0.193 4.193 12 C -0.171 4.171 13 C -0.154 4.154 14 C 0.080 3.920 15 C -0.469 4.469 16 H 0.107 0.893 17 C -0.146 4.146 18 N -0.415 5.415 19 Si 0.734 3.266 20 H -0.191 1.191 21 H -0.199 1.199 22 H -0.182 1.182 23 C -0.111 4.111 24 C -0.145 4.145 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.081 0.919 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.127 0.873 35 H 0.133 0.867 36 H 0.138 0.862 37 H 0.117 0.883 38 H 0.145 0.855 39 H 0.095 0.905 40 H 0.150 0.850 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.692 -10.145 2.381 11.874 hybrid contribution 1.214 0.132 -1.149 1.677 sum -4.478 -10.013 1.232 11.037 Atomic orbital electron populations 1.21779 0.96139 1.01219 1.01883 1.21558 0.95649 0.97280 1.01762 1.21615 0.95006 0.96090 1.02479 1.20510 0.95093 0.93437 1.02014 1.19704 1.01891 0.95762 0.93372 1.20745 1.01922 0.95038 0.96731 1.21210 0.99781 0.93962 0.97763 1.18441 0.95378 0.91863 0.92365 1.19569 0.98939 0.92283 1.01657 1.67036 1.26613 1.02425 1.20072 1.21669 1.01422 0.92588 1.03628 1.21440 0.98763 0.98942 0.97955 1.21435 1.01014 0.94097 0.98897 1.18352 0.89606 0.93089 0.90905 1.19619 1.31171 0.95841 1.00237 0.89307 1.26006 0.94550 0.95686 0.98314 1.69745 1.34495 1.17323 1.19900 0.86249 0.79940 0.80690 0.79723 1.19088 1.19948 1.18171 1.21447 0.96892 0.94008 0.98715 1.20823 1.01690 0.95176 0.96772 0.92793 0.92762 0.93081 0.92183 0.92219 0.91925 0.91874 0.91648 0.91737 0.87273 0.86679 0.86177 0.88317 0.85486 0.90450 0.84966 0.87065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.16 0.37 -0.96 16 2 C -0.12 -1.18 5.93 -26.73 -0.16 -1.33 16 3 C -0.11 -1.30 5.20 -26.73 -0.14 -1.44 16 4 C -0.07 -0.92 5.34 -27.88 -0.15 -1.07 16 5 C -0.11 -1.74 5.14 -104.50 -0.54 -2.27 16 6 C -0.13 -2.16 9.68 -39.64 -0.38 -2.54 16 7 C -0.11 -2.18 9.67 -39.16 -0.38 -2.56 16 8 C 0.02 0.46 5.25 -104.90 -0.55 -0.09 16 9 C 0.01 0.34 6.43 -82.23 -0.53 -0.19 16 10 N -0.45 -11.30 10.15 -9.17 -0.09 -11.39 16 11 C -0.03 -0.75 11.16 -17.36 -0.19 -0.94 16 12 C -0.15 -3.46 10.03 -39.84 -0.40 -3.86 16 13 C -0.13 -3.23 8.72 -38.98 -0.34 -3.57 16 14 C 0.09 2.20 5.54 -106.41 -0.59 1.61 16 15 C -0.44 -10.95 6.74 -37.89 -0.26 -11.20 16 16 H 0.09 2.18 6.46 -52.49 -0.34 1.84 16 17 C 0.07 1.72 5.26 -17.31 -0.09 1.63 16 18 N -0.79 -19.19 10.91 55.55 0.61 -18.58 16 19 Si 0.91 17.76 29.58 -169.99 -5.03 12.73 16 20 H -0.27 -5.11 7.11 56.52 0.40 -4.71 16 21 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 22 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 23 C -0.09 -1.92 7.84 -39.16 -0.31 -2.23 16 24 C -0.13 -2.24 9.68 -39.64 -0.38 -2.62 16 25 H 0.05 0.46 8.14 -51.92 -0.42 0.04 16 26 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 27 H 0.05 0.39 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 31 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 32 H 0.06 0.77 8.08 -51.93 -0.42 0.35 16 33 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 34 H 0.11 1.58 8.06 -52.49 -0.42 1.16 16 35 H 0.12 2.29 8.06 -52.48 -0.42 1.87 16 36 H 0.12 2.41 8.06 -52.48 -0.42 1.98 16 37 H 0.10 1.95 8.06 -52.48 -0.42 1.53 16 38 H 0.13 3.22 6.33 -52.49 -0.33 2.89 16 39 H 0.28 6.28 8.29 -40.82 -0.34 5.94 16 40 H 0.13 2.93 6.76 -52.49 -0.35 2.58 16 41 H 0.11 1.71 8.06 -52.48 -0.42 1.29 16 LS Contribution 340.78 15.07 5.14 5.14 Total: -1.00 -26.77 340.78 -10.47 -37.24 By element: Atomic # 1 Polarization: 14.57 SS G_CDS: -6.07 Total: 8.50 kcal Atomic # 6 Polarization: -28.61 SS G_CDS: -5.02 Total: -33.63 kcal Atomic # 7 Polarization: -30.49 SS G_CDS: 0.51 Total: -29.98 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.03 Total: 12.73 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -26.77 -10.47 -37.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241051845.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.172 kcal (2) G-P(sol) polarization free energy of solvation -26.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.471 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.245 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds