Wall clock time and date at job start Tue Mar 31 2020 05:15:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47187 * 2 1 4 4 C 1.52999 * 109.46858 * 180.02562 * 3 2 1 5 5 C 1.50702 * 109.46882 * 179.97438 * 4 3 2 6 6 C 1.38411 * 119.84143 * 89.99857 * 5 4 3 7 7 C 1.37916 * 120.14658 * 179.97438 * 6 5 4 8 8 C 1.39674 * 119.84763 * 0.02562 * 7 6 5 9 9 C 1.47828 * 120.14877 * 179.97438 * 8 7 6 10 10 N 1.32578 * 119.99255 * 316.14164 * 9 8 7 11 11 C 1.31738 * 121.71850 * 179.97438 * 10 9 8 12 12 C 1.38866 * 121.50881 * 0.02562 * 11 10 9 13 13 C 1.36875 * 119.79879 * 359.97438 * 12 11 10 14 14 C 1.41131 * 118.39682 * 0.27535 * 13 12 11 15 15 C 1.40882 * 120.72137 * 179.71959 * 14 13 12 16 16 H 1.08001 * 120.00129 * 151.61536 * 15 14 13 17 17 C 1.40081 * 120.00079 * 331.61347 * 15 14 13 18 18 N 1.30777 * 119.99878 * 348.29740 * 17 15 14 19 19 Si 1.86800 * 119.99865 * 168.29059 * 17 15 14 20 20 H 1.48502 * 109.46645 * 90.00494 * 19 17 15 21 21 H 1.48505 * 109.46820 * 210.00217 * 19 17 15 22 22 H 1.48498 * 109.47261 * 330.00660 * 19 17 15 23 23 C 1.39669 * 119.70331 * 0.25232 * 8 7 6 24 24 C 1.37922 * 119.83884 * 359.48993 * 23 8 7 25 25 H 1.09007 * 109.47030 * 300.00421 * 1 2 3 26 26 H 1.08996 * 109.47420 * 60.00326 * 1 2 3 27 27 H 1.09006 * 109.47455 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46995 * 239.99908 * 2 1 3 29 29 H 1.09001 * 109.46984 * 119.99724 * 2 1 3 30 30 H 1.08996 * 109.47147 * 59.99529 * 3 2 1 31 31 H 1.09001 * 109.46933 * 299.99755 * 3 2 1 32 32 H 1.08999 * 109.47270 * 59.99941 * 4 3 2 33 33 H 1.08996 * 109.47474 * 299.99505 * 4 3 2 34 34 H 1.07995 * 119.92583 * 0.02562 * 6 5 4 35 35 H 1.08004 * 120.07528 * 180.02562 * 7 6 5 36 36 H 1.08008 * 119.24276 * 180.02562 * 11 10 9 37 37 H 1.08003 * 120.09616 * 179.97438 * 12 11 10 38 38 H 1.08001 * 120.80390 * 179.97438 * 13 12 11 39 39 H 0.96994 * 119.99509 * 179.97438 * 18 17 15 40 40 H 1.07992 * 120.08190 * 179.72339 * 23 8 7 41 41 H 1.08003 * 119.92483 * 180.25153 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0723 2.8633 -0.0013 6 6 4.3024 3.5130 1.1990 7 6 4.7626 4.8130 1.2058 8 6 4.9960 5.4741 -0.0023 9 6 5.4888 6.8679 -0.0028 10 7 4.9600 7.7581 0.8252 11 6 5.3733 9.0086 0.8537 12 6 6.3855 9.4577 0.0157 13 6 6.9752 8.5905 -0.8640 14 6 6.5239 7.2537 -0.8930 15 6 7.0922 6.3213 -1.7832 16 1 7.1092 5.2720 -1.5281 17 6 7.6353 6.7552 -2.9994 18 7 7.4160 7.9757 -3.4150 19 14 8.6727 5.5906 -4.0274 20 1 7.7969 4.8475 -4.9687 21 1 9.6770 6.3695 -4.7957 22 1 9.3689 4.6292 -3.1352 23 6 4.7562 4.8145 -1.2098 24 6 4.3011 3.5125 -1.2019 25 1 -0.3633 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.8933 -0.5138 0.8900 30 1 1.6766 1.9564 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 3.9329 0.9287 -0.8908 33 1 3.9337 0.9286 0.8891 34 1 4.1219 3.0004 2.1323 35 1 4.9422 5.3188 2.1431 36 1 4.9145 9.7004 1.5446 37 1 6.7064 10.4881 0.0579 38 1 7.7635 8.9225 -1.5234 39 1 7.7923 8.2762 -4.2569 40 1 4.9303 5.3213 -2.1473 41 1 4.1190 2.9998 -2.1348 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241051845.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:55 Heat of formation + Delta-G solvation = 5.378866 kcal Electronic energy + Delta-G solvation = -20799.748203 eV Core-core repulsion = 17835.049070 eV Total energy + Delta-G solvation = -2964.699134 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.72817 -39.52168 -36.58092 -36.00735 -33.79369 -32.56039 -31.72635 -31.44065 -28.95897 -27.47768 -25.22438 -23.81304 -23.04593 -22.86707 -21.88778 -21.28198 -19.28987 -17.87068 -17.33395 -16.62059 -16.26408 -16.16507 -15.75409 -15.47194 -15.12462 -14.82983 -14.34552 -14.25974 -14.16633 -13.84174 -13.61473 -13.36790 -13.24161 -13.21371 -13.06531 -12.77725 -12.36065 -12.18812 -12.14049 -11.96072 -11.71380 -11.68297 -11.38793 -11.31621 -11.19478 -10.29763 -9.96435 -9.80339 -9.62682 -8.98176 -8.67090 -6.42541 0.24398 0.68654 0.87954 1.18525 1.36711 1.47196 1.51827 2.15911 2.70769 3.00180 3.67153 3.86907 3.94167 4.04749 4.23297 4.23585 4.31647 4.43928 4.46045 4.51645 4.61819 4.72999 4.77355 4.86284 4.87702 4.90572 5.00784 5.04131 5.09023 5.15215 5.19438 5.23090 5.33730 5.35961 5.37222 5.45714 5.56905 5.65440 5.78343 5.84864 5.89095 6.02055 6.05968 6.28331 6.49649 6.71923 6.78630 7.68143 8.22265 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016076 B = 0.004671 C = 0.003807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1741.312693 B = 5993.494106 C = 7352.686961 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.121 4.121 3 C -0.112 4.112 4 C -0.070 4.070 5 C -0.093 4.093 6 C -0.121 4.121 7 C -0.118 4.118 8 C -0.016 4.016 9 C -0.001 4.001 10 N -0.472 5.472 11 C -0.041 4.041 12 C -0.150 4.150 13 C -0.153 4.153 14 C 0.055 3.945 15 C -0.457 4.457 16 H 0.083 0.917 17 C 0.038 3.962 18 N -0.819 5.819 19 Si 0.978 3.022 20 H -0.258 1.258 21 H -0.264 1.264 22 H -0.259 1.259 23 C -0.106 4.106 24 C -0.126 4.126 25 H 0.051 0.949 26 H 0.050 0.950 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.068 0.932 30 H 0.057 0.943 31 H 0.053 0.947 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.142 0.858 35 H 0.109 0.891 36 H 0.152 0.848 37 H 0.131 0.869 38 H 0.118 0.882 39 H 0.293 0.707 40 H 0.108 0.892 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.563 -12.488 2.127 13.835 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.149 4.149 4 C -0.107 4.107 5 C -0.093 4.093 6 C -0.139 4.139 7 C -0.137 4.137 8 C -0.017 4.017 9 C -0.139 4.139 10 N -0.180 5.180 11 C -0.201 4.201 12 C -0.170 4.170 13 C -0.179 4.179 14 C 0.050 3.950 15 C -0.486 4.486 16 H 0.101 0.899 17 C -0.179 4.179 18 N -0.444 5.444 19 Si 0.799 3.201 20 H -0.182 1.182 21 H -0.188 1.188 22 H -0.183 1.183 23 C -0.125 4.125 24 C -0.143 4.143 25 H 0.071 0.929 26 H 0.069 0.931 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.087 0.913 30 H 0.075 0.925 31 H 0.072 0.928 32 H 0.097 0.903 33 H 0.101 0.899 34 H 0.160 0.840 35 H 0.127 0.873 36 H 0.170 0.830 37 H 0.148 0.852 38 H 0.136 0.864 39 H 0.103 0.897 40 H 0.126 0.874 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -6.183 -12.555 2.486 14.214 hybrid contribution 1.267 0.871 -1.113 1.898 sum -4.915 -11.685 1.373 12.751 Atomic orbital electron populations 1.21790 0.95767 1.01948 1.01658 1.21524 0.95968 0.95797 1.02546 1.21576 0.94047 0.97484 1.01808 1.20586 0.95747 0.90728 1.03624 1.20154 0.99412 0.97438 0.92279 1.21086 1.00364 0.93779 0.98625 1.21257 1.00504 0.95354 0.96607 1.18537 0.97923 0.91338 0.93911 1.20044 0.98729 0.93746 1.01350 1.67111 1.27145 1.03185 1.20587 1.22254 1.01312 0.92661 1.03883 1.21740 0.98207 1.00156 0.96922 1.21498 1.01731 0.94666 1.00000 1.18725 0.90411 0.93890 0.91938 1.19696 1.32341 0.95478 1.01090 0.89860 1.26788 0.95024 0.97201 0.98852 1.69787 1.35111 1.18833 1.20662 0.85235 0.78330 0.78551 0.78019 1.18242 1.18848 1.18275 1.21318 0.98480 0.95449 0.97267 1.21096 1.00649 0.93889 0.98714 0.92950 0.93130 0.91906 0.91535 0.91296 0.92465 0.92808 0.90318 0.89924 0.83998 0.87291 0.83040 0.85159 0.86415 0.89652 0.87354 0.84618 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.27 9.91 71.98 0.71 -1.56 16 2 C -0.12 -1.87 5.93 30.59 0.18 -1.69 16 3 C -0.11 -2.21 5.20 30.59 0.16 -2.05 16 4 C -0.07 -1.49 5.34 29.85 0.16 -1.33 16 5 C -0.09 -2.78 5.14 -19.78 -0.10 -2.89 16 6 C -0.12 -3.90 9.68 22.23 0.22 -3.69 16 7 C -0.12 -4.79 9.67 22.54 0.22 -4.57 16 8 C -0.02 -0.76 5.25 -20.05 -0.11 -0.86 16 9 C 0.00 -0.03 6.43 42.47 0.27 0.24 16 10 N -0.47 -24.14 10.15 -182.91 -1.86 -26.00 16 11 C -0.04 -1.91 11.16 84.86 0.95 -0.96 16 12 C -0.15 -6.98 10.03 22.10 0.22 -6.76 16 13 C -0.15 -7.99 8.72 22.66 0.20 -7.79 16 14 C 0.05 2.97 5.54 -21.02 -0.12 2.86 16 15 C -0.46 -23.74 6.74 23.36 0.16 -23.58 16 16 H 0.08 4.28 6.46 -2.91 -0.02 4.26 16 17 C 0.04 1.80 5.26 85.30 0.45 2.25 16 18 N -0.82 -40.85 10.91 21.85 0.24 -40.61 16 19 Si 0.98 36.60 29.58 68.60 2.03 38.63 16 20 H -0.26 -9.26 7.11 99.48 0.71 -8.55 16 21 H -0.26 -9.36 7.11 99.48 0.71 -8.65 16 22 H -0.26 -9.64 7.11 99.48 0.71 -8.93 16 23 C -0.11 -4.57 7.84 22.54 0.18 -4.40 16 24 C -0.13 -4.32 9.68 22.23 0.22 -4.10 16 25 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 26 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.07 0.96 8.14 -2.39 -0.02 0.94 16 30 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 1.53 8.08 -2.39 -0.02 1.51 16 33 H 0.08 1.53 8.08 -2.39 -0.02 1.51 16 34 H 0.14 3.63 8.06 -2.91 -0.02 3.61 16 35 H 0.11 4.43 8.06 -2.91 -0.02 4.41 16 36 H 0.15 5.91 8.06 -2.91 -0.02 5.88 16 37 H 0.13 5.06 8.06 -2.91 -0.02 5.04 16 38 H 0.12 6.24 6.33 -2.91 -0.02 6.22 16 39 H 0.29 13.13 8.29 -92.71 -0.77 12.36 16 40 H 0.11 5.09 6.76 -2.91 -0.02 5.07 16 41 H 0.14 3.91 8.06 -2.91 -0.02 3.89 16 Total: -1.00 -60.13 340.78 5.37 -54.75 By element: Atomic # 1 Polarization: 33.10 SS G_CDS: 1.00 Total: 34.11 kcal Atomic # 6 Polarization: -64.83 SS G_CDS: 3.96 Total: -60.87 kcal Atomic # 7 Polarization: -65.00 SS G_CDS: -1.62 Total: -66.61 kcal Atomic # 14 Polarization: 36.60 SS G_CDS: 2.03 Total: 38.63 kcal Total: -60.13 5.37 -54.75 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241051845.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.132 kcal (2) G-P(sol) polarization free energy of solvation -60.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.753 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.379 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds