Wall clock time and date at job start Tue Mar 31 2020 05:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47151 * 2 1 4 4 C 1.52997 * 109.47411 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.47173 * 179.97438 * 4 3 2 6 6 C 1.38408 * 119.84184 * 90.00870 * 5 4 3 7 7 C 1.37914 * 120.15074 * 180.02562 * 6 5 4 8 8 C 1.39680 * 119.84770 * 359.97438 * 7 6 5 9 9 C 1.47819 * 120.15604 * 180.02562 * 8 7 6 10 10 C 1.39684 * 120.64682 * 309.97477 * 9 8 7 11 11 C 1.38394 * 118.47319 * 180.02562 * 10 9 8 12 12 C 1.39054 * 119.72705 * 359.97438 * 11 10 9 13 13 N 1.31284 * 121.33873 * 0.02577 * 12 11 10 14 14 C 1.33693 * 121.63692 * 359.97438 * 13 12 11 15 15 C 1.40820 * 119.94040 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00273 * 179.97438 * 15 14 13 17 17 C 1.40151 * 119.99825 * 0.02562 * 15 14 13 18 18 N 1.30698 * 120.00211 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00193 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46989 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46977 * 119.99826 * 19 17 15 22 22 H 1.48501 * 109.47370 * 240.00208 * 19 17 15 23 23 C 1.39688 * 119.69584 * 0.27426 * 8 7 6 24 24 C 1.37919 * 119.84323 * 359.47227 * 23 8 7 25 25 H 1.08998 * 109.47107 * 299.99178 * 1 2 3 26 26 H 1.08995 * 109.47299 * 60.00095 * 1 2 3 27 27 H 1.09000 * 109.46649 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47185 * 240.00642 * 2 1 3 29 29 H 1.08995 * 109.47547 * 120.00397 * 2 1 3 30 30 H 1.09008 * 109.46552 * 60.00254 * 3 2 1 31 31 H 1.08995 * 109.47219 * 300.00597 * 3 2 1 32 32 H 1.09006 * 109.46536 * 60.00255 * 4 3 2 33 33 H 1.08995 * 109.47598 * 300.00587 * 4 3 2 34 34 H 1.07994 * 119.92817 * 359.96919 * 6 5 4 35 35 H 1.08001 * 120.07498 * 179.97438 * 7 6 5 36 36 H 1.07995 * 120.76107 * 0.04170 * 10 9 8 37 37 H 1.07996 * 120.13647 * 180.02562 * 11 10 9 38 38 H 1.08007 * 119.33144 * 180.29683 * 12 11 10 39 39 H 0.96997 * 120.00557 * 179.97438 * 18 17 15 40 40 H 1.08004 * 120.08032 * 179.72985 * 23 8 7 41 41 H 1.08004 * 119.92444 * 180.23319 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0723 2.8634 0.0000 6 6 4.3015 3.5134 1.2003 7 6 4.7606 4.8138 1.2071 8 6 4.9949 5.4747 -0.0009 9 6 5.4875 6.8684 -0.0015 10 6 4.8564 7.8471 0.7698 11 6 5.3549 9.1376 0.7351 12 6 6.4603 9.4288 -0.0567 13 7 7.0465 8.5018 -0.7782 14 6 6.6102 7.2381 -0.7852 15 6 7.2659 6.2725 -1.5730 16 1 6.9145 5.2513 -1.5791 17 6 8.3752 6.6365 -2.3484 18 7 8.8008 7.8722 -2.3407 19 14 9.2455 5.3555 -3.3929 20 1 8.5727 4.0419 -3.2277 21 1 9.1930 5.7620 -4.8202 22 1 10.6621 5.2443 -2.9616 23 6 4.7564 4.8144 -1.2085 24 6 4.3023 3.5122 -1.2007 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6766 1.9564 -0.8899 32 1 3.9336 0.9286 -0.8892 33 1 3.9330 0.9288 0.8907 34 1 4.1195 3.0014 2.1336 35 1 4.9387 5.3200 2.1444 36 1 3.9992 7.6022 1.3794 37 1 4.8879 9.9152 1.3213 38 1 6.8470 10.4371 -0.0753 39 1 9.5687 8.1241 -2.8770 40 1 4.9312 5.3210 -2.1462 41 1 4.1210 2.9991 -2.1336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241052926.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:29 Heat of formation + Delta-G solvation = 25.933005 kcal Electronic energy + Delta-G solvation = -20764.184300 eV Core-core repulsion = 17800.376460 eV Total energy + Delta-G solvation = -2963.807839 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.08046 -37.82145 -35.65567 -33.73140 -32.66284 -30.61780 -30.29887 -29.91509 -27.50512 -25.76616 -23.97849 -22.24482 -21.63690 -21.13220 -20.96718 -19.78435 -17.54054 -15.99098 -15.69064 -15.50545 -14.74432 -14.52655 -14.38944 -14.07311 -13.97227 -13.38156 -12.94369 -12.82110 -12.72649 -12.46675 -12.29158 -12.09067 -11.78996 -11.38445 -11.31236 -11.25593 -11.14287 -11.03597 -10.88427 -10.66442 -10.59903 -10.29860 -10.21859 -9.78855 -9.46345 -8.50547 -8.24613 -7.97922 -7.63259 -7.23707 -6.49137 -4.56956 1.85098 2.09610 2.71807 3.00618 3.05282 3.10447 3.17710 3.88861 4.43814 4.68398 4.81499 4.86942 5.04935 5.23906 5.32774 5.55324 5.57756 5.68827 5.69250 5.75979 5.79711 5.83564 5.88531 5.94482 6.05948 6.06945 6.14189 6.16535 6.22894 6.35348 6.38393 6.49878 6.69811 6.75071 6.83919 6.97228 7.09986 7.19221 7.29742 7.36218 7.53894 7.70730 7.78060 7.99636 8.19879 8.56974 8.86427 10.02728 10.21370 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016833 B = 0.004550 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.969097 B = 6152.940848 C = 7508.334349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.114 4.114 4 C -0.073 4.073 5 C -0.114 4.114 6 C -0.119 4.119 7 C -0.129 4.129 8 C 0.024 3.976 9 C -0.237 4.237 10 C -0.034 4.034 11 C -0.322 4.322 12 C 0.131 3.869 13 N -0.482 5.482 14 C 0.267 3.733 15 C -0.420 4.420 16 H 0.095 0.905 17 C 0.068 3.932 18 N -0.708 5.708 19 Si 0.903 3.097 20 H -0.257 1.257 21 H -0.271 1.271 22 H -0.272 1.272 23 C -0.107 4.107 24 C -0.120 4.120 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.061 0.939 31 H 0.062 0.938 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.109 0.891 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.095 0.905 38 H 0.119 0.881 39 H 0.274 0.726 40 H 0.126 0.874 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.707 -10.547 2.423 13.889 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.151 4.151 4 C -0.110 4.110 5 C -0.114 4.114 6 C -0.137 4.137 7 C -0.147 4.147 8 C 0.023 3.977 9 C -0.241 4.241 10 C -0.058 4.058 11 C -0.345 4.345 12 C -0.037 4.037 13 N -0.194 5.194 14 C 0.144 3.856 15 C -0.450 4.450 16 H 0.113 0.887 17 C -0.158 4.158 18 N -0.329 5.329 19 Si 0.726 3.274 20 H -0.180 1.180 21 H -0.197 1.197 22 H -0.197 1.197 23 C -0.125 4.125 24 C -0.138 4.138 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.080 0.920 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.127 0.873 35 H 0.130 0.870 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.136 0.864 39 H 0.085 0.915 40 H 0.144 0.856 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -7.792 -10.240 1.783 12.990 hybrid contribution -0.275 -0.529 0.172 0.620 sum -8.067 -10.769 1.955 13.596 Atomic orbital electron populations 1.21777 0.96125 1.01257 1.01851 1.21562 0.95653 0.97269 1.01806 1.21612 0.95030 0.96110 1.02380 1.20502 0.95050 0.93435 1.02047 1.19665 1.02592 0.95828 0.93327 1.20740 1.01256 0.94960 0.96732 1.21230 1.01460 0.94497 0.97555 1.18722 0.93696 0.93174 0.92065 1.19390 1.03648 0.92057 1.09046 1.20884 0.96669 0.92942 0.95302 1.21220 1.05154 0.96787 1.11331 1.22610 0.91430 0.98084 0.91594 1.68767 1.29309 1.00424 1.20882 1.18539 0.88029 0.89879 0.89159 1.19880 1.09093 0.96546 1.19485 0.88698 1.26161 0.97073 0.95808 0.96806 1.70126 1.17788 1.17158 1.27794 0.86324 0.79662 0.81698 0.79668 1.18043 1.19653 1.19664 1.21395 0.98328 0.94243 0.98519 1.20844 1.01020 0.95101 0.96795 0.92807 0.92773 0.93051 0.92157 0.92202 0.92000 0.91910 0.91655 0.91742 0.87318 0.86965 0.88603 0.88723 0.86392 0.91483 0.85619 0.87126 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 9.91 37.16 0.37 -0.89 16 2 C -0.13 -1.14 5.93 -26.73 -0.16 -1.29 16 3 C -0.11 -1.24 5.20 -26.73 -0.14 -1.38 16 4 C -0.07 -0.89 5.34 -27.89 -0.15 -1.04 16 5 C -0.11 -1.79 5.14 -104.50 -0.54 -2.33 16 6 C -0.12 -1.95 9.68 -39.64 -0.38 -2.33 16 7 C -0.13 -2.45 9.55 -39.16 -0.37 -2.82 16 8 C 0.02 0.52 5.02 -104.90 -0.53 -0.01 16 9 C -0.24 -5.72 5.53 -104.07 -0.58 -6.29 16 10 C -0.03 -0.76 9.67 -38.98 -0.38 -1.13 16 11 C -0.32 -7.18 10.10 -39.22 -0.40 -7.58 16 12 C 0.13 3.16 11.17 -17.48 -0.20 2.97 16 13 N -0.48 -13.18 7.85 -10.91 -0.09 -13.26 16 14 C 0.27 7.18 6.56 -84.71 -0.56 6.62 16 15 C -0.42 -10.98 7.97 -37.89 -0.30 -11.28 16 16 H 0.10 2.37 5.25 -52.49 -0.28 2.10 16 17 C 0.07 1.70 5.50 -17.32 -0.10 1.61 16 18 N -0.71 -18.54 11.46 55.56 0.64 -17.90 16 19 Si 0.90 18.41 29.56 -169.99 -5.02 13.39 16 20 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 21 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 22 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 23 C -0.11 -2.15 7.57 -39.16 -0.30 -2.45 16 24 C -0.12 -2.05 9.68 -39.64 -0.38 -2.44 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.02 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 28 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.70 8.14 -51.92 -0.42 0.27 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.06 0.76 8.08 -51.93 -0.42 0.34 16 33 H 0.06 0.73 8.08 -51.93 -0.42 0.31 16 34 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 35 H 0.11 2.03 8.05 -52.49 -0.42 1.60 16 36 H 0.10 1.91 8.06 -52.49 -0.42 1.48 16 37 H 0.09 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.12 2.51 8.06 -52.48 -0.42 2.09 16 39 H 0.27 6.47 8.29 -40.82 -0.34 6.13 16 40 H 0.13 2.63 7.26 -52.48 -0.38 2.25 16 41 H 0.11 1.65 8.06 -52.48 -0.42 1.23 16 LS Contribution 342.02 15.07 5.15 5.15 Total: -1.00 -28.24 342.02 -10.52 -38.77 By element: Atomic # 1 Polarization: 12.06 SS G_CDS: -6.13 Total: 5.93 kcal Atomic # 6 Polarization: -27.00 SS G_CDS: -5.08 Total: -32.07 kcal Atomic # 7 Polarization: -31.72 SS G_CDS: 0.55 Total: -31.17 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.02 Total: 13.39 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.24 -10.52 -38.77 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241052926.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.700 kcal (2) G-P(sol) polarization free energy of solvation -28.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.456 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.767 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds