Wall clock time and date at job start Tue Mar 31 2020 05:16:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53000 * 109.47151 * 2 1 4 4 C 1.52997 * 109.47411 * 179.97438 * 3 2 1 5 5 C 1.50697 * 109.47173 * 179.97438 * 4 3 2 6 6 C 1.38408 * 119.84184 * 90.00870 * 5 4 3 7 7 C 1.37914 * 120.15074 * 180.02562 * 6 5 4 8 8 C 1.39680 * 119.84770 * 359.97438 * 7 6 5 9 9 C 1.47819 * 120.15604 * 180.02562 * 8 7 6 10 10 C 1.39684 * 120.64682 * 309.97477 * 9 8 7 11 11 C 1.38394 * 118.47319 * 180.02562 * 10 9 8 12 12 C 1.39054 * 119.72705 * 359.97438 * 11 10 9 13 13 N 1.31284 * 121.33873 * 0.02577 * 12 11 10 14 14 C 1.33693 * 121.63692 * 359.97438 * 13 12 11 15 15 C 1.40820 * 119.94040 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00273 * 179.97438 * 15 14 13 17 17 C 1.40151 * 119.99825 * 0.02562 * 15 14 13 18 18 N 1.30698 * 120.00211 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00193 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46989 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46977 * 119.99826 * 19 17 15 22 22 H 1.48501 * 109.47370 * 240.00208 * 19 17 15 23 23 C 1.39688 * 119.69584 * 0.27426 * 8 7 6 24 24 C 1.37919 * 119.84323 * 359.47227 * 23 8 7 25 25 H 1.08998 * 109.47107 * 299.99178 * 1 2 3 26 26 H 1.08995 * 109.47299 * 60.00095 * 1 2 3 27 27 H 1.09000 * 109.46649 * 179.97438 * 1 2 3 28 28 H 1.09008 * 109.47185 * 240.00642 * 2 1 3 29 29 H 1.08995 * 109.47547 * 120.00397 * 2 1 3 30 30 H 1.09008 * 109.46552 * 60.00254 * 3 2 1 31 31 H 1.08995 * 109.47219 * 300.00597 * 3 2 1 32 32 H 1.09006 * 109.46536 * 60.00255 * 4 3 2 33 33 H 1.08995 * 109.47598 * 300.00587 * 4 3 2 34 34 H 1.07994 * 119.92817 * 359.96919 * 6 5 4 35 35 H 1.08001 * 120.07498 * 179.97438 * 7 6 5 36 36 H 1.07995 * 120.76107 * 0.04170 * 10 9 8 37 37 H 1.07996 * 120.13647 * 180.02562 * 11 10 9 38 38 H 1.08007 * 119.33144 * 180.29683 * 12 11 10 39 39 H 0.96997 * 120.00557 * 179.97438 * 18 17 15 40 40 H 1.08004 * 120.08032 * 179.72985 * 23 8 7 41 41 H 1.08004 * 119.92444 * 180.23319 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 0.0006 5 6 4.0723 2.8634 0.0000 6 6 4.3015 3.5134 1.2003 7 6 4.7606 4.8138 1.2071 8 6 4.9949 5.4747 -0.0009 9 6 5.4875 6.8684 -0.0015 10 6 4.8564 7.8471 0.7698 11 6 5.3549 9.1376 0.7351 12 6 6.4603 9.4288 -0.0567 13 7 7.0465 8.5018 -0.7782 14 6 6.6102 7.2381 -0.7852 15 6 7.2659 6.2725 -1.5730 16 1 6.9145 5.2513 -1.5791 17 6 8.3752 6.6365 -2.3484 18 7 8.8008 7.8722 -2.3407 19 14 9.2455 5.3555 -3.3929 20 1 8.5727 4.0419 -3.2277 21 1 9.1930 5.7620 -4.8202 22 1 10.6621 5.2443 -2.9616 23 6 4.7564 4.8144 -1.2085 24 6 4.3023 3.5122 -1.2007 25 1 -0.3633 0.5137 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6766 1.9564 -0.8899 32 1 3.9336 0.9286 -0.8892 33 1 3.9330 0.9288 0.8907 34 1 4.1195 3.0014 2.1336 35 1 4.9387 5.3200 2.1444 36 1 3.9992 7.6022 1.3794 37 1 4.8879 9.9152 1.3213 38 1 6.8470 10.4371 -0.0753 39 1 9.5687 8.1241 -2.8770 40 1 4.9312 5.3210 -2.1462 41 1 4.1210 2.9991 -2.1336 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241052926.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:29 Heat of formation + Delta-G solvation = 14.365791 kcal Electronic energy + Delta-G solvation = -20764.685892 eV Core-core repulsion = 17800.376460 eV Total energy + Delta-G solvation = -2964.309432 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.64123 -39.44637 -36.61852 -35.57960 -34.00020 -32.33918 -31.69414 -31.42394 -28.84127 -27.53217 -25.16576 -23.81418 -23.02967 -22.79638 -21.88259 -21.24090 -19.40737 -17.63216 -17.24981 -16.56784 -16.17466 -16.09622 -16.00360 -15.45597 -14.88786 -14.83631 -14.36239 -14.21182 -14.08817 -13.79606 -13.63708 -13.49794 -13.23738 -12.91270 -12.88681 -12.72058 -12.35967 -12.15720 -12.13386 -11.94388 -11.71901 -11.68865 -11.32887 -11.31395 -11.24870 -10.24534 -9.76519 -9.66003 -9.51037 -8.88674 -8.32933 -6.48271 0.32883 0.66789 0.95684 1.25636 1.36899 1.50120 1.52041 2.19129 2.81458 3.02073 3.88744 3.90878 4.04426 4.14269 4.22197 4.23095 4.29864 4.33378 4.43989 4.50189 4.54077 4.70926 4.77590 4.83271 4.86494 4.89877 4.98099 5.03709 5.06816 5.17120 5.20517 5.29538 5.32262 5.36237 5.42868 5.45178 5.55952 5.63764 5.69994 5.84235 5.85136 6.04082 6.17821 6.27533 6.33344 6.70334 6.97080 8.15741 8.40122 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016833 B = 0.004550 C = 0.003728 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1662.969097 B = 6152.940848 C = 7508.334349 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.122 4.122 3 C -0.110 4.110 4 C -0.070 4.070 5 C -0.101 4.101 6 C -0.115 4.115 7 C -0.134 4.134 8 C -0.011 4.011 9 C -0.241 4.241 10 C -0.045 4.045 11 C -0.313 4.313 12 C 0.106 3.894 13 N -0.521 5.521 14 C 0.234 3.766 15 C -0.450 4.450 16 H 0.096 0.904 17 C 0.024 3.976 18 N -0.751 5.751 19 Si 0.977 3.023 20 H -0.253 1.253 21 H -0.263 1.263 22 H -0.265 1.265 23 C -0.122 4.122 24 C -0.122 4.122 25 H 0.052 0.948 26 H 0.050 0.950 27 H 0.061 0.939 28 H 0.064 0.936 29 H 0.068 0.932 30 H 0.058 0.942 31 H 0.054 0.946 32 H 0.075 0.925 33 H 0.080 0.920 34 H 0.142 0.858 35 H 0.116 0.884 36 H 0.123 0.877 37 H 0.128 0.872 38 H 0.138 0.862 39 H 0.280 0.720 40 H 0.104 0.896 41 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.946 -13.223 3.181 16.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.159 4.159 3 C -0.148 4.148 4 C -0.107 4.107 5 C -0.101 4.101 6 C -0.133 4.133 7 C -0.152 4.152 8 C -0.011 4.011 9 C -0.246 4.246 10 C -0.070 4.070 11 C -0.336 4.336 12 C -0.060 4.060 13 N -0.233 5.233 14 C 0.110 3.890 15 C -0.480 4.480 16 H 0.114 0.886 17 C -0.198 4.198 18 N -0.373 5.373 19 Si 0.797 3.203 20 H -0.177 1.177 21 H -0.188 1.188 22 H -0.190 1.190 23 C -0.140 4.140 24 C -0.139 4.139 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.080 0.920 28 H 0.083 0.917 29 H 0.086 0.914 30 H 0.077 0.923 31 H 0.073 0.927 32 H 0.094 0.906 33 H 0.099 0.901 34 H 0.159 0.841 35 H 0.135 0.865 36 H 0.141 0.859 37 H 0.146 0.854 38 H 0.155 0.845 39 H 0.090 0.910 40 H 0.122 0.878 41 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -9.053 -12.894 2.561 15.961 hybrid contribution -0.049 0.278 0.046 0.286 sum -9.102 -12.615 2.607 15.773 Atomic orbital electron populations 1.21785 0.95686 1.01942 1.01706 1.21532 0.96031 0.95913 1.02465 1.21565 0.93932 0.97399 1.01863 1.20575 0.95850 0.90904 1.03420 1.20115 1.00172 0.97393 0.92403 1.21096 0.99838 0.93922 0.98469 1.21340 1.01544 0.95670 0.96684 1.18745 0.96252 0.92539 0.93610 1.19756 1.02690 0.94081 1.08029 1.21253 0.97382 0.92783 0.95543 1.21571 1.04080 0.97632 1.10278 1.23048 0.92365 0.98622 0.91964 1.68693 1.30928 1.01252 1.22444 1.18998 0.89401 0.90204 0.90418 1.20108 1.10364 0.96685 1.20868 0.88565 1.27033 0.97334 0.97823 0.97616 1.70217 1.18712 1.19131 1.29190 0.85231 0.78320 0.78812 0.77957 1.17668 1.18759 1.18998 1.21307 0.99765 0.95612 0.97330 1.21100 1.00243 0.93948 0.98651 0.92849 0.93081 0.91993 0.91677 0.91376 0.92303 0.92744 0.90637 0.90096 0.84054 0.86546 0.85911 0.85443 0.84460 0.90967 0.87822 0.84919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.12 9.91 71.98 0.71 -1.41 16 2 C -0.12 -1.79 5.93 30.59 0.18 -1.61 16 3 C -0.11 -2.04 5.20 30.59 0.16 -1.88 16 4 C -0.07 -1.45 5.34 29.85 0.16 -1.29 16 5 C -0.10 -2.89 5.14 -19.79 -0.10 -3.00 16 6 C -0.12 -3.48 9.68 22.23 0.22 -3.26 16 7 C -0.13 -4.94 9.55 22.54 0.22 -4.73 16 8 C -0.01 -0.47 5.02 -20.04 -0.10 -0.57 16 9 C -0.24 -11.97 5.53 -19.51 -0.11 -12.08 16 10 C -0.05 -2.05 9.67 22.66 0.22 -1.83 16 11 C -0.31 -13.86 10.10 22.50 0.23 -13.63 16 12 C 0.11 5.24 11.17 84.97 0.95 6.19 16 13 N -0.52 -29.69 7.85 -188.43 -1.48 -31.17 16 14 C 0.23 13.13 6.56 40.38 0.26 13.39 16 15 C -0.45 -24.57 7.97 23.37 0.19 -24.39 16 16 H 0.10 5.02 5.25 -2.91 -0.02 5.01 16 17 C 0.02 1.25 5.50 85.33 0.47 1.72 16 18 N -0.75 -40.98 11.46 21.86 0.25 -40.73 16 19 Si 0.98 38.67 29.56 68.60 2.03 40.70 16 20 H -0.25 -9.72 7.11 99.48 0.71 -9.01 16 21 H -0.26 -9.93 7.11 99.48 0.71 -9.23 16 22 H -0.27 -10.12 7.11 99.48 0.71 -9.41 16 23 C -0.12 -4.99 7.57 22.54 0.17 -4.82 16 24 C -0.12 -4.01 9.68 22.23 0.22 -3.79 16 25 H 0.05 0.73 8.14 -2.39 -0.02 0.72 16 26 H 0.05 0.73 8.14 -2.39 -0.02 0.71 16 27 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 28 H 0.06 0.91 8.14 -2.38 -0.02 0.89 16 29 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 30 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 31 H 0.05 1.11 8.14 -2.39 -0.02 1.09 16 32 H 0.08 1.46 8.08 -2.38 -0.02 1.44 16 33 H 0.08 1.46 8.08 -2.39 -0.02 1.44 16 34 H 0.14 3.33 8.06 -2.91 -0.02 3.30 16 35 H 0.12 4.08 8.05 -2.91 -0.02 4.06 16 36 H 0.12 4.74 8.06 -2.91 -0.02 4.72 16 37 H 0.13 4.70 8.06 -2.91 -0.02 4.68 16 38 H 0.14 5.96 8.06 -2.91 -0.02 5.94 16 39 H 0.28 13.73 8.29 -92.71 -0.77 12.96 16 40 H 0.10 4.60 7.26 -2.91 -0.02 4.58 16 41 H 0.13 3.70 8.06 -2.91 -0.02 3.68 16 Total: -1.00 -63.76 342.02 5.83 -57.93 By element: Atomic # 1 Polarization: 29.26 SS G_CDS: 1.00 Total: 30.26 kcal Atomic # 6 Polarization: -61.03 SS G_CDS: 4.03 Total: -56.99 kcal Atomic # 7 Polarization: -70.67 SS G_CDS: -1.23 Total: -71.90 kcal Atomic # 14 Polarization: 38.67 SS G_CDS: 2.03 Total: 40.70 kcal Total: -63.76 5.83 -57.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241052926.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.296 kcal (2) G-P(sol) polarization free energy of solvation -63.765 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.931 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.366 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds