Wall clock time and date at job start Tue Mar 31 2020 05:16:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47044 * 2 1 4 4 C 1.52998 * 109.47171 * 179.97438 * 3 2 1 5 5 C 1.50696 * 109.47242 * 180.02562 * 4 3 2 6 6 C 1.38326 * 119.88085 * 89.99986 * 5 4 3 7 7 C 1.38009 * 120.12130 * 179.97438 * 6 5 4 8 8 C 1.39348 * 119.88258 * 0.02562 * 7 6 5 9 9 C 1.48383 * 120.12351 * 180.02562 * 8 7 6 10 10 C 1.40036 * 120.82218 * 0.02562 * 9 8 7 11 11 C 1.38511 * 119.42395 * 179.97438 * 10 9 8 12 12 N 1.31478 * 121.14406 * 0.02562 * 11 10 9 13 13 C 1.33647 * 121.79298 * 359.97438 * 12 11 10 14 14 C 1.41426 * 119.77696 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99912 * 187.07025 * 14 13 12 16 16 C 1.40033 * 119.99947 * 7.07167 * 14 13 12 17 17 N 1.30741 * 120.00144 * 182.56910 * 16 14 13 18 18 Si 1.86809 * 120.00169 * 2.56807 * 16 14 13 19 19 H 1.48499 * 109.47093 * 179.97438 * 18 16 14 20 20 H 1.48495 * 109.46992 * 300.00230 * 18 16 14 21 21 H 1.48506 * 109.46797 * 59.99784 * 18 16 14 22 22 C 1.39302 * 120.82129 * 180.25959 * 9 8 7 23 23 C 1.39339 * 119.75254 * 0.27717 * 8 7 6 24 24 C 1.38022 * 119.88015 * 359.40140 * 23 8 7 25 25 H 1.08999 * 109.47081 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47064 * 299.99747 * 1 2 3 27 27 H 1.08996 * 109.46955 * 60.00029 * 1 2 3 28 28 H 1.09003 * 109.46781 * 240.00306 * 2 1 3 29 29 H 1.09003 * 109.46680 * 120.00255 * 2 1 3 30 30 H 1.09008 * 109.46985 * 60.00034 * 3 2 1 31 31 H 1.09000 * 109.47151 * 300.00314 * 3 2 1 32 32 H 1.09003 * 109.46689 * 60.00284 * 4 3 2 33 33 H 1.09000 * 109.47368 * 300.00216 * 4 3 2 34 34 H 1.08001 * 119.93523 * 0.02562 * 6 5 4 35 35 H 1.07999 * 120.06212 * 180.02562 * 7 6 5 36 36 H 1.08005 * 120.28903 * 0.02562 * 10 9 8 37 37 H 1.07998 * 119.42664 * 179.97438 * 11 10 9 38 38 H 0.96999 * 119.99741 * 354.84870 * 17 16 14 39 39 H 1.08005 * 120.58299 * 0.02562 * 22 9 8 40 40 H 1.08005 * 120.06092 * 179.72486 * 23 8 7 41 41 H 1.07992 * 119.94464 * 180.31827 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0723 2.8633 0.0013 6 6 4.3015 3.5126 1.2009 7 6 4.7621 4.8136 1.2073 8 6 4.9957 5.4733 0.0023 9 6 5.4914 6.8719 0.0029 10 6 5.7316 7.5475 1.2058 11 6 6.1946 8.8524 1.1726 12 7 6.4121 9.4680 0.0313 13 6 6.1988 8.8683 -1.1439 14 6 6.4465 9.5709 -2.3461 15 1 6.1689 9.1340 -3.2939 16 6 7.0517 10.8331 -2.3074 17 7 7.2350 11.5044 -3.4142 18 14 7.5971 11.5579 -0.6743 19 1 8.2049 12.8932 -0.9037 20 1 6.4221 11.6958 0.2231 21 1 8.5985 10.6603 -0.0443 22 6 5.7247 7.5469 -1.1930 23 6 4.7571 4.8165 -1.2032 24 6 4.3029 3.5131 -1.1979 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8901 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8892 33 1 3.9330 0.9288 0.8908 34 1 4.1205 3.0003 2.1343 35 1 4.9411 5.3195 2.1445 36 1 5.5581 7.0550 2.1512 37 1 6.3795 9.3736 2.1002 38 1 7.0209 11.0984 -4.2688 39 1 5.5476 7.0617 -2.1416 40 1 4.9322 5.3246 -2.1400 41 1 4.1225 3.0014 -2.1316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241053028.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:55 Heat of formation + Delta-G solvation = 8.527931 kcal Electronic energy + Delta-G solvation = -20223.927376 eV Core-core repulsion = 17259.364796 eV Total energy + Delta-G solvation = -2964.562580 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.55301 -38.34053 -35.98968 -33.95849 -33.06756 -31.04428 -30.77369 -30.24232 -27.87181 -25.63236 -24.45554 -22.83989 -22.09104 -21.29255 -20.86724 -20.17427 -18.30435 -16.55991 -15.93145 -15.41043 -15.23575 -14.91865 -14.33963 -14.27041 -13.97715 -13.57083 -13.40574 -13.07276 -13.03954 -12.94518 -12.56247 -12.34995 -12.18381 -12.07568 -11.55242 -11.49286 -11.35285 -11.15921 -10.77473 -10.75974 -10.60292 -10.35114 -10.06923 -9.62316 -9.40036 -9.29376 -8.74756 -8.02724 -7.72328 -7.67630 -7.26527 -4.82877 1.18528 1.61487 2.51260 2.71696 3.61713 3.65913 4.02308 4.07239 4.44546 4.56086 4.65978 4.67260 4.84528 4.93745 5.03539 5.12027 5.19127 5.25640 5.47242 5.48430 5.49836 5.52148 5.56361 5.64759 5.68516 5.75067 5.78768 5.89142 6.01354 6.04853 6.12328 6.16509 6.31336 6.41049 6.46102 6.55942 6.74671 6.79054 6.95327 7.11315 7.24782 7.37711 7.43807 7.63842 8.02840 8.24086 8.58928 9.43210 9.97361 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.036431 B = 0.003066 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.401341 B = 9130.835743 C = 9604.158559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.125 4.125 3 C -0.115 4.115 4 C -0.077 4.077 5 C -0.094 4.094 6 C -0.120 4.120 7 C -0.107 4.107 8 C -0.030 4.030 9 C 0.014 3.986 10 C -0.305 4.305 11 C 0.152 3.848 12 N -0.574 5.574 13 C 0.249 3.751 14 C -0.472 4.472 15 H 0.081 0.919 16 C 0.042 3.958 17 N -0.803 5.803 18 Si 1.156 2.844 19 H -0.333 1.333 20 H -0.279 1.279 21 H -0.293 1.293 22 C -0.242 4.242 23 C -0.108 4.108 24 C -0.118 4.118 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.068 0.932 34 H 0.117 0.883 35 H 0.125 0.875 36 H 0.106 0.894 37 H 0.129 0.871 38 H 0.283 0.717 39 H 0.108 0.892 40 H 0.125 0.875 41 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.087 -18.449 6.507 21.169 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.163 4.163 3 C -0.152 4.152 4 C -0.114 4.114 5 C -0.094 4.094 6 C -0.138 4.138 7 C -0.126 4.126 8 C -0.030 4.030 9 C 0.008 3.992 10 C -0.328 4.328 11 C -0.009 4.009 12 N -0.293 5.293 13 C 0.126 3.874 14 C -0.503 4.503 15 H 0.099 0.901 16 C -0.179 4.179 17 N -0.424 5.424 18 Si 0.991 3.009 19 H -0.267 1.267 20 H -0.207 1.207 21 H -0.222 1.222 22 C -0.264 4.264 23 C -0.126 4.126 24 C -0.136 4.136 25 H 0.071 0.929 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.079 0.921 30 H 0.082 0.918 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.135 0.865 35 H 0.143 0.857 36 H 0.124 0.876 37 H 0.147 0.853 38 H 0.094 0.906 39 H 0.126 0.874 40 H 0.143 0.857 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -7.175 -16.289 6.984 19.120 hybrid contribution -1.061 -2.359 -0.951 2.756 sum -8.236 -18.648 6.034 21.260 Atomic orbital electron populations 1.21780 0.95955 1.01427 1.01928 1.21554 0.95831 0.96966 1.01903 1.21617 0.94567 0.96502 1.02557 1.20575 0.95457 0.92897 1.02517 1.19830 1.00301 0.96057 0.93257 1.20886 1.00826 0.94868 0.97224 1.21258 0.99015 0.94400 0.97881 1.19012 0.97628 0.93353 0.92977 1.18705 0.95679 0.90782 0.94023 1.21182 1.17600 0.97580 0.96397 1.22045 0.92176 0.91336 0.95334 1.66504 1.27527 1.36704 0.98587 1.18601 0.88320 0.89360 0.91091 1.20790 1.33612 1.02997 0.92922 0.90077 1.27863 0.90579 0.93468 1.05973 1.70656 1.33896 1.37869 0.99995 0.81793 0.76908 0.71688 0.70505 1.26656 1.20661 1.22163 1.21742 1.11790 0.96648 0.96194 1.21325 0.98729 0.94436 0.98087 1.20905 1.00659 0.94782 0.97296 0.92910 0.92741 0.92727 0.92082 0.92099 0.91838 0.91808 0.91287 0.91308 0.86467 0.85723 0.87553 0.85316 0.90610 0.87426 0.85673 0.86426 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.91 37.16 0.37 -0.69 16 2 C -0.12 -0.91 5.93 -26.73 -0.16 -1.07 16 3 C -0.11 -1.00 5.20 -26.74 -0.14 -1.14 16 4 C -0.08 -0.73 5.34 -27.89 -0.15 -0.88 16 5 C -0.09 -1.18 5.14 -104.56 -0.54 -1.72 16 6 C -0.12 -1.57 9.68 -39.63 -0.38 -1.95 16 7 C -0.11 -1.65 9.45 -39.25 -0.37 -2.02 16 8 C -0.03 -0.53 5.88 -104.90 -0.62 -1.15 16 9 C 0.01 0.29 5.90 -104.65 -0.62 -0.33 16 10 C -0.30 -6.22 9.52 -38.81 -0.37 -6.59 16 11 C 0.15 3.33 11.17 -17.60 -0.20 3.13 16 12 N -0.57 -14.62 4.54 -11.20 -0.05 -14.68 16 13 C 0.25 6.52 6.39 -85.02 -0.54 5.98 16 14 C -0.47 -12.88 9.58 -37.70 -0.36 -13.24 16 15 H 0.08 2.20 8.05 -52.49 -0.42 1.78 16 16 C 0.04 1.16 5.52 -17.34 -0.10 1.07 16 17 N -0.80 -21.95 13.65 55.55 0.76 -21.19 16 18 Si 1.16 28.61 25.56 -169.99 -4.34 24.27 16 19 H -0.33 -8.13 7.11 56.52 0.40 -7.73 16 20 H -0.28 -6.86 6.67 56.52 0.38 -6.48 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 22 C -0.24 -5.66 9.22 -38.34 -0.35 -6.02 16 23 C -0.11 -1.76 9.45 -39.25 -0.37 -2.13 16 24 C -0.12 -1.61 9.68 -39.63 -0.38 -2.00 16 25 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.38 8.14 -51.93 -0.42 -0.04 16 28 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 29 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 30 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 31 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 33 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 34 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 35 H 0.12 1.77 6.29 -52.49 -0.33 1.44 16 36 H 0.11 1.84 6.32 -52.48 -0.33 1.51 16 37 H 0.13 2.38 8.06 -52.49 -0.42 1.96 16 38 H 0.28 7.37 8.72 -40.82 -0.36 7.02 16 39 H 0.11 2.36 6.33 -52.48 -0.33 2.02 16 40 H 0.13 2.03 6.29 -52.48 -0.33 1.70 16 41 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 LS Contribution 336.93 15.07 5.08 5.08 Total: -1.00 -28.87 336.93 -9.83 -38.70 By element: Atomic # 1 Polarization: 4.56 SS G_CDS: -5.99 Total: -1.43 kcal Atomic # 6 Polarization: -25.47 SS G_CDS: -5.28 Total: -30.75 kcal Atomic # 7 Polarization: -36.57 SS G_CDS: 0.71 Total: -35.87 kcal Atomic # 14 Polarization: 28.61 SS G_CDS: -4.34 Total: 24.27 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.87 -9.83 -38.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241053028.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.229 kcal (2) G-P(sol) polarization free energy of solvation -28.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.829 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.701 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds