Wall clock time and date at job start Tue Mar 31 2020 05:16:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52994 * 109.47044 * 2 1 4 4 C 1.52998 * 109.47171 * 179.97438 * 3 2 1 5 5 C 1.50696 * 109.47242 * 180.02562 * 4 3 2 6 6 C 1.38326 * 119.88085 * 89.99986 * 5 4 3 7 7 C 1.38009 * 120.12130 * 179.97438 * 6 5 4 8 8 C 1.39348 * 119.88258 * 0.02562 * 7 6 5 9 9 C 1.48383 * 120.12351 * 180.02562 * 8 7 6 10 10 C 1.40036 * 120.82218 * 0.02562 * 9 8 7 11 11 C 1.38511 * 119.42395 * 179.97438 * 10 9 8 12 12 N 1.31478 * 121.14406 * 0.02562 * 11 10 9 13 13 C 1.33647 * 121.79298 * 359.97438 * 12 11 10 14 14 C 1.41426 * 119.77696 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99912 * 187.07025 * 14 13 12 16 16 C 1.40033 * 119.99947 * 7.07167 * 14 13 12 17 17 N 1.30741 * 120.00144 * 182.56910 * 16 14 13 18 18 Si 1.86809 * 120.00169 * 2.56807 * 16 14 13 19 19 H 1.48499 * 109.47093 * 179.97438 * 18 16 14 20 20 H 1.48495 * 109.46992 * 300.00230 * 18 16 14 21 21 H 1.48506 * 109.46797 * 59.99784 * 18 16 14 22 22 C 1.39302 * 120.82129 * 180.25959 * 9 8 7 23 23 C 1.39339 * 119.75254 * 0.27717 * 8 7 6 24 24 C 1.38022 * 119.88015 * 359.40140 * 23 8 7 25 25 H 1.08999 * 109.47081 * 179.97438 * 1 2 3 26 26 H 1.08995 * 109.47064 * 299.99747 * 1 2 3 27 27 H 1.08996 * 109.46955 * 60.00029 * 1 2 3 28 28 H 1.09003 * 109.46781 * 240.00306 * 2 1 3 29 29 H 1.09003 * 109.46680 * 120.00255 * 2 1 3 30 30 H 1.09008 * 109.46985 * 60.00034 * 3 2 1 31 31 H 1.09000 * 109.47151 * 300.00314 * 3 2 1 32 32 H 1.09003 * 109.46689 * 60.00284 * 4 3 2 33 33 H 1.09000 * 109.47368 * 300.00216 * 4 3 2 34 34 H 1.08001 * 119.93523 * 0.02562 * 6 5 4 35 35 H 1.07999 * 120.06212 * 180.02562 * 7 6 5 36 36 H 1.08005 * 120.28903 * 0.02562 * 10 9 8 37 37 H 1.07998 * 119.42664 * 179.97438 * 11 10 9 38 38 H 0.96999 * 119.99741 * 354.84870 * 17 16 14 39 39 H 1.08005 * 120.58299 * 0.02562 * 22 9 8 40 40 H 1.08005 * 120.06092 * 179.72486 * 23 8 7 41 41 H 1.07992 * 119.94464 * 180.31827 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 6 4.0723 2.8633 0.0013 6 6 4.3015 3.5126 1.2009 7 6 4.7621 4.8136 1.2073 8 6 4.9957 5.4733 0.0023 9 6 5.4914 6.8719 0.0029 10 6 5.7316 7.5475 1.2058 11 6 6.1946 8.8524 1.1726 12 7 6.4121 9.4680 0.0313 13 6 6.1988 8.8683 -1.1439 14 6 6.4465 9.5709 -2.3461 15 1 6.1689 9.1340 -3.2939 16 6 7.0517 10.8331 -2.3074 17 7 7.2350 11.5044 -3.4142 18 14 7.5971 11.5579 -0.6743 19 1 8.2049 12.8932 -0.9037 20 1 6.4221 11.6958 0.2231 21 1 8.5985 10.6603 -0.0443 22 6 5.7247 7.5469 -1.1930 23 6 4.7571 4.8165 -1.2032 24 6 4.3029 3.5131 -1.1979 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 1.8934 -0.5138 -0.8901 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8901 31 1 1.6767 1.9563 -0.8900 32 1 3.9337 0.9285 -0.8892 33 1 3.9330 0.9288 0.8908 34 1 4.1205 3.0003 2.1343 35 1 4.9411 5.3195 2.1445 36 1 5.5581 7.0550 2.1512 37 1 6.3795 9.3736 2.1002 38 1 7.0209 11.0984 -4.2688 39 1 5.5476 7.0617 -2.1416 40 1 4.9322 5.3246 -2.1400 41 1 4.1225 3.0014 -2.1316 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241053028.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:54 Heat of formation + Delta-G solvation = -3.967346 kcal Electronic energy + Delta-G solvation = -20224.469212 eV Core-core repulsion = 17259.364796 eV Total energy + Delta-G solvation = -2965.104416 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.95090 -39.85854 -36.82740 -35.79854 -34.38608 -32.55052 -31.95110 -31.73983 -28.93962 -27.50085 -25.49630 -24.21941 -23.35248 -22.44505 -21.96817 -21.52244 -20.16943 -18.05137 -17.17808 -16.75737 -16.48940 -16.31089 -15.62864 -15.49012 -15.13271 -14.95976 -14.73833 -14.61311 -14.32872 -14.06916 -13.94505 -13.72931 -13.66291 -13.18619 -12.72891 -12.64034 -12.47979 -12.13798 -12.02619 -11.94694 -11.70102 -11.56122 -11.52774 -11.35940 -11.32395 -10.84894 -9.91580 -9.87137 -9.66972 -9.26130 -9.06007 -6.85159 -0.16336 0.48687 0.66316 1.15013 1.60954 1.73390 2.06662 2.48195 2.60603 2.93450 3.59266 3.68024 3.83083 3.86470 3.95708 4.08656 4.12179 4.20520 4.34997 4.37537 4.49681 4.56103 4.57175 4.62449 4.78791 4.79869 4.85151 4.95964 4.99380 5.01648 5.14489 5.18618 5.20904 5.32421 5.33318 5.35712 5.39045 5.43333 5.49076 5.52384 5.69735 5.72246 5.93319 6.01110 6.08874 6.34470 6.63081 7.55507 7.93860 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.036431 B = 0.003066 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.401341 B = 9130.835743 C = 9604.158559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.122 4.122 3 C -0.112 4.112 4 C -0.075 4.075 5 C -0.080 4.080 6 C -0.118 4.118 7 C -0.105 4.105 8 C -0.069 4.069 9 C 0.021 3.979 10 C -0.283 4.283 11 C 0.133 3.867 12 N -0.596 5.596 13 C 0.236 3.764 14 C -0.513 4.513 15 H 0.062 0.938 16 C 0.014 3.986 17 N -0.831 5.831 18 Si 1.192 2.808 19 H -0.331 1.331 20 H -0.277 1.277 21 H -0.295 1.295 22 C -0.268 4.268 23 C -0.121 4.121 24 C -0.123 4.123 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.060 0.940 31 H 0.053 0.947 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.151 0.849 35 H 0.139 0.861 36 H 0.148 0.852 37 H 0.168 0.832 38 H 0.279 0.721 39 H 0.107 0.893 40 H 0.112 0.888 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.140 -21.804 9.719 25.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.159 4.159 3 C -0.150 4.150 4 C -0.112 4.112 5 C -0.080 4.080 6 C -0.136 4.136 7 C -0.123 4.123 8 C -0.069 4.069 9 C 0.015 3.985 10 C -0.305 4.305 11 C -0.025 4.025 12 N -0.315 5.315 13 C 0.112 3.888 14 C -0.545 4.545 15 H 0.080 0.920 16 C -0.202 4.202 17 N -0.454 5.454 18 Si 1.024 2.976 19 H -0.264 1.264 20 H -0.204 1.204 21 H -0.224 1.224 22 C -0.289 4.289 23 C -0.139 4.139 24 C -0.141 4.141 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.068 0.932 28 H 0.084 0.916 29 H 0.088 0.912 30 H 0.079 0.921 31 H 0.072 0.928 32 H 0.097 0.903 33 H 0.105 0.895 34 H 0.169 0.831 35 H 0.157 0.843 36 H 0.166 0.834 37 H 0.185 0.815 38 H 0.090 0.910 39 H 0.125 0.875 40 H 0.130 0.870 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -8.238 -19.657 10.205 23.631 hybrid contribution -0.893 -1.711 -1.742 2.600 sum -9.131 -21.368 8.463 24.730 Atomic orbital electron populations 1.21797 0.95895 1.01928 1.01676 1.21530 0.95879 0.95970 1.02568 1.21577 0.93985 0.97435 1.01963 1.20651 0.95753 0.90822 1.03978 1.20272 0.97771 0.97366 0.92586 1.21266 0.99501 0.94021 0.98820 1.21447 0.98405 0.95314 0.97177 1.18963 1.00979 0.92195 0.94773 1.19125 0.93610 0.92492 0.93300 1.21730 1.14029 0.96876 0.97832 1.22782 0.91766 0.92404 0.95583 1.66441 1.28118 1.37734 0.99254 1.18720 0.88555 0.90348 0.91154 1.20730 1.36681 1.04113 0.93003 0.92020 1.28606 0.90407 0.93798 1.07412 1.70675 1.36405 1.38272 1.00068 0.81323 0.76477 0.71166 0.68611 1.26445 1.20429 1.22389 1.21807 1.13296 0.96200 0.97647 1.21379 0.99446 0.95716 0.97345 1.21162 1.00076 0.93767 0.99049 0.92082 0.92839 0.93185 0.91644 0.91209 0.92133 0.92792 0.90266 0.89525 0.83149 0.84326 0.83418 0.81471 0.91022 0.87486 0.87026 0.84388 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.74 9.91 71.98 0.71 -1.03 16 2 C -0.12 -1.35 5.93 30.59 0.18 -1.17 16 3 C -0.11 -1.56 5.20 30.59 0.16 -1.40 16 4 C -0.07 -1.08 5.34 29.85 0.16 -0.92 16 5 C -0.08 -1.69 5.14 -19.82 -0.10 -1.79 16 6 C -0.12 -2.56 9.68 22.24 0.22 -2.34 16 7 C -0.11 -2.85 9.45 22.48 0.21 -2.64 16 8 C -0.07 -2.36 5.88 -20.04 -0.12 -2.48 16 9 C 0.02 0.86 5.90 -19.88 -0.12 0.74 16 10 C -0.28 -10.72 9.52 22.77 0.22 -10.51 16 11 C 0.13 5.55 11.17 84.81 0.95 6.50 16 12 N -0.60 -30.26 4.54 -189.36 -0.86 -31.12 16 13 C 0.24 12.77 6.39 40.20 0.26 13.03 16 14 C -0.51 -29.74 9.58 23.49 0.23 -29.51 16 15 H 0.06 3.65 8.05 -2.91 -0.02 3.62 16 16 C 0.01 0.78 5.52 85.29 0.47 1.26 16 17 N -0.83 -47.82 13.65 21.84 0.30 -47.52 16 18 Si 1.19 59.41 25.56 68.60 1.75 61.17 16 19 H -0.33 -16.09 7.11 99.48 0.71 -15.38 16 20 H -0.28 -13.48 6.67 99.48 0.66 -12.82 16 21 H -0.30 -14.60 7.11 99.48 0.71 -13.89 16 22 C -0.27 -12.91 9.22 23.07 0.21 -12.70 16 23 C -0.12 -3.85 9.45 22.48 0.21 -3.64 16 24 C -0.12 -3.06 9.68 22.24 0.22 -2.84 16 25 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 26 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 28 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 29 H 0.07 0.67 8.14 -2.39 -0.02 0.65 16 30 H 0.06 0.89 8.14 -2.38 -0.02 0.87 16 31 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 32 H 0.08 1.04 8.08 -2.39 -0.02 1.02 16 33 H 0.09 1.02 8.08 -2.39 -0.02 1.00 16 34 H 0.15 2.29 8.06 -2.91 -0.02 2.26 16 35 H 0.14 3.26 6.29 -2.91 -0.02 3.25 16 36 H 0.15 4.36 6.32 -2.91 -0.02 4.34 16 37 H 0.17 5.55 8.06 -2.91 -0.02 5.53 16 38 H 0.28 15.57 8.72 -92.71 -0.81 14.76 16 39 H 0.11 5.00 6.33 -2.91 -0.02 4.98 16 40 H 0.11 3.76 6.29 -2.91 -0.02 3.74 16 41 H 0.14 2.81 8.06 -2.91 -0.02 2.78 16 Total: -1.00 -65.16 336.93 6.18 -58.98 By element: Atomic # 1 Polarization: 9.02 SS G_CDS: 0.93 Total: 9.95 kcal Atomic # 6 Polarization: -55.52 SS G_CDS: 4.06 Total: -51.46 kcal Atomic # 7 Polarization: -78.08 SS G_CDS: -0.56 Total: -78.64 kcal Atomic # 14 Polarization: 59.41 SS G_CDS: 1.75 Total: 61.17 kcal Total: -65.16 6.18 -58.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241053028.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.016 kcal (2) G-P(sol) polarization free energy of solvation -65.163 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.180 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.983 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds