Wall clock time and date at job start Tue Mar 31 2020 05:15:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52996 * 109.46660 * 2 1 4 4 C 1.53007 * 109.46967 * 180.02562 * 3 2 1 5 5 C 1.50699 * 109.47289 * 180.02562 * 4 3 2 6 6 C 1.38328 * 119.87504 * 89.99659 * 5 4 3 7 7 C 1.38020 * 120.12290 * 179.97438 * 6 5 4 8 8 C 1.39349 * 119.87411 * 0.02562 * 7 6 5 9 9 C 1.48364 * 120.12311 * 180.02562 * 8 7 6 10 10 C 1.38898 * 119.61467 * 179.97438 * 9 8 7 11 11 C 1.40843 * 118.76231 * 179.97438 * 10 9 8 12 12 C 1.41531 * 120.98578 * 180.27071 * 11 10 9 13 13 H 1.08007 * 119.99619 * 155.87861 * 12 11 10 14 14 C 1.40045 * 120.00080 * 335.87859 * 12 11 10 15 15 N 1.30730 * 119.99805 * 343.26679 * 14 12 11 16 16 Si 1.86795 * 120.00013 * 163.27079 * 14 12 11 17 17 H 1.48510 * 109.46947 * 359.97438 * 16 14 12 18 18 H 1.48500 * 109.47507 * 119.99858 * 16 14 12 19 19 H 1.48502 * 109.47316 * 239.99981 * 16 14 12 20 20 C 1.41137 * 118.02849 * 0.02562 * 11 10 9 21 21 C 1.37746 * 119.06958 * 0.02562 * 20 11 10 22 22 N 1.31911 * 121.15738 * 359.97438 * 21 20 11 23 23 C 1.39358 * 119.75676 * 0.27539 * 8 7 6 24 24 C 1.38021 * 119.87430 * 359.44589 * 23 8 7 25 25 H 1.08997 * 109.47255 * 59.99909 * 1 2 3 26 26 H 1.09000 * 109.46570 * 179.97438 * 1 2 3 27 27 H 1.08996 * 109.46804 * 299.99396 * 1 2 3 28 28 H 1.09001 * 109.47224 * 240.00026 * 2 1 3 29 29 H 1.08997 * 109.47255 * 120.00091 * 2 1 3 30 30 H 1.08995 * 109.47468 * 60.00450 * 3 2 1 31 31 H 1.08997 * 109.47361 * 300.00026 * 3 2 1 32 32 H 1.09001 * 109.47256 * 59.99818 * 4 3 2 33 33 H 1.08997 * 109.46916 * 300.00071 * 4 3 2 34 34 H 1.08000 * 119.94212 * 359.95931 * 6 5 4 35 35 H 1.07993 * 120.06188 * 180.02562 * 7 6 5 36 36 H 1.07995 * 120.61649 * 0.02562 * 10 9 8 37 37 H 0.97001 * 119.99663 * 179.97438 * 15 14 12 38 38 H 1.07998 * 120.46789 * 179.97438 * 20 11 10 39 39 H 1.08010 * 119.42205 * 180.02562 * 21 20 11 40 40 H 1.08000 * 120.05860 * 179.72793 * 23 8 7 41 41 H 1.07994 * 119.93925 * 180.25256 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 6 4.0723 2.8634 0.0000 6 6 4.3024 3.5123 1.1997 7 6 4.7629 4.8134 1.2063 8 6 4.9956 5.4734 0.0013 9 6 5.4912 6.8718 0.0019 10 6 5.7200 7.5195 -1.2054 11 6 6.1899 8.8470 -1.1839 12 6 6.4334 9.5533 -2.3859 13 1 6.4100 10.6331 -2.3920 14 6 6.7047 8.8522 -3.5674 15 7 7.0558 7.5940 -3.5149 16 14 6.5652 9.7147 -5.2184 17 1 6.1539 11.1259 -5.0064 18 1 7.8799 9.6800 -5.9079 19 1 5.5500 9.0240 -6.0536 20 6 6.4057 9.4539 0.0720 21 6 6.1515 8.7315 1.2169 22 7 5.7118 7.4893 1.1566 23 6 4.7560 4.8169 -1.2044 24 6 4.3010 3.5139 -1.1991 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3632 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6766 1.9563 -0.8899 32 1 3.9330 0.9289 -0.8908 33 1 3.9337 0.9286 0.8891 34 1 4.1211 3.0001 2.1331 35 1 4.9426 5.3190 2.1435 36 1 5.5401 7.0147 -2.1430 37 1 7.2433 7.1082 -4.3333 38 1 6.7659 10.4701 0.1344 39 1 6.3143 9.1905 2.1810 40 1 4.9305 5.3253 -2.1411 41 1 4.1190 3.0027 -2.1328 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241053060.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:58 Heat of formation + Delta-G solvation = 14.977734 kcal Electronic energy + Delta-G solvation = -20409.461843 eV Core-core repulsion = 17445.178948 eV Total energy + Delta-G solvation = -2964.282896 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.21248 -37.97907 -35.72378 -34.18786 -32.56256 -30.82760 -30.38576 -29.81022 -27.40996 -26.00596 -24.15111 -22.61820 -21.70824 -21.08149 -20.98104 -19.88257 -17.64326 -15.97017 -15.67788 -15.33493 -14.95715 -14.72159 -14.29675 -14.11249 -13.82685 -13.52418 -13.04133 -12.94322 -12.84756 -12.77347 -12.56255 -12.29791 -11.89565 -11.53276 -11.35621 -11.27913 -11.21310 -11.13774 -10.96388 -10.68510 -10.47664 -10.37961 -10.28416 -9.85766 -9.49210 -8.67168 -8.40487 -8.08765 -8.00092 -7.12818 -6.88622 -4.64792 1.53640 1.96084 2.72841 2.88898 2.99445 3.04650 3.21062 3.81208 4.25994 4.67407 4.76063 4.82683 5.00055 5.16396 5.22432 5.30907 5.45604 5.54050 5.62920 5.64498 5.66000 5.71272 5.75019 5.88638 5.99240 6.02035 6.07032 6.09381 6.26831 6.29136 6.48030 6.52748 6.68348 6.79980 6.81108 6.97273 7.03628 7.07687 7.24364 7.33153 7.44967 7.55295 7.81143 8.05512 8.38908 8.66806 8.68903 9.53389 10.01059 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018797 B = 0.003739 C = 0.003251 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.254790 B = 7486.272663 C = 8611.061130 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.115 4.115 4 C -0.075 4.075 5 C -0.098 4.098 6 C -0.128 4.128 7 C -0.092 4.092 8 C -0.015 4.015 9 C 0.134 3.866 10 C -0.188 4.188 11 C 0.124 3.876 12 C -0.454 4.454 13 H 0.083 0.917 14 C 0.077 3.923 15 N -0.785 5.785 16 Si 0.911 3.089 17 H -0.259 1.259 18 H -0.273 1.273 19 H -0.270 1.270 20 C -0.273 4.273 21 C 0.103 3.897 22 N -0.565 5.565 23 C -0.104 4.104 24 C -0.123 4.123 25 H 0.053 0.947 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.114 0.886 35 H 0.130 0.870 36 H 0.132 0.868 37 H 0.284 0.716 38 H 0.101 0.899 39 H 0.122 0.878 40 H 0.129 0.871 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.220 -11.073 2.107 13.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.152 4.152 4 C -0.113 4.113 5 C -0.098 4.098 6 C -0.146 4.146 7 C -0.111 4.111 8 C -0.016 4.016 9 C 0.004 3.996 10 C -0.211 4.211 11 C 0.116 3.884 12 C -0.485 4.485 13 H 0.101 0.899 14 C -0.143 4.143 15 N -0.410 5.410 16 Si 0.735 3.265 17 H -0.182 1.182 18 H -0.198 1.198 19 H -0.195 1.195 20 C -0.296 4.296 21 C -0.053 4.053 22 N -0.280 5.280 23 C -0.123 4.123 24 C -0.141 4.141 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.132 0.868 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.095 0.905 38 H 0.120 0.880 39 H 0.140 0.860 40 H 0.147 0.853 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -7.306 -11.729 2.751 14.090 hybrid contribution 0.325 0.950 -1.604 1.893 sum -6.981 -10.779 1.147 12.893 Atomic orbital electron populations 1.21780 0.96064 1.01306 1.01903 1.21556 0.95723 0.97136 1.01833 1.21616 0.94796 0.96288 1.02530 1.20547 0.95265 0.93174 1.02277 1.19773 1.00835 0.95861 0.93358 1.20883 1.01631 0.95105 0.96956 1.21280 0.97561 0.93767 0.98489 1.18802 0.97334 0.92543 0.92873 1.19306 0.98434 0.92004 0.89839 1.22271 1.04495 0.97040 0.97261 1.17800 0.86672 0.91537 0.92403 1.19645 1.42015 0.94860 0.91983 0.89904 1.25986 0.91866 0.94785 1.01629 1.69769 1.30592 1.09862 1.30816 0.86203 0.78842 0.80790 0.80629 1.18246 1.19789 1.19483 1.21916 1.12800 1.01300 0.93602 1.21821 0.96285 0.90387 0.96784 1.67245 1.21197 1.11122 1.28429 1.21363 0.98304 0.94372 0.98234 1.20826 1.01350 0.94830 0.97060 0.92750 0.93010 0.92764 0.92134 0.92156 0.91862 0.91834 0.91457 0.91502 0.86825 0.85255 0.85034 0.90534 0.88038 0.86016 0.85317 0.86685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.22 9.91 37.16 0.37 -0.86 16 2 C -0.12 -1.07 5.93 -26.73 -0.16 -1.23 16 3 C -0.11 -1.19 5.20 -26.73 -0.14 -1.33 16 4 C -0.08 -0.86 5.34 -27.88 -0.15 -1.01 16 5 C -0.10 -1.46 5.14 -104.56 -0.54 -2.00 16 6 C -0.13 -2.03 9.68 -39.63 -0.38 -2.41 16 7 C -0.09 -1.76 9.57 -39.25 -0.38 -2.13 16 8 C -0.01 -0.31 5.88 -104.90 -0.62 -0.93 16 9 C 0.13 3.30 6.73 -83.04 -0.56 2.75 16 10 C -0.19 -4.88 8.14 -38.35 -0.31 -5.19 16 11 C 0.12 3.27 5.60 -106.56 -0.60 2.67 16 12 C -0.45 -11.69 9.12 -37.65 -0.34 -12.03 16 13 H 0.08 2.04 7.90 -52.48 -0.41 1.63 16 14 C 0.08 1.86 5.20 -17.34 -0.09 1.77 16 15 N -0.79 -19.46 10.93 55.55 0.61 -18.85 16 16 Si 0.91 17.91 29.59 -169.99 -5.03 12.88 16 17 H -0.26 -5.05 7.11 56.52 0.40 -4.65 16 18 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 19 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 20 C -0.27 -6.66 9.90 -38.66 -0.38 -7.04 16 21 C 0.10 2.39 11.15 -17.70 -0.20 2.19 16 22 N -0.57 -13.77 9.40 -9.94 -0.09 -13.86 16 23 C -0.10 -2.02 9.41 -39.24 -0.37 -2.39 16 24 C -0.12 -1.99 9.68 -39.63 -0.38 -2.38 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.06 0.50 8.14 -51.93 -0.42 0.07 16 29 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.69 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 33 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 34 H 0.11 1.51 8.06 -52.49 -0.42 1.08 16 35 H 0.13 2.47 7.53 -52.49 -0.40 2.08 16 36 H 0.13 3.39 4.33 -52.49 -0.23 3.17 16 37 H 0.28 6.33 8.29 -40.82 -0.34 5.99 16 38 H 0.10 2.27 8.06 -52.49 -0.42 1.84 16 39 H 0.12 2.39 8.06 -52.48 -0.42 1.97 16 40 H 0.13 2.58 6.18 -52.49 -0.32 2.26 16 41 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 LS Contribution 342.44 15.07 5.16 5.16 Total: -1.00 -27.58 342.44 -10.57 -38.15 By element: Atomic # 1 Polarization: 14.06 SS G_CDS: -5.99 Total: 8.07 kcal Atomic # 6 Polarization: -26.32 SS G_CDS: -5.23 Total: -31.54 kcal Atomic # 7 Polarization: -33.23 SS G_CDS: 0.51 Total: -32.71 kcal Atomic # 14 Polarization: 17.91 SS G_CDS: -5.03 Total: 12.88 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.58 -10.57 -38.15 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241053060.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.124 kcal (2) G-P(sol) polarization free energy of solvation -27.579 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.544 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.567 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.146 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.978 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds