Wall clock time and date at job start Tue Mar 31 2020 05:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47239 * 2 1 4 4 C 1.53008 * 109.47051 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.47102 * 180.02562 * 4 3 2 6 6 C 1.38394 * 119.85125 * 90.00055 * 5 4 3 7 7 C 1.37921 * 120.15182 * 180.25146 * 6 5 4 8 8 C 1.39672 * 119.84718 * 359.52101 * 7 6 5 9 9 C 1.47846 * 120.15034 * 180.22925 * 8 7 6 10 10 C 1.39305 * 120.77938 * 130.22680 * 9 8 7 11 11 N 1.31675 * 120.66156 * 179.97438 * 10 9 8 12 12 C 1.32209 * 122.50346 * 0.02562 * 11 10 9 13 13 C 1.36490 * 121.50681 * 0.02744 * 12 11 10 14 14 C 1.41123 * 119.10516 * 359.67289 * 13 12 11 15 15 C 1.40932 * 121.10919 * 180.30138 * 14 13 12 16 16 H 1.07995 * 119.99858 * 154.73140 * 15 14 13 17 17 C 1.40183 * 119.99936 * 334.73143 * 15 14 13 18 18 N 1.30676 * 119.99999 * 344.80403 * 17 15 14 19 19 Si 1.86802 * 119.99954 * 164.80603 * 17 15 14 20 20 H 1.48498 * 109.46886 * 94.73783 * 19 17 15 21 21 H 1.48495 * 109.47216 * 214.73714 * 19 17 15 22 22 H 1.48500 * 109.46873 * 334.74124 * 19 17 15 23 23 C 1.39672 * 119.69585 * 0.45457 * 8 7 6 24 24 C 1.37920 * 119.84799 * 359.77576 * 23 8 7 25 25 H 1.09003 * 109.46921 * 59.99700 * 1 2 3 26 26 H 1.08998 * 109.47657 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46919 * 300.00328 * 1 2 3 28 28 H 1.09001 * 109.46515 * 239.99976 * 2 1 3 29 29 H 1.09003 * 109.46921 * 120.00300 * 2 1 3 30 30 H 1.09007 * 109.47002 * 60.00603 * 3 2 1 31 31 H 1.08994 * 109.47786 * 300.00486 * 3 2 1 32 32 H 1.08994 * 109.46853 * 60.00319 * 4 3 2 33 33 H 1.09003 * 109.47087 * 300.00286 * 4 3 2 34 34 H 1.07995 * 119.92378 * 359.97438 * 6 5 4 35 35 H 1.07998 * 120.07590 * 179.74263 * 7 6 5 36 36 H 1.07998 * 119.66961 * 359.97438 * 10 9 8 37 37 H 1.07995 * 119.24813 * 179.97438 * 12 11 10 38 38 H 1.07999 * 120.45031 * 179.97438 * 13 12 11 39 39 H 0.96998 * 120.00266 * 179.97438 * 18 17 15 40 40 H 1.07999 * 120.07175 * 179.79155 * 23 8 7 41 41 H 1.08000 * 119.92493 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0725 2.8632 0.0013 6 6 4.3016 3.5123 1.2019 7 6 4.7564 4.8143 1.2097 8 6 4.9953 5.4744 0.0022 9 6 5.4878 6.8685 0.0028 10 6 6.5901 7.2354 -0.7657 11 7 7.0264 8.4778 -0.7639 12 6 6.4554 9.4302 -0.0464 13 6 5.3703 9.1762 0.7416 14 6 4.8440 7.8674 0.7839 15 6 3.7211 7.5595 1.5780 16 1 3.0885 6.7238 1.3177 17 6 3.4253 8.3380 2.7056 18 7 4.3266 9.1478 3.1952 19 14 1.7429 8.2179 3.5084 20 1 1.7970 7.2433 4.6275 21 1 1.3475 9.5504 4.0310 22 1 0.7468 7.7642 2.5047 23 6 4.7624 4.8131 -1.2058 24 6 4.3030 3.5127 -1.1990 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8901 31 1 1.6767 1.9564 -0.8899 32 1 3.9337 0.9285 -0.8891 33 1 3.9330 0.9286 0.8909 34 1 4.1196 2.9996 2.1348 35 1 4.9309 5.3210 2.1473 36 1 7.0919 6.4935 -1.3692 37 1 6.8573 10.4319 -0.0839 38 1 4.9175 9.9671 1.3210 39 1 4.1218 9.6868 3.9752 40 1 4.9418 5.3189 -2.1430 41 1 4.1220 3.0003 -2.1323 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241053225.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:04 Heat of formation + Delta-G solvation = 13.492729 kcal Electronic energy + Delta-G solvation = -20830.867756 eV Core-core repulsion = 17866.520466 eV Total energy + Delta-G solvation = -2964.347290 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.10223 -37.95683 -35.64804 -34.25250 -32.62829 -30.66500 -30.22336 -29.76185 -27.44868 -26.01735 -23.96330 -22.24683 -21.63763 -21.20381 -20.96410 -19.77286 -17.67153 -15.90551 -15.66889 -15.51566 -14.75074 -14.64952 -14.48255 -14.10021 -14.00963 -13.32253 -12.93150 -12.83032 -12.68918 -12.62978 -12.37138 -12.20881 -11.96418 -11.52454 -11.32536 -11.28428 -11.20907 -11.15437 -10.93620 -10.61889 -10.49808 -10.32974 -10.29353 -9.77605 -9.52140 -8.43549 -8.26473 -8.02992 -7.86487 -7.29729 -6.91762 -4.66126 1.83009 2.10731 2.69735 2.83948 2.96435 3.01585 3.18667 3.77592 4.43514 4.56074 4.83996 4.89419 5.07236 5.25052 5.33866 5.51387 5.58158 5.63413 5.70852 5.71674 5.74885 5.81864 5.84021 5.91856 5.97105 6.08362 6.15698 6.19549 6.29090 6.38055 6.40685 6.69612 6.74763 6.80521 6.85021 7.04810 7.07087 7.20409 7.32264 7.36820 7.53512 7.68409 7.83567 8.03096 8.37304 8.62504 8.66744 9.57301 9.94027 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014364 B = 0.005109 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.787171 B = 5479.529671 C = 7084.664212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.124 4.124 3 C -0.115 4.115 4 C -0.072 4.072 5 C -0.112 4.112 6 C -0.122 4.122 7 C -0.097 4.097 8 C 0.020 3.980 9 C -0.234 4.234 10 C 0.128 3.872 11 N -0.578 5.578 12 C 0.081 3.919 13 C -0.209 4.209 14 C 0.145 3.855 15 C -0.440 4.440 16 H 0.087 0.913 17 C 0.078 3.922 18 N -0.779 5.779 19 Si 0.908 3.092 20 H -0.267 1.267 21 H -0.273 1.273 22 H -0.258 1.258 23 C -0.128 4.128 24 C -0.121 4.121 25 H 0.053 0.947 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.110 0.890 35 H 0.126 0.874 36 H 0.121 0.879 37 H 0.118 0.882 38 H 0.126 0.874 39 H 0.285 0.715 40 H 0.113 0.887 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.299 -11.678 -2.030 12.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.153 4.153 4 C -0.110 4.110 5 C -0.112 4.112 6 C -0.140 4.140 7 C -0.115 4.115 8 C 0.020 3.980 9 C -0.240 4.240 10 C -0.031 4.031 11 N -0.293 5.293 12 C -0.067 4.067 13 C -0.231 4.231 14 C 0.137 3.863 15 C -0.470 4.470 16 H 0.105 0.895 17 C -0.143 4.143 18 N -0.404 5.404 19 Si 0.732 3.268 20 H -0.192 1.192 21 H -0.198 1.198 22 H -0.181 1.181 23 C -0.146 4.146 24 C -0.139 4.139 25 H 0.072 0.928 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.128 0.872 35 H 0.144 0.856 36 H 0.138 0.862 37 H 0.136 0.864 38 H 0.144 0.856 39 H 0.096 0.904 40 H 0.131 0.869 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -4.517 -11.223 -2.338 12.321 hybrid contribution -1.478 -0.068 1.060 1.820 sum -5.994 -11.290 -1.277 12.847 Atomic orbital electron populations 1.21781 0.96115 1.01228 1.01929 1.21554 0.95686 0.97242 1.01723 1.21623 0.94981 0.96120 1.02549 1.20503 0.95144 0.93397 1.01941 1.19684 1.02301 0.95835 0.93349 1.20856 1.01262 0.95151 0.96761 1.21398 0.98059 0.93381 0.98643 1.18696 0.94721 0.92544 0.92078 1.19575 1.02045 0.92116 1.10221 1.22087 0.93074 0.92649 0.95240 1.67313 1.34446 1.01375 1.26120 1.21724 0.94115 0.96798 0.94062 1.21928 1.00123 0.97870 1.03185 1.17738 0.90394 0.90040 0.88111 1.19620 1.08411 1.12104 1.06887 0.89518 1.26025 0.98322 0.93166 0.96783 1.69736 1.33476 1.18455 1.18699 0.86278 0.81975 0.78801 0.79788 1.19212 1.19790 1.18123 1.21253 1.01203 0.94628 0.97561 1.20737 1.01431 0.94985 0.96727 0.92784 0.93068 0.92735 0.92237 0.92199 0.91830 0.91919 0.91766 0.91706 0.87180 0.85576 0.86151 0.86449 0.85602 0.90383 0.86851 0.87290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.34 9.91 37.16 0.37 -0.97 16 2 C -0.12 -1.16 5.93 -26.73 -0.16 -1.32 16 3 C -0.12 -1.31 5.20 -26.73 -0.14 -1.45 16 4 C -0.07 -0.88 5.34 -27.88 -0.15 -1.03 16 5 C -0.11 -1.74 5.14 -104.50 -0.54 -2.27 16 6 C -0.12 -2.09 9.68 -39.64 -0.38 -2.47 16 7 C -0.10 -1.95 8.08 -39.16 -0.32 -2.26 16 8 C 0.02 0.43 5.00 -104.89 -0.52 -0.09 16 9 C -0.23 -5.57 5.54 -104.04 -0.58 -6.15 16 10 C 0.13 2.97 10.71 -17.22 -0.18 2.78 16 11 N -0.58 -14.07 10.32 -13.37 -0.14 -14.20 16 12 C 0.08 1.94 11.09 -18.02 -0.20 1.74 16 13 C -0.21 -5.28 8.72 -39.12 -0.34 -5.62 16 14 C 0.15 3.70 5.59 -106.26 -0.59 3.11 16 15 C -0.44 -10.94 7.30 -37.83 -0.28 -11.22 16 16 H 0.09 2.14 6.71 -52.49 -0.35 1.79 16 17 C 0.08 1.83 5.22 -17.31 -0.09 1.74 16 18 N -0.78 -18.87 10.92 55.56 0.61 -18.26 16 19 Si 0.91 17.76 29.59 -169.99 -5.03 12.73 16 20 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 21 H -0.27 -5.21 7.11 56.52 0.40 -4.81 16 22 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 23 C -0.13 -2.37 9.55 -39.16 -0.37 -2.75 16 24 C -0.12 -1.95 9.68 -39.64 -0.38 -2.33 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.06 0.78 8.14 -51.92 -0.42 0.35 16 31 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.06 0.71 8.08 -51.93 -0.42 0.29 16 33 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 34 H 0.11 1.65 8.06 -52.49 -0.42 1.23 16 35 H 0.13 2.72 7.37 -52.49 -0.39 2.33 16 36 H 0.12 2.49 8.05 -52.49 -0.42 2.06 16 37 H 0.12 2.48 8.06 -52.49 -0.42 2.06 16 38 H 0.13 3.21 6.24 -52.49 -0.33 2.88 16 39 H 0.28 6.25 8.29 -40.82 -0.34 5.92 16 40 H 0.11 1.99 8.05 -52.49 -0.42 1.57 16 41 H 0.11 1.48 8.06 -52.49 -0.42 1.06 16 LS Contribution 341.85 15.07 5.15 5.15 Total: -1.00 -26.55 341.85 -10.38 -36.93 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -6.11 Total: 8.23 kcal Atomic # 6 Polarization: -25.71 SS G_CDS: -4.86 Total: -30.57 kcal Atomic # 7 Polarization: -32.93 SS G_CDS: 0.47 Total: -32.47 kcal Atomic # 14 Polarization: 17.76 SS G_CDS: -5.03 Total: 12.73 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -26.55 -10.38 -36.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241053225.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.421 kcal (2) G-P(sol) polarization free energy of solvation -26.547 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds