Wall clock time and date at job start Tue Mar 31 2020 05:17:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52994 * 109.47239 * 2 1 4 4 C 1.53008 * 109.47051 * 179.97438 * 3 2 1 5 5 C 1.50698 * 109.47102 * 180.02562 * 4 3 2 6 6 C 1.38394 * 119.85125 * 90.00055 * 5 4 3 7 7 C 1.37921 * 120.15182 * 180.25146 * 6 5 4 8 8 C 1.39672 * 119.84718 * 359.52101 * 7 6 5 9 9 C 1.47846 * 120.15034 * 180.22925 * 8 7 6 10 10 C 1.39305 * 120.77938 * 130.22680 * 9 8 7 11 11 N 1.31675 * 120.66156 * 179.97438 * 10 9 8 12 12 C 1.32209 * 122.50346 * 0.02562 * 11 10 9 13 13 C 1.36490 * 121.50681 * 0.02744 * 12 11 10 14 14 C 1.41123 * 119.10516 * 359.67289 * 13 12 11 15 15 C 1.40932 * 121.10919 * 180.30138 * 14 13 12 16 16 H 1.07995 * 119.99858 * 154.73140 * 15 14 13 17 17 C 1.40183 * 119.99936 * 334.73143 * 15 14 13 18 18 N 1.30676 * 119.99999 * 344.80403 * 17 15 14 19 19 Si 1.86802 * 119.99954 * 164.80603 * 17 15 14 20 20 H 1.48498 * 109.46886 * 94.73783 * 19 17 15 21 21 H 1.48495 * 109.47216 * 214.73714 * 19 17 15 22 22 H 1.48500 * 109.46873 * 334.74124 * 19 17 15 23 23 C 1.39672 * 119.69585 * 0.45457 * 8 7 6 24 24 C 1.37920 * 119.84799 * 359.77576 * 23 8 7 25 25 H 1.09003 * 109.46921 * 59.99700 * 1 2 3 26 26 H 1.08998 * 109.47657 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46919 * 300.00328 * 1 2 3 28 28 H 1.09001 * 109.46515 * 239.99976 * 2 1 3 29 29 H 1.09003 * 109.46921 * 120.00300 * 2 1 3 30 30 H 1.09007 * 109.47002 * 60.00603 * 3 2 1 31 31 H 1.08994 * 109.47786 * 300.00486 * 3 2 1 32 32 H 1.08994 * 109.46853 * 60.00319 * 4 3 2 33 33 H 1.09003 * 109.47087 * 300.00286 * 4 3 2 34 34 H 1.07995 * 119.92378 * 359.97438 * 6 5 4 35 35 H 1.07998 * 120.07590 * 179.74263 * 7 6 5 36 36 H 1.07998 * 119.66961 * 359.97438 * 10 9 8 37 37 H 1.07995 * 119.24813 * 179.97438 * 12 11 10 38 38 H 1.07999 * 120.45031 * 179.97438 * 13 12 11 39 39 H 0.96998 * 120.00266 * 179.97438 * 18 17 15 40 40 H 1.07999 * 120.07175 * 179.79155 * 23 8 7 41 41 H 1.08000 * 119.92493 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5701 1.4424 0.0006 5 6 4.0725 2.8632 0.0013 6 6 4.3016 3.5123 1.2019 7 6 4.7564 4.8143 1.2097 8 6 4.9953 5.4744 0.0022 9 6 5.4878 6.8685 0.0028 10 6 6.5901 7.2354 -0.7657 11 7 7.0264 8.4778 -0.7639 12 6 6.4554 9.4302 -0.0464 13 6 5.3703 9.1762 0.7416 14 6 4.8440 7.8674 0.7839 15 6 3.7211 7.5595 1.5780 16 1 3.0885 6.7238 1.3177 17 6 3.4253 8.3380 2.7056 18 7 4.3266 9.1478 3.1952 19 14 1.7429 8.2179 3.5084 20 1 1.7970 7.2433 4.6275 21 1 1.3475 9.5504 4.0310 22 1 0.7468 7.7642 2.5047 23 6 4.7624 4.8131 -1.2058 24 6 4.3030 3.5127 -1.1990 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3634 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8932 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6767 1.9563 0.8901 31 1 1.6767 1.9564 -0.8899 32 1 3.9337 0.9285 -0.8891 33 1 3.9330 0.9286 0.8909 34 1 4.1196 2.9996 2.1348 35 1 4.9309 5.3210 2.1473 36 1 7.0919 6.4935 -1.3692 37 1 6.8573 10.4319 -0.0839 38 1 4.9175 9.9671 1.3210 39 1 4.1218 9.6868 3.9752 40 1 4.9418 5.3189 -2.1430 41 1 4.1220 3.0003 -2.1323 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241053225.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:04 Heat of formation + Delta-G solvation = 3.390679 kcal Electronic energy + Delta-G solvation = -20831.305814 eV Core-core repulsion = 17866.520466 eV Total energy + Delta-G solvation = -2964.785348 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.69302 -39.54776 -36.63856 -36.06264 -33.97494 -32.32884 -31.64010 -31.29181 -28.83010 -27.76485 -25.15309 -23.84677 -23.05756 -22.83792 -21.88921 -21.22752 -19.51809 -17.57317 -17.22451 -16.63871 -16.30177 -16.11530 -16.08700 -15.46661 -14.89126 -14.84224 -14.45019 -14.20424 -14.14205 -14.12055 -13.64840 -13.46584 -13.36306 -13.21157 -12.92048 -12.70036 -12.41574 -12.16319 -12.04872 -11.93634 -11.78798 -11.65382 -11.38751 -11.32969 -11.25795 -10.11447 -9.94294 -9.70331 -9.65687 -8.96468 -8.67530 -6.54482 0.29409 0.68491 0.95204 1.09256 1.34572 1.46654 1.52325 2.13409 2.72340 3.01233 3.69311 3.89997 3.96915 4.04593 4.22424 4.23849 4.25779 4.32698 4.44150 4.50532 4.54802 4.73575 4.80733 4.86680 4.89573 4.95869 4.99368 5.03712 5.07873 5.18932 5.19275 5.30467 5.34629 5.35863 5.41288 5.44634 5.53362 5.55913 5.67698 5.85617 5.87825 6.03629 6.18574 6.29536 6.50485 6.75769 6.79676 7.68853 8.18086 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014364 B = 0.005109 C = 0.003951 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1948.787171 B = 5479.529671 C = 7084.664212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.120 4.120 3 C -0.113 4.113 4 C -0.069 4.069 5 C -0.098 4.098 6 C -0.124 4.124 7 C -0.113 4.113 8 C -0.013 4.013 9 C -0.237 4.237 10 C 0.116 3.884 11 N -0.590 5.590 12 C 0.076 3.924 13 C -0.232 4.232 14 C 0.115 3.885 15 C -0.458 4.458 16 H 0.080 0.920 17 C 0.042 3.958 18 N -0.807 5.807 19 Si 0.976 3.024 20 H -0.259 1.259 21 H -0.262 1.262 22 H -0.260 1.260 23 C -0.131 4.131 24 C -0.116 4.116 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.048 0.952 28 H 0.070 0.930 29 H 0.066 0.934 30 H 0.050 0.950 31 H 0.056 0.944 32 H 0.084 0.916 33 H 0.077 0.923 34 H 0.130 0.870 35 H 0.099 0.901 36 H 0.145 0.855 37 H 0.141 0.859 38 H 0.117 0.883 39 H 0.294 0.706 40 H 0.119 0.881 41 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.548 -14.223 -2.445 15.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.158 4.158 3 C -0.151 4.151 4 C -0.106 4.106 5 C -0.098 4.098 6 C -0.142 4.142 7 C -0.131 4.131 8 C -0.014 4.014 9 C -0.242 4.242 10 C -0.041 4.041 11 N -0.304 5.304 12 C -0.072 4.072 13 C -0.254 4.254 14 C 0.108 3.892 15 C -0.488 4.488 16 H 0.098 0.902 17 C -0.177 4.177 18 N -0.432 5.432 19 Si 0.796 3.204 20 H -0.184 1.184 21 H -0.186 1.186 22 H -0.184 1.184 23 C -0.150 4.150 24 C -0.134 4.134 25 H 0.070 0.930 26 H 0.081 0.919 27 H 0.067 0.933 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.069 0.931 31 H 0.075 0.925 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.148 0.852 35 H 0.117 0.883 36 H 0.162 0.838 37 H 0.159 0.841 38 H 0.134 0.866 39 H 0.105 0.895 40 H 0.137 0.863 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -5.749 -13.781 -2.762 15.185 hybrid contribution -1.066 0.611 1.157 1.688 sum -6.815 -13.169 -1.605 14.915 Atomic orbital electron populations 1.21794 0.95874 1.01949 1.01604 1.21519 0.95889 0.95791 1.02573 1.21586 0.94316 0.97459 1.01692 1.20572 0.95530 0.90940 1.03585 1.20123 0.99909 0.97419 0.92396 1.21082 1.00524 0.93986 0.98601 1.21251 0.99737 0.94824 0.97294 1.18695 0.97351 0.91764 0.93569 1.19913 1.01703 0.93423 1.09158 1.22482 0.93146 0.92899 0.95556 1.67371 1.34686 1.01891 1.26471 1.22054 0.93754 0.97895 0.93526 1.21937 1.01295 0.97842 1.04340 1.18136 0.91206 0.90718 0.89178 1.19704 1.08629 1.12681 1.07766 0.90162 1.26800 1.01663 0.92416 0.96782 1.69771 1.35169 1.18935 1.19311 0.85270 0.77107 0.79296 0.78724 1.18384 1.18608 1.18367 1.21369 1.01201 0.95681 0.96704 1.21103 0.99891 0.93978 0.98443 0.92963 0.91858 0.93271 0.91162 0.91558 0.93093 0.92483 0.89787 0.90474 0.85163 0.88292 0.83810 0.84116 0.86560 0.89496 0.86272 0.83950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.31 9.91 71.98 0.71 -1.60 16 2 C -0.12 -1.84 5.93 30.59 0.18 -1.66 16 3 C -0.11 -2.22 5.20 30.59 0.16 -2.06 16 4 C -0.07 -1.41 5.34 29.85 0.16 -1.25 16 5 C -0.10 -2.80 5.14 -19.79 -0.10 -2.90 16 6 C -0.12 -4.10 9.68 22.23 0.22 -3.88 16 7 C -0.11 -4.64 8.08 22.54 0.18 -4.45 16 8 C -0.01 -0.56 5.00 -20.04 -0.10 -0.66 16 9 C -0.24 -11.64 5.54 -19.49 -0.11 -11.74 16 10 C 0.12 5.48 10.71 84.97 0.91 6.39 16 11 N -0.59 -29.10 10.32 -196.20 -2.02 -31.12 16 12 C 0.08 3.74 11.09 84.23 0.93 4.67 16 13 C -0.23 -12.21 8.72 22.57 0.20 -12.01 16 14 C 0.12 6.15 5.59 -20.92 -0.12 6.03 16 15 C -0.46 -23.64 7.30 23.40 0.17 -23.47 16 16 H 0.08 4.12 6.71 -2.91 -0.02 4.10 16 17 C 0.04 2.00 5.22 85.34 0.45 2.45 16 18 N -0.81 -40.15 10.92 21.86 0.24 -39.91 16 19 Si 0.98 36.62 29.59 68.60 2.03 38.65 16 20 H -0.26 -9.35 7.11 99.48 0.71 -8.64 16 21 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 22 H -0.26 -9.76 7.11 99.48 0.71 -9.05 16 23 C -0.13 -4.75 9.55 22.54 0.22 -4.53 16 24 C -0.12 -3.44 9.68 22.23 0.22 -3.23 16 25 H 0.05 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 27 H 0.05 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 29 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 30 H 0.05 1.13 8.14 -2.38 -0.02 1.11 16 31 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 32 H 0.08 1.45 8.08 -2.39 -0.02 1.43 16 33 H 0.08 1.44 8.08 -2.39 -0.02 1.42 16 34 H 0.13 3.69 8.06 -2.91 -0.02 3.67 16 35 H 0.10 4.52 7.37 -2.91 -0.02 4.49 16 36 H 0.14 5.94 8.05 -2.91 -0.02 5.91 16 37 H 0.14 6.03 8.06 -2.91 -0.02 6.01 16 38 H 0.12 6.22 6.24 -2.91 -0.02 6.20 16 39 H 0.29 13.11 8.29 -92.71 -0.77 12.34 16 40 H 0.12 4.07 8.05 -2.91 -0.02 4.05 16 41 H 0.14 3.27 8.06 -2.91 -0.02 3.25 16 Total: -1.00 -58.78 341.85 5.52 -53.27 By element: Atomic # 1 Polarization: 32.02 SS G_CDS: 1.00 Total: 33.02 kcal Atomic # 6 Polarization: -58.17 SS G_CDS: 4.27 Total: -53.90 kcal Atomic # 7 Polarization: -69.25 SS G_CDS: -1.79 Total: -71.03 kcal Atomic # 14 Polarization: 36.62 SS G_CDS: 2.03 Total: 38.65 kcal Total: -58.78 5.52 -53.27 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241053225.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.656 kcal (2) G-P(sol) polarization free energy of solvation -58.782 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.126 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.517 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.265 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.391 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds