Wall clock time and date at job start Tue Mar 31 2020 05:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52995 * 109.47179 * 2 1 4 4 C 1.53002 * 109.47179 * 180.02562 * 3 2 1 5 5 C 1.50697 * 109.47514 * 180.02562 * 4 3 2 6 6 C 1.38318 * 119.88142 * 89.99302 * 5 4 3 7 7 C 1.38027 * 120.11763 * 179.97438 * 6 5 4 8 8 C 1.39328 * 119.88096 * 0.02788 * 7 6 5 9 9 C 1.48408 * 120.11828 * 179.97438 * 8 7 6 10 10 C 1.39702 * 120.41485 * 0.02581 * 9 8 7 11 11 N 1.31913 * 121.15357 * 179.97438 * 10 9 8 12 12 C 1.31519 * 122.11967 * 359.71577 * 11 10 9 13 13 C 1.40774 * 120.66438 * 0.55171 * 12 11 10 14 14 C 1.41440 * 120.60393 * 179.74683 * 13 12 11 15 15 H 1.07996 * 119.99840 * 23.20234 * 14 13 12 16 16 C 1.39931 * 120.00040 * 203.20681 * 14 13 12 17 17 N 1.30833 * 119.99958 * 17.53984 * 16 14 13 18 18 Si 1.86796 * 120.00303 * 197.54681 * 16 14 13 19 19 H 1.48500 * 109.47461 * 89.99692 * 18 16 14 20 20 H 1.48502 * 109.47486 * 210.00037 * 18 16 14 21 21 H 1.48505 * 109.46744 * 329.99720 * 18 16 14 22 22 C 1.39142 * 120.40818 * 179.97438 * 9 8 7 23 23 C 1.39322 * 119.75747 * 0.27240 * 8 7 6 24 24 C 1.38027 * 119.88178 * 359.42689 * 23 8 7 25 25 H 1.08996 * 109.46943 * 59.99835 * 1 2 3 26 26 H 1.08994 * 109.47053 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47114 * 300.00088 * 1 2 3 28 28 H 1.09006 * 109.47114 * 239.99911 * 2 1 3 29 29 H 1.08996 * 109.46943 * 120.00165 * 2 1 3 30 30 H 1.09002 * 109.47159 * 60.00447 * 3 2 1 31 31 H 1.08996 * 109.47317 * 299.99935 * 3 2 1 32 32 H 1.09000 * 109.47055 * 59.99481 * 4 3 2 33 33 H 1.09010 * 109.46996 * 300.00320 * 4 3 2 34 34 H 1.07995 * 119.94132 * 359.97438 * 6 5 4 35 35 H 1.08000 * 120.05967 * 180.02562 * 7 6 5 36 36 H 1.08000 * 119.42114 * 359.97438 * 10 9 8 37 37 H 1.07998 * 119.66677 * 180.29003 * 12 11 10 38 38 H 0.97003 * 120.00119 * 179.97438 * 17 16 14 39 39 H 1.07997 * 120.95223 * 0.02562 * 22 9 8 40 40 H 1.08004 * 120.06206 * 179.69772 * 23 8 7 41 41 H 1.08001 * 119.94454 * 180.27363 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 6 4.0725 2.8632 0.0000 6 6 4.3026 3.5122 1.1996 7 6 4.7632 4.8133 1.2058 8 6 4.9959 5.4731 0.0010 9 6 5.4907 6.8723 0.0015 10 6 5.7274 7.5382 1.2066 11 7 6.1677 8.7816 1.2241 12 6 6.4104 9.4531 0.1197 13 6 6.1951 8.8641 -1.1407 14 6 6.4516 9.5893 -2.3277 15 1 7.1412 10.4202 -2.3144 16 6 5.8116 9.2301 -3.5191 17 7 4.7439 8.4747 -3.4861 18 14 6.4817 9.8290 -5.1566 19 1 7.4645 8.8457 -5.6788 20 1 5.3653 9.9748 -6.1249 21 1 7.1482 11.1426 -4.9681 22 6 5.7256 7.5368 -1.1982 23 6 4.7564 4.8167 -1.2044 24 6 4.3017 3.5135 -1.1991 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.8934 -0.5139 -0.8900 29 1 1.8933 -0.5138 0.8899 30 1 1.6767 1.9563 0.8900 31 1 1.6767 1.9563 -0.8899 32 1 3.9330 0.9287 -0.8908 33 1 3.9338 0.9284 0.8892 34 1 4.1215 3.0000 2.1329 35 1 4.9430 5.3190 2.1430 36 1 5.5468 7.0261 2.1401 37 1 6.7746 10.4680 0.1802 38 1 4.3000 8.2259 -4.3120 39 1 5.5527 7.0493 -2.1462 40 1 4.9305 5.3251 -2.1412 41 1 4.1200 3.0021 -2.1329 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241053335.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:32 Heat of formation + Delta-G solvation = 14.039624 kcal Electronic energy + Delta-G solvation = -20414.099291 eV Core-core repulsion = 17449.775716 eV Total energy + Delta-G solvation = -2964.323575 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.30684 -38.02473 -35.79663 -34.14894 -32.87454 -30.80953 -30.32979 -30.11059 -27.40776 -25.71444 -24.15453 -22.82273 -21.78957 -21.08845 -20.95262 -19.92107 -17.46249 -16.20996 -15.74923 -15.39805 -15.27978 -14.85077 -14.56723 -14.14013 -13.86161 -13.38970 -13.19140 -12.99398 -12.81596 -12.74832 -12.35415 -12.16022 -11.75314 -11.61850 -11.40438 -11.37010 -11.26174 -11.21605 -11.13712 -10.72916 -10.63132 -10.51951 -10.34500 -9.85327 -9.43557 -9.03541 -8.50574 -8.15170 -7.90587 -7.19010 -6.89029 -4.55216 1.45256 1.85786 2.65953 2.96914 2.99785 3.02358 3.14986 3.80675 4.23381 4.59466 4.72251 4.79910 4.97338 5.10908 5.19703 5.36615 5.37762 5.52221 5.60352 5.61673 5.63140 5.67347 5.70452 5.84253 5.90469 5.97007 6.00205 6.04200 6.20939 6.25798 6.34387 6.39572 6.57013 6.69682 6.78325 6.83618 6.97409 7.00672 7.13612 7.23896 7.45711 7.65638 7.79191 7.87861 8.35663 8.60920 8.64280 9.56896 9.99704 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018650 B = 0.003755 C = 0.003248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.988477 B = 7454.691895 C = 8619.618046 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.115 4.115 4 C -0.075 4.075 5 C -0.103 4.103 6 C -0.119 4.119 7 C -0.118 4.118 8 C -0.012 4.012 9 C -0.094 4.094 10 C -0.025 4.025 11 N -0.470 5.470 12 C -0.018 4.018 13 C 0.060 3.940 14 C -0.449 4.449 15 H 0.084 0.916 16 C 0.074 3.926 17 N -0.790 5.790 18 Si 0.913 3.087 19 H -0.266 1.266 20 H -0.276 1.276 21 H -0.260 1.260 22 C -0.117 4.117 23 C -0.111 4.111 24 C -0.117 4.117 25 H 0.054 0.946 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.060 0.940 30 H 0.063 0.937 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.114 0.886 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.284 0.716 39 H 0.133 0.867 40 H 0.128 0.872 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.605 -13.625 1.651 14.477 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.162 4.162 3 C -0.153 4.153 4 C -0.112 4.112 5 C -0.103 4.103 6 C -0.137 4.137 7 C -0.136 4.136 8 C -0.013 4.013 9 C -0.096 4.096 10 C -0.183 4.183 11 N -0.177 5.177 12 C -0.179 4.179 13 C 0.056 3.944 14 C -0.479 4.479 15 H 0.102 0.898 16 C -0.144 4.144 17 N -0.414 5.414 18 Si 0.737 3.263 19 H -0.191 1.191 20 H -0.202 1.202 21 H -0.184 1.184 22 C -0.142 4.142 23 C -0.128 4.128 24 C -0.135 4.135 25 H 0.073 0.927 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.132 0.868 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.144 0.856 38 H 0.095 0.905 39 H 0.151 0.849 40 H 0.145 0.855 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -4.661 -13.320 2.298 14.298 hybrid contribution -0.009 -0.087 -1.664 1.666 sum -4.671 -13.407 0.634 14.211 Atomic orbital electron populations 1.21780 0.96031 1.01325 1.01936 1.21553 0.95762 0.97098 1.01815 1.21620 0.94760 0.96324 1.02569 1.20540 0.95310 0.93103 1.02256 1.19750 1.01296 0.95987 0.93306 1.20828 1.00921 0.94891 0.97030 1.21217 1.00089 0.94504 0.97823 1.18979 0.96349 0.93200 0.92748 1.19477 1.02300 0.92319 0.95485 1.21782 1.08834 0.92423 0.95231 1.66938 1.10087 1.08003 1.32653 1.22539 1.08542 0.98925 0.87852 1.18490 0.90383 0.91852 0.93689 1.19571 1.22395 1.13815 0.92090 0.89766 1.25978 0.93195 0.93658 1.01613 1.69793 1.13218 1.28004 1.30416 0.86227 0.79476 0.80352 0.80271 1.19119 1.20155 1.18396 1.21849 1.01873 0.94134 0.96369 1.21362 0.98844 0.94261 0.98380 1.20878 1.00642 0.94871 0.97078 0.92728 0.92993 0.92752 0.92142 0.92164 0.91857 0.91811 0.91479 0.91509 0.86753 0.85977 0.86076 0.85574 0.90509 0.84931 0.85461 0.86730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.91 37.16 0.37 -0.85 16 2 C -0.12 -1.05 5.93 -26.73 -0.16 -1.21 16 3 C -0.12 -1.17 5.20 -26.73 -0.14 -1.31 16 4 C -0.07 -0.82 5.34 -27.88 -0.15 -0.97 16 5 C -0.10 -1.47 5.14 -104.56 -0.54 -2.01 16 6 C -0.12 -1.76 9.68 -39.63 -0.38 -2.15 16 7 C -0.12 -2.05 9.44 -39.25 -0.37 -2.42 16 8 C -0.01 -0.24 5.88 -104.90 -0.62 -0.86 16 9 C -0.09 -2.19 5.88 -104.83 -0.62 -2.80 16 10 C -0.02 -0.58 10.60 -16.97 -0.18 -0.76 16 11 N -0.47 -11.71 10.32 -12.29 -0.13 -11.84 16 12 C -0.02 -0.45 10.96 -16.73 -0.18 -0.63 16 13 C 0.06 1.57 5.59 -106.71 -0.60 0.98 16 14 C -0.45 -11.39 9.08 -37.73 -0.34 -11.74 16 15 H 0.08 2.03 7.90 -52.49 -0.41 1.62 16 16 C 0.07 1.77 5.18 -17.34 -0.09 1.68 16 17 N -0.79 -19.39 10.92 55.55 0.61 -18.78 16 18 Si 0.91 17.81 29.59 -169.99 -5.03 12.78 16 19 H -0.27 -5.15 7.11 56.52 0.40 -4.75 16 20 H -0.28 -5.29 7.11 56.52 0.40 -4.89 16 21 H -0.26 -5.03 7.11 56.52 0.40 -4.62 16 22 C -0.12 -2.96 8.17 -38.23 -0.31 -3.27 16 23 C -0.11 -2.07 9.43 -39.26 -0.37 -2.44 16 24 C -0.12 -1.83 9.68 -39.63 -0.38 -2.22 16 25 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 26 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 31 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.07 0.68 8.08 -51.93 -0.42 0.27 16 33 H 0.07 0.66 8.08 -51.92 -0.42 0.24 16 34 H 0.11 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.12 1.97 6.22 -52.49 -0.33 1.64 16 36 H 0.12 2.49 6.20 -52.49 -0.33 2.16 16 37 H 0.13 2.93 8.06 -52.49 -0.42 2.51 16 38 H 0.28 6.32 8.30 -40.82 -0.34 5.98 16 39 H 0.13 3.35 4.44 -52.49 -0.23 3.12 16 40 H 0.13 2.49 6.26 -52.48 -0.33 2.16 16 41 H 0.11 1.55 8.06 -52.49 -0.42 1.12 16 LS Contribution 339.90 15.07 5.12 5.12 Total: -1.00 -27.22 339.90 -10.32 -37.54 By element: Atomic # 1 Polarization: 13.97 SS G_CDS: -5.83 Total: 8.14 kcal Atomic # 6 Polarization: -27.91 SS G_CDS: -5.06 Total: -32.97 kcal Atomic # 7 Polarization: -31.10 SS G_CDS: 0.48 Total: -30.62 kcal Atomic # 14 Polarization: 17.81 SS G_CDS: -5.03 Total: 12.78 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -27.22 -10.32 -37.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241053335.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.577 kcal (2) G-P(sol) polarization free energy of solvation -27.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.360 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.320 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.040 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds