Wall clock time and date at job start Tue Mar 31 2020 05:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52998 * 109.47399 * 2 1 4 4 C 1.52999 * 109.46915 * 179.97438 * 3 2 1 5 5 C 1.50702 * 109.46676 * 180.02562 * 4 3 2 6 6 C 1.38390 * 119.85507 * 90.00039 * 5 4 3 7 7 C 1.37935 * 120.14823 * 179.97438 * 6 5 4 8 8 C 1.39621 * 119.84904 * 0.02562 * 7 6 5 9 9 C 1.47967 * 120.14217 * 179.97438 * 8 7 6 10 10 C 1.40269 * 120.34426 * 180.20294 * 9 8 7 11 11 C 1.36690 * 118.60090 * 180.26748 * 10 9 8 12 12 C 1.40866 * 119.25608 * 359.75628 * 11 10 9 13 13 C 1.41000 * 119.67898 * 180.02562 * 12 11 10 14 14 H 1.07993 * 119.99919 * 0.02562 * 13 12 11 15 15 C 1.40107 * 119.99617 * 180.02562 * 13 12 11 16 16 N 1.30710 * 120.00075 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99724 * 179.97438 * 15 13 12 18 18 H 1.48502 * 109.47163 * 59.99647 * 17 15 13 19 19 H 1.48495 * 109.46797 * 180.02562 * 17 15 13 20 20 H 1.48503 * 109.46882 * 299.99785 * 17 15 13 21 21 N 1.33775 * 120.63692 * 0.02562 * 12 11 10 22 22 C 1.31192 * 121.50953 * 359.97438 * 21 12 11 23 23 C 1.39624 * 119.71004 * 0.25110 * 8 7 6 24 24 C 1.37927 * 119.85030 * 359.47278 * 23 8 7 25 25 H 1.09000 * 109.47017 * 300.00159 * 1 2 3 26 26 H 1.09008 * 109.47042 * 59.99982 * 1 2 3 27 27 H 1.08998 * 109.47496 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47017 * 239.99841 * 2 1 3 29 29 H 1.09002 * 109.46471 * 120.00395 * 2 1 3 30 30 H 1.09000 * 109.47166 * 59.99932 * 3 2 1 31 31 H 1.09000 * 109.46915 * 300.00262 * 3 2 1 32 32 H 1.09000 * 109.47147 * 60.00058 * 4 3 2 33 33 H 1.08995 * 109.47218 * 299.99788 * 4 3 2 34 34 H 1.07997 * 119.92791 * 0.02562 * 6 5 4 35 35 H 1.08003 * 120.07350 * 180.02562 * 7 6 5 36 36 H 1.07996 * 120.69850 * 0.02783 * 10 9 8 37 37 H 1.08001 * 120.36892 * 179.77475 * 11 10 9 38 38 H 0.97001 * 119.99630 * 180.02562 * 16 15 13 39 39 H 1.08002 * 119.65427 * 179.97438 * 22 21 12 40 40 H 1.08001 * 120.07202 * 179.74991 * 23 8 7 41 41 H 1.08004 * 119.92864 * 180.25230 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5701 1.4423 0.0006 5 6 4.0724 2.8632 0.0013 6 6 4.3016 3.5123 1.2018 7 6 4.7619 4.8126 1.2094 8 6 4.9961 5.4739 0.0023 9 6 5.4893 6.8690 0.0030 10 6 5.7220 7.5389 -1.2073 11 6 6.1828 8.8251 -1.1651 12 6 6.4037 9.4366 0.0845 13 6 6.8784 10.7632 0.1383 14 1 7.0705 11.3055 -0.7756 15 6 7.1010 11.3777 1.3776 16 7 6.8680 10.7215 2.4838 17 14 7.7306 13.1350 1.4490 18 1 6.7638 14.0352 0.7705 19 1 7.8823 13.5491 2.8670 20 1 9.0468 13.2173 0.7663 21 7 6.1674 8.7709 1.2205 22 6 5.7250 7.5359 1.2122 23 6 4.7573 4.8151 -1.2053 24 6 4.3025 3.5130 -1.1988 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3634 -1.0276 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.8933 -0.5139 0.8900 30 1 1.6768 1.9563 0.8900 31 1 1.6767 1.9563 -0.8900 32 1 3.9338 0.9283 -0.8891 33 1 3.9330 0.9287 0.8908 34 1 4.1204 2.9995 2.1348 35 1 4.9407 5.3179 2.1471 36 1 5.5445 7.0475 -2.1524 37 1 6.3751 9.3664 -2.0797 38 1 7.0217 11.1471 3.3417 39 1 5.5447 7.0265 2.1473 40 1 4.9326 5.3225 -2.1425 41 1 4.1213 3.0008 -2.1322 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241053383.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:34 Heat of formation + Delta-G solvation = 23.365266 kcal Electronic energy + Delta-G solvation = -20078.119038 eV Core-core repulsion = 17114.199853 eV Total energy + Delta-G solvation = -2963.919185 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.15870 -37.94675 -35.76186 -33.93770 -32.45215 -31.01621 -30.23536 -30.06062 -27.94759 -25.64770 -23.68982 -22.92446 -21.68052 -21.06360 -20.90389 -19.90207 -17.64605 -16.27559 -15.77663 -15.53828 -14.95877 -14.67853 -14.27396 -14.09833 -13.73880 -13.39100 -13.13322 -12.87830 -12.71482 -12.69494 -12.45323 -12.13692 -11.92474 -11.55544 -11.35502 -11.30845 -11.15273 -11.12635 -10.94554 -10.74045 -10.64018 -10.37919 -10.24041 -10.00536 -9.60277 -8.72747 -8.43828 -8.24703 -7.68461 -7.14583 -6.58472 -4.63302 1.60149 1.94769 2.76014 2.98626 3.00485 3.01774 3.16023 3.80109 4.30307 4.69468 4.78463 4.81890 5.00221 5.15486 5.26023 5.42253 5.44470 5.63234 5.63982 5.68781 5.70796 5.73955 5.81940 5.87885 5.95632 5.97643 6.01493 6.07260 6.12388 6.26540 6.29609 6.48664 6.60747 6.68027 6.72834 6.91438 6.97210 7.07462 7.09501 7.27709 7.46466 7.62561 7.75793 7.89704 8.05488 8.45635 8.75127 9.95468 10.11466 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.044775 B = 0.002740 C = 0.002664 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 625.201470 B =10218.024914 C =10509.768263 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.125 4.125 3 C -0.114 4.114 4 C -0.071 4.071 5 C -0.130 4.130 6 C -0.104 4.104 7 C -0.145 4.145 8 C 0.031 3.969 9 C -0.278 4.278 10 C -0.036 4.036 11 C -0.273 4.273 12 C 0.251 3.749 13 C -0.408 4.408 14 H 0.087 0.913 15 C 0.063 3.937 16 N -0.700 5.700 17 Si 0.912 3.088 18 H -0.263 1.263 19 H -0.275 1.275 20 H -0.263 1.263 21 N -0.488 5.488 22 C 0.156 3.844 23 C -0.148 4.148 24 C -0.106 4.106 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.051 0.949 28 H 0.059 0.941 29 H 0.059 0.941 30 H 0.062 0.938 31 H 0.061 0.939 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.110 0.890 35 H 0.119 0.881 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.278 0.722 39 H 0.123 0.877 40 H 0.115 0.885 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.193 -13.060 -2.490 14.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.163 4.163 3 C -0.152 4.152 4 C -0.108 4.108 5 C -0.130 4.130 6 C -0.122 4.122 7 C -0.163 4.163 8 C 0.030 3.970 9 C -0.283 4.283 10 C -0.059 4.059 11 C -0.295 4.295 12 C 0.128 3.872 13 C -0.437 4.437 14 H 0.105 0.895 15 C -0.165 4.165 16 N -0.320 5.320 17 Si 0.736 3.264 18 H -0.187 1.187 19 H -0.200 1.200 20 H -0.187 1.187 21 N -0.200 5.200 22 C -0.013 4.013 23 C -0.166 4.166 24 C -0.124 4.124 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.070 0.930 28 H 0.078 0.922 29 H 0.078 0.922 30 H 0.081 0.919 31 H 0.080 0.920 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.129 0.871 35 H 0.137 0.863 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.089 0.911 39 H 0.140 0.860 40 H 0.133 0.867 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -5.999 -12.518 -1.479 13.960 hybrid contribution 0.111 0.327 -0.804 0.875 sum -5.887 -12.190 -2.283 13.729 Atomic orbital electron populations 1.21781 0.96085 1.01287 1.01888 1.21562 0.95707 0.97236 1.01780 1.21622 0.95039 0.96128 1.02413 1.20475 0.95069 0.93347 1.01942 1.19616 1.04038 0.96084 0.93276 1.20790 0.99828 0.94810 0.96819 1.21164 1.02624 0.94762 0.97792 1.18870 0.93083 0.92791 0.92294 1.19069 1.19940 0.94327 0.94956 1.20662 0.95232 0.94114 0.95881 1.21436 1.13155 0.96634 0.98291 1.18671 0.88631 0.93127 0.86749 1.19756 1.34200 0.96156 0.93617 0.89452 1.26205 0.94580 1.00267 0.95430 1.70110 1.27288 1.36079 0.98477 0.86298 0.80282 0.81413 0.78424 1.18699 1.19972 1.18705 1.68800 1.16280 1.06250 1.28664 1.22780 0.91853 0.91637 0.95018 1.21125 1.03011 0.94757 0.97696 1.20771 1.00031 0.94778 0.96793 0.92753 0.92790 0.93026 0.92207 0.92174 0.91927 0.91979 0.91802 0.91753 0.87144 0.86331 0.88344 0.88143 0.91093 0.86000 0.86718 0.87282 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.91 37.16 0.37 -0.83 16 2 C -0.13 -1.06 5.93 -26.73 -0.16 -1.22 16 3 C -0.11 -1.17 5.20 -26.73 -0.14 -1.31 16 4 C -0.07 -0.80 5.34 -27.88 -0.15 -0.94 16 5 C -0.13 -1.88 5.14 -104.51 -0.54 -2.42 16 6 C -0.10 -1.61 9.68 -39.64 -0.38 -1.99 16 7 C -0.15 -2.58 9.44 -39.18 -0.37 -2.95 16 8 C 0.03 0.60 5.88 -104.88 -0.62 -0.01 16 9 C -0.28 -6.26 5.92 -104.45 -0.62 -6.87 16 10 C -0.04 -0.80 9.46 -39.38 -0.37 -1.17 16 11 C -0.27 -6.58 9.76 -39.15 -0.38 -6.96 16 12 C 0.25 6.73 6.55 -84.98 -0.56 6.17 16 13 C -0.41 -10.53 9.12 -37.83 -0.35 -10.87 16 14 H 0.09 2.08 7.85 -52.49 -0.41 1.66 16 15 C 0.06 1.53 5.50 -17.33 -0.10 1.44 16 16 N -0.70 -18.02 11.44 55.56 0.64 -17.38 16 17 Si 0.91 17.77 29.56 -169.99 -5.02 12.74 16 18 H -0.26 -5.04 7.11 56.52 0.40 -4.63 16 19 H -0.28 -5.22 7.11 56.52 0.40 -4.82 16 20 H -0.26 -5.04 7.11 56.52 0.40 -4.64 16 21 N -0.49 -13.26 7.83 -10.85 -0.08 -13.35 16 22 C 0.16 3.78 10.60 -17.13 -0.18 3.60 16 23 C -0.15 -2.59 9.44 -39.18 -0.37 -2.96 16 24 C -0.11 -1.61 9.68 -39.64 -0.38 -2.00 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 27 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 28 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 31 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 32 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 33 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 34 H 0.11 1.44 8.06 -52.49 -0.42 1.02 16 35 H 0.12 2.03 6.22 -52.48 -0.33 1.70 16 36 H 0.10 1.91 6.30 -52.49 -0.33 1.58 16 37 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 38 H 0.28 6.44 8.29 -40.82 -0.34 6.10 16 39 H 0.12 2.66 6.21 -52.49 -0.33 2.33 16 40 H 0.11 1.90 6.25 -52.49 -0.33 1.58 16 41 H 0.11 1.40 8.06 -52.48 -0.42 0.98 16 LS Contribution 341.17 15.07 5.14 5.14 Total: -1.00 -27.91 341.17 -10.55 -38.45 By element: Atomic # 1 Polarization: 11.63 SS G_CDS: -5.92 Total: 5.70 kcal Atomic # 6 Polarization: -26.02 SS G_CDS: -5.29 Total: -31.31 kcal Atomic # 7 Polarization: -31.28 SS G_CDS: 0.55 Total: -30.73 kcal Atomic # 14 Polarization: 17.77 SS G_CDS: -5.02 Total: 12.74 kcal Total LS contribution 5.14 Total: 5.14 kcal Total: -27.91 -10.55 -38.45 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241053383.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.820 kcal (2) G-P(sol) polarization free energy of solvation -27.907 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.455 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.365 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds