Wall clock time and date at job start Tue Mar 31 2020 05:16:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47232 * 2 1 4 4 C 1.53002 * 109.47383 * 240.00193 * 2 1 3 5 5 C 1.50704 * 109.47263 * 120.00030 * 2 1 3 6 6 C 1.38408 * 119.92740 * 239.97841 * 5 2 1 7 7 C 1.38362 * 120.29295 * 179.97438 * 6 5 2 8 8 C 1.37956 * 120.14638 * 0.02562 * 7 6 5 9 9 C 1.39590 * 119.84966 * 359.76483 * 8 7 6 10 10 C 1.47968 * 120.14560 * 180.23019 * 9 8 7 11 11 C 1.39899 * 119.44817 * 359.97438 * 10 9 8 12 12 C 1.36613 * 119.46735 * 179.74485 * 11 10 9 13 13 C 1.41310 * 118.40802 * 0.51800 * 12 11 10 14 14 C 1.41050 * 120.54829 * 179.70673 * 13 12 11 15 15 H 1.08004 * 119.99881 * 155.69743 * 14 13 12 16 16 C 1.40032 * 120.00244 * 335.69268 * 14 13 12 17 17 N 1.30787 * 119.99659 * 343.21400 * 16 14 13 18 18 Si 1.86798 * 120.00086 * 163.21121 * 16 14 13 19 19 H 1.48508 * 109.46595 * 90.00279 * 18 16 14 20 20 H 1.48497 * 109.47221 * 210.00150 * 18 16 14 21 21 H 1.48494 * 109.47133 * 330.00549 * 18 16 14 22 22 C 1.40941 * 118.89427 * 359.72415 * 13 12 11 23 23 N 1.31263 * 120.40348 * 0.02562 * 22 13 12 24 24 C 1.37911 * 119.92437 * 60.00010 * 5 2 1 25 25 H 1.08993 * 109.47348 * 300.00187 * 1 2 3 26 26 H 1.09005 * 109.46708 * 60.00102 * 1 2 3 27 27 H 1.08995 * 109.47123 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47266 * 179.97438 * 3 2 1 29 29 H 1.09005 * 109.47191 * 299.99603 * 3 2 1 30 30 H 1.08997 * 109.47449 * 60.00022 * 3 2 1 31 31 H 1.09008 * 109.46886 * 300.00198 * 4 2 1 32 32 H 1.08996 * 109.47416 * 59.99939 * 4 2 1 33 33 H 1.08995 * 109.47442 * 180.02562 * 4 2 1 34 34 H 1.08001 * 119.85328 * 0.02562 * 6 5 2 35 35 H 1.08005 * 119.92755 * 179.97438 * 7 6 5 36 36 H 1.07999 * 120.07456 * 180.02562 * 8 7 6 37 37 H 1.07999 * 120.26594 * 359.97438 * 11 10 9 38 38 H 1.07998 * 120.79472 * 180.22361 * 12 11 10 39 39 H 0.97006 * 119.99647 * 179.97438 * 17 16 14 40 40 H 1.07998 * 119.80154 * 179.97438 * 22 13 12 41 41 H 1.08004 * 120.07860 * 359.97373 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2305 6 6 2.8284 -0.0365 2.1403 7 6 3.2933 -0.6812 3.2728 8 6 2.9662 -2.0017 3.5018 9 6 2.1601 -2.6859 2.5904 10 6 1.8010 -4.1009 2.8322 11 6 2.2763 -4.7447 3.9797 12 6 1.9407 -6.0495 4.2059 13 6 1.1271 -6.7086 3.2570 14 6 0.7584 -8.0574 3.4424 15 1 -0.1355 -8.4421 2.9741 16 6 1.5515 -8.8977 4.2335 17 7 2.7780 -8.5523 4.5282 18 14 0.8576 -10.5119 4.8679 19 1 1.1337 -11.5898 3.8843 20 1 1.4967 -10.8497 6.1650 21 1 -0.6091 -10.3793 5.0583 22 6 0.6906 -5.9960 2.1221 23 7 1.0362 -4.7411 1.9521 24 6 1.6982 -2.0308 1.4472 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9563 0.8899 31 1 1.6766 -1.7489 -1.2493 32 1 1.6768 -0.2074 -2.1392 33 1 3.1300 -0.7216 -1.2490 34 1 3.0870 0.9975 1.9659 35 1 3.9144 -0.1497 3.9787 36 1 3.3294 -2.5037 4.3864 37 1 2.9004 -4.2134 4.6829 38 1 2.2927 -6.5662 5.0865 39 1 3.3273 -9.1342 5.0766 40 1 0.0686 -6.4855 1.3873 41 1 1.0770 -2.5556 0.7365 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241296905.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:03 Heat of formation + Delta-G solvation = 24.322445 kcal Electronic energy + Delta-G solvation = -20880.563020 eV Core-core repulsion = 17916.685341 eV Total energy + Delta-G solvation = -2963.877679 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.51288 -38.24077 -35.98224 -34.25332 -31.48871 -30.84042 -29.75677 -28.88151 -27.31628 -27.10497 -25.37804 -22.87206 -22.51237 -21.14073 -20.47651 -18.61684 -17.52757 -16.64384 -15.58712 -15.10599 -14.88919 -14.50251 -14.13624 -14.10547 -13.79573 -13.31934 -13.14219 -12.84798 -12.74158 -12.32238 -12.08920 -11.82005 -11.79452 -11.66386 -11.56929 -11.43666 -11.28358 -11.25551 -10.98970 -10.81663 -10.72151 -10.23612 -10.17633 -9.91152 -9.54980 -8.65024 -8.36283 -8.20803 -8.10183 -7.29661 -6.99872 -4.58125 1.62160 1.96473 2.67165 2.91488 2.93452 2.97672 3.15743 3.71822 4.23040 4.63773 4.79638 4.93585 5.12945 5.35847 5.45799 5.47453 5.62216 5.62476 5.70928 5.72552 5.84900 5.85247 5.93831 6.01354 6.06595 6.10343 6.14253 6.17997 6.40242 6.43650 6.48379 6.55335 6.64191 6.72884 6.81663 6.89001 7.01352 7.11409 7.16834 7.33731 7.51905 7.70359 7.76751 7.86776 8.29225 8.48806 8.58972 9.53691 9.85876 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.033973 B = 0.003548 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.989627 B = 7889.046720 C = 8455.517158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.027 4.027 3 C -0.140 4.140 4 C -0.138 4.138 5 C -0.074 4.074 6 C -0.152 4.152 7 C -0.117 4.117 8 C -0.139 4.139 9 C 0.022 3.978 10 C -0.008 4.008 11 C -0.121 4.121 12 C -0.144 4.144 13 C 0.069 3.931 14 C -0.434 4.434 15 H 0.087 0.913 16 C 0.072 3.928 17 N -0.777 5.777 18 Si 0.916 3.084 19 H -0.266 1.266 20 H -0.273 1.273 21 H -0.257 1.257 22 C -0.018 4.018 23 N -0.447 5.447 24 C -0.107 4.107 25 H 0.054 0.946 26 H 0.052 0.948 27 H 0.061 0.939 28 H 0.056 0.944 29 H 0.052 0.948 30 H 0.056 0.944 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.118 0.882 37 H 0.101 0.899 38 H 0.127 0.873 39 H 0.287 0.713 40 H 0.129 0.871 41 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.069 11.075 -3.408 11.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.027 4.027 3 C -0.197 4.197 4 C -0.195 4.195 5 C -0.074 4.074 6 C -0.170 4.170 7 C -0.135 4.135 8 C -0.159 4.159 9 C 0.021 3.979 10 C -0.142 4.142 11 C -0.142 4.142 12 C -0.169 4.169 13 C 0.064 3.936 14 C -0.463 4.463 15 H 0.105 0.895 16 C -0.149 4.149 17 N -0.400 5.400 18 Si 0.739 3.261 19 H -0.191 1.191 20 H -0.198 1.198 21 H -0.181 1.181 22 C -0.183 4.183 23 N -0.154 5.154 24 C -0.125 4.125 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.075 0.925 29 H 0.071 0.929 30 H 0.075 0.925 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.133 0.867 35 H 0.130 0.870 36 H 0.136 0.864 37 H 0.119 0.881 38 H 0.144 0.856 39 H 0.098 0.902 40 H 0.146 0.854 41 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -0.119 11.436 -4.005 12.118 hybrid contribution 0.245 -1.362 1.211 1.839 sum 0.125 10.074 -2.794 10.455 Atomic orbital electron populations 1.21881 0.93996 1.02407 1.01223 1.19440 0.95534 0.94593 0.93125 1.21932 1.01014 0.95372 1.01392 1.21885 1.01066 1.00670 0.95913 1.19652 0.98098 0.94101 0.95563 1.20963 1.00941 0.99651 0.95471 1.20876 1.00420 0.94717 0.97495 1.21174 1.00219 0.94554 0.99905 1.18677 0.94109 0.91913 0.93233 1.18810 1.06274 0.92981 0.96114 1.21321 0.99760 0.95707 0.97382 1.21337 1.02436 0.92879 1.00290 1.18613 0.90513 0.93908 0.90531 1.19676 1.08068 0.94080 1.24479 0.89516 1.26094 0.93947 1.00873 0.93974 1.69782 1.06293 1.37220 1.26717 0.86175 0.80671 0.80384 0.78877 1.19103 1.19810 1.18099 1.22449 1.07141 0.90821 0.97879 1.66912 1.09481 1.10024 1.29032 1.21049 1.00616 0.93266 0.97595 0.92724 0.92849 0.92029 0.92461 0.92862 0.92472 0.92022 0.92843 0.92709 0.86719 0.86992 0.86439 0.88087 0.85557 0.90196 0.85360 0.85551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.69 8.28 37.16 0.31 -1.38 16 2 C -0.03 -0.34 0.85 -155.66 -0.13 -0.48 16 3 C -0.14 -1.48 7.13 37.16 0.26 -1.22 16 4 C -0.14 -1.71 8.29 37.16 0.31 -1.40 16 5 C -0.07 -1.17 4.76 -104.68 -0.50 -1.67 16 6 C -0.15 -2.27 8.98 -39.47 -0.35 -2.62 16 7 C -0.12 -1.82 10.03 -39.64 -0.40 -2.22 16 8 C -0.14 -2.53 9.42 -39.18 -0.37 -2.89 16 9 C 0.02 0.44 5.88 -104.89 -0.62 -0.17 16 10 C -0.01 -0.19 6.74 -82.74 -0.56 -0.75 16 11 C -0.12 -2.86 9.38 -39.55 -0.37 -3.23 16 12 C -0.14 -3.64 8.74 -39.00 -0.34 -3.98 16 13 C 0.07 1.78 5.59 -106.64 -0.60 1.18 16 14 C -0.43 -10.76 9.07 -37.84 -0.34 -11.10 16 15 H 0.09 2.02 7.90 -52.48 -0.41 1.60 16 16 C 0.07 1.67 5.18 -17.32 -0.09 1.58 16 17 N -0.78 -18.77 10.91 55.55 0.61 -18.17 16 18 Si 0.92 17.25 29.59 -169.99 -5.03 12.22 16 19 H -0.27 -4.96 7.11 56.52 0.40 -4.55 16 20 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 21 H -0.26 -4.82 7.11 56.52 0.40 -4.42 16 22 C -0.02 -0.44 10.97 -16.77 -0.18 -0.62 16 23 N -0.45 -10.99 9.39 -9.10 -0.09 -11.07 16 24 C -0.11 -2.00 8.23 -39.18 -0.32 -2.33 16 25 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 26 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 27 H 0.06 0.82 7.38 -51.93 -0.38 0.44 16 28 H 0.06 0.59 7.51 -51.93 -0.39 0.20 16 29 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.59 7.51 -51.93 -0.39 0.20 16 31 H 0.06 0.83 7.38 -51.92 -0.38 0.45 16 32 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 33 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 34 H 0.11 1.43 5.87 -52.49 -0.31 1.12 16 35 H 0.11 1.43 8.06 -52.48 -0.42 1.00 16 36 H 0.12 2.01 6.15 -52.49 -0.32 1.69 16 37 H 0.10 2.10 6.15 -52.49 -0.32 1.78 16 38 H 0.13 3.21 6.20 -52.49 -0.33 2.88 16 39 H 0.29 6.24 8.30 -40.82 -0.34 5.90 16 40 H 0.13 2.91 8.06 -52.49 -0.42 2.48 16 41 H 0.13 2.47 6.56 -52.48 -0.34 2.12 16 LS Contribution 332.46 15.07 5.01 5.01 Total: -1.00 -26.73 332.46 -9.47 -36.21 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -5.68 Total: 9.09 kcal Atomic # 6 Polarization: -29.00 SS G_CDS: -4.29 Total: -33.29 kcal Atomic # 7 Polarization: -29.76 SS G_CDS: 0.52 Total: -29.24 kcal Atomic # 14 Polarization: 17.25 SS G_CDS: -5.03 Total: 12.22 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -26.73 -9.47 -36.21 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241296905.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.528 kcal (2) G-P(sol) polarization free energy of solvation -26.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.793 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.470 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.205 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds