Wall clock time and date at job start Tue Mar 31 2020 05:16:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52996 * 109.47232 * 2 1 4 4 C 1.53002 * 109.47383 * 240.00193 * 2 1 3 5 5 C 1.50704 * 109.47263 * 120.00030 * 2 1 3 6 6 C 1.38408 * 119.92740 * 239.97841 * 5 2 1 7 7 C 1.38362 * 120.29295 * 179.97438 * 6 5 2 8 8 C 1.37956 * 120.14638 * 0.02562 * 7 6 5 9 9 C 1.39590 * 119.84966 * 359.76483 * 8 7 6 10 10 C 1.47968 * 120.14560 * 180.23019 * 9 8 7 11 11 C 1.39899 * 119.44817 * 359.97438 * 10 9 8 12 12 C 1.36613 * 119.46735 * 179.74485 * 11 10 9 13 13 C 1.41310 * 118.40802 * 0.51800 * 12 11 10 14 14 C 1.41050 * 120.54829 * 179.70673 * 13 12 11 15 15 H 1.08004 * 119.99881 * 155.69743 * 14 13 12 16 16 C 1.40032 * 120.00244 * 335.69268 * 14 13 12 17 17 N 1.30787 * 119.99659 * 343.21400 * 16 14 13 18 18 Si 1.86798 * 120.00086 * 163.21121 * 16 14 13 19 19 H 1.48508 * 109.46595 * 90.00279 * 18 16 14 20 20 H 1.48497 * 109.47221 * 210.00150 * 18 16 14 21 21 H 1.48494 * 109.47133 * 330.00549 * 18 16 14 22 22 C 1.40941 * 118.89427 * 359.72415 * 13 12 11 23 23 N 1.31263 * 120.40348 * 0.02562 * 22 13 12 24 24 C 1.37911 * 119.92437 * 60.00010 * 5 2 1 25 25 H 1.08993 * 109.47348 * 300.00187 * 1 2 3 26 26 H 1.09005 * 109.46708 * 60.00102 * 1 2 3 27 27 H 1.08995 * 109.47123 * 179.97438 * 1 2 3 28 28 H 1.09002 * 109.47266 * 179.97438 * 3 2 1 29 29 H 1.09005 * 109.47191 * 299.99603 * 3 2 1 30 30 H 1.08997 * 109.47449 * 60.00022 * 3 2 1 31 31 H 1.09008 * 109.46886 * 300.00198 * 4 2 1 32 32 H 1.08996 * 109.47416 * 59.99939 * 4 2 1 33 33 H 1.08995 * 109.47442 * 180.02562 * 4 2 1 34 34 H 1.08001 * 119.85328 * 0.02562 * 6 5 2 35 35 H 1.08005 * 119.92755 * 179.97438 * 7 6 5 36 36 H 1.07999 * 120.07456 * 180.02562 * 8 7 6 37 37 H 1.07999 * 120.26594 * 359.97438 * 11 10 9 38 38 H 1.07998 * 120.79472 * 180.22361 * 12 11 10 39 39 H 0.97006 * 119.99647 * 179.97438 * 17 16 14 40 40 H 1.07998 * 119.80154 * 179.97438 * 22 13 12 41 41 H 1.08004 * 120.07860 * 359.97373 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0323 -0.7104 1.2305 6 6 2.8284 -0.0365 2.1403 7 6 3.2933 -0.6812 3.2728 8 6 2.9662 -2.0017 3.5018 9 6 2.1601 -2.6859 2.5904 10 6 1.8010 -4.1009 2.8322 11 6 2.2763 -4.7447 3.9797 12 6 1.9407 -6.0495 4.2059 13 6 1.1271 -6.7086 3.2570 14 6 0.7584 -8.0574 3.4424 15 1 -0.1355 -8.4421 2.9741 16 6 1.5515 -8.8977 4.2335 17 7 2.7780 -8.5523 4.5282 18 14 0.8576 -10.5119 4.8679 19 1 1.1337 -11.5898 3.8843 20 1 1.4967 -10.8497 6.1650 21 1 -0.6091 -10.3793 5.0583 22 6 0.6906 -5.9960 2.1221 23 7 1.0362 -4.7411 1.9521 24 6 1.6982 -2.0308 1.4472 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5139 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9563 0.8899 31 1 1.6766 -1.7489 -1.2493 32 1 1.6768 -0.2074 -2.1392 33 1 3.1300 -0.7216 -1.2490 34 1 3.0870 0.9975 1.9659 35 1 3.9144 -0.1497 3.9787 36 1 3.3294 -2.5037 4.3864 37 1 2.9004 -4.2134 4.6829 38 1 2.2927 -6.5662 5.0865 39 1 3.3273 -9.1342 5.0766 40 1 0.0686 -6.4855 1.3873 41 1 1.0770 -2.5556 0.7365 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241296905.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:02 Heat of formation + Delta-G solvation = 13.312300 kcal Electronic energy + Delta-G solvation = -20881.040456 eV Core-core repulsion = 17916.685341 eV Total energy + Delta-G solvation = -2964.355114 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.91906 -39.90755 -37.20961 -36.01196 -33.07806 -32.68291 -31.20268 -30.37962 -28.36668 -28.08695 -27.04761 -24.37522 -24.13367 -22.76601 -22.00635 -19.86377 -19.36850 -18.01515 -17.26418 -16.69936 -16.45018 -15.85769 -15.47577 -15.34678 -15.11061 -14.73588 -14.55117 -14.34168 -14.24035 -13.63949 -13.57161 -13.48712 -13.22293 -12.93903 -12.82445 -12.80901 -12.51506 -12.49513 -12.30474 -12.18404 -11.79476 -11.74195 -11.44871 -11.28306 -11.26050 -10.30716 -10.22744 -9.97822 -9.52514 -9.00793 -8.75243 -6.46384 0.09141 0.62556 0.95418 1.14204 1.37569 1.50831 1.57413 2.14116 2.60239 3.07173 3.71995 3.73000 3.77477 3.92229 4.17767 4.17944 4.32629 4.42985 4.45615 4.49489 4.66422 4.72834 4.78003 4.80000 4.87976 4.93470 4.96699 5.02925 5.06944 5.09092 5.13838 5.21677 5.25606 5.28691 5.38685 5.43867 5.46217 5.60457 5.75391 5.78791 5.84359 5.95799 6.05377 6.27250 6.41549 6.64055 6.70941 7.64673 8.13315 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.033973 B = 0.003548 C = 0.003311 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 823.989627 B = 7889.046720 C = 8455.517158 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.029 4.029 3 C -0.137 4.137 4 C -0.137 4.137 5 C -0.074 4.074 6 C -0.138 4.138 7 C -0.112 4.112 8 C -0.146 4.146 9 C -0.019 4.019 10 C -0.012 4.012 11 C -0.129 4.129 12 C -0.161 4.161 13 C 0.042 3.958 14 C -0.466 4.466 15 H 0.091 0.909 16 C 0.034 3.966 17 N -0.809 5.809 18 Si 0.992 3.008 19 H -0.259 1.259 20 H -0.264 1.264 21 H -0.255 1.255 22 C -0.039 4.039 23 N -0.461 5.461 24 C -0.117 4.117 25 H 0.054 0.946 26 H 0.076 0.924 27 H 0.038 0.962 28 H 0.063 0.937 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.038 0.962 32 H 0.076 0.924 33 H 0.053 0.947 34 H 0.152 0.848 35 H 0.149 0.851 36 H 0.122 0.878 37 H 0.125 0.875 38 H 0.119 0.881 39 H 0.296 0.704 40 H 0.138 0.862 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.571 13.388 -3.360 13.815 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.029 4.029 3 C -0.194 4.194 4 C -0.194 4.194 5 C -0.074 4.074 6 C -0.156 4.156 7 C -0.130 4.130 8 C -0.165 4.165 9 C -0.019 4.019 10 C -0.147 4.147 11 C -0.149 4.149 12 C -0.186 4.186 13 C 0.038 3.962 14 C -0.494 4.494 15 H 0.109 0.891 16 C -0.184 4.184 17 N -0.432 5.432 18 Si 0.812 3.188 19 H -0.183 1.183 20 H -0.188 1.188 21 H -0.179 1.179 22 C -0.203 4.203 23 N -0.168 5.168 24 C -0.136 4.136 25 H 0.073 0.927 26 H 0.095 0.905 27 H 0.057 0.943 28 H 0.082 0.918 29 H 0.090 0.910 30 H 0.082 0.918 31 H 0.057 0.943 32 H 0.095 0.905 33 H 0.072 0.928 34 H 0.169 0.831 35 H 0.167 0.833 36 H 0.140 0.860 37 H 0.143 0.857 38 H 0.137 0.863 39 H 0.107 0.893 40 H 0.156 0.844 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 0.518 13.756 -3.973 14.327 hybrid contribution 0.113 -1.834 1.122 2.153 sum 0.631 11.922 -2.850 12.274 Atomic orbital electron populations 1.21869 0.93801 1.01329 1.02377 1.19544 0.95719 0.95989 0.91617 1.21915 1.01391 0.93303 1.02764 1.21875 1.00958 0.99685 0.96905 1.20022 0.97518 0.92931 0.96966 1.21450 0.98828 1.01087 0.94254 1.21294 0.99903 0.93575 0.98224 1.21337 0.99791 0.95833 0.99536 1.18761 0.96946 0.90827 0.95401 1.19427 1.05053 0.94622 0.95601 1.21583 0.99947 0.95353 0.97995 1.21387 1.03274 0.93684 1.00279 1.18909 0.91357 0.94885 0.91084 1.19950 1.08924 0.94292 1.26265 0.89070 1.26984 0.93811 1.04278 0.93317 1.69817 1.07414 1.38898 1.27109 0.85040 0.79763 0.75569 0.78464 1.18342 1.18793 1.17899 1.22673 1.08020 0.91306 0.98291 1.66971 1.10180 1.10036 1.29620 1.21008 1.00937 0.94764 0.96919 0.92720 0.90522 0.94279 0.91834 0.90981 0.91769 0.94312 0.90495 0.92812 0.83089 0.83323 0.86008 0.85696 0.86279 0.89263 0.84420 0.87509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.13 8.28 71.98 0.60 -2.53 16 2 C -0.03 -0.67 0.85 -52.93 -0.05 -0.71 16 3 C -0.14 -2.30 7.13 71.98 0.51 -1.79 16 4 C -0.14 -3.18 8.29 71.98 0.60 -2.58 16 5 C -0.07 -2.22 4.76 -19.90 -0.09 -2.32 16 6 C -0.14 -3.62 8.98 22.34 0.20 -3.42 16 7 C -0.11 -3.12 10.03 22.23 0.22 -2.89 16 8 C -0.15 -5.12 9.42 22.53 0.21 -4.91 16 9 C -0.02 -0.78 5.88 -20.04 -0.12 -0.90 16 10 C -0.01 -0.59 6.74 41.95 0.28 -0.31 16 11 C -0.13 -6.29 9.38 22.29 0.21 -6.08 16 12 C -0.16 -8.51 8.74 22.65 0.20 -8.31 16 13 C 0.04 2.29 5.59 -21.17 -0.12 2.17 16 14 C -0.47 -24.04 9.07 23.40 0.21 -23.83 16 15 H 0.09 4.43 7.90 -2.91 -0.02 4.40 16 16 C 0.03 1.61 5.18 85.28 0.44 2.05 16 17 N -0.81 -40.07 10.91 21.84 0.24 -39.83 16 18 Si 0.99 35.51 29.59 68.60 2.03 37.54 16 19 H -0.26 -8.92 7.11 99.48 0.71 -8.21 16 20 H -0.26 -8.94 7.11 99.48 0.71 -8.24 16 21 H -0.26 -8.98 7.11 99.48 0.71 -8.27 16 22 C -0.04 -2.06 10.97 85.44 0.94 -1.12 16 23 N -0.46 -23.86 9.39 -182.71 -1.72 -25.58 16 24 C -0.12 -4.48 8.23 22.53 0.19 -4.30 16 25 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 26 H 0.08 1.38 8.14 -2.38 -0.02 1.36 16 27 H 0.04 1.05 7.38 -2.39 -0.02 1.04 16 28 H 0.06 1.01 7.51 -2.39 -0.02 0.99 16 29 H 0.07 0.98 8.14 -2.38 -0.02 0.96 16 30 H 0.06 1.01 7.51 -2.39 -0.02 0.99 16 31 H 0.04 1.06 7.38 -2.38 -0.02 1.04 16 32 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 33 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 34 H 0.15 2.91 5.87 -2.91 -0.02 2.89 16 35 H 0.15 3.05 8.06 -2.91 -0.02 3.03 16 36 H 0.12 4.06 6.15 -2.91 -0.02 4.04 16 37 H 0.13 5.29 6.15 -2.91 -0.02 5.27 16 38 H 0.12 6.35 6.20 -2.91 -0.02 6.33 16 39 H 0.30 13.07 8.30 -92.70 -0.77 12.30 16 40 H 0.14 6.66 8.06 -2.91 -0.02 6.64 16 41 H 0.11 4.42 6.56 -2.91 -0.02 4.40 16 Total: -1.00 -60.87 332.46 6.01 -54.86 By element: Atomic # 1 Polarization: 33.76 SS G_CDS: 1.02 Total: 34.79 kcal Atomic # 6 Polarization: -66.21 SS G_CDS: 4.43 Total: -61.78 kcal Atomic # 7 Polarization: -63.93 SS G_CDS: -1.48 Total: -65.41 kcal Atomic # 14 Polarization: 35.51 SS G_CDS: 2.03 Total: 37.54 kcal Total: -60.87 6.01 -54.86 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241296905.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.169 kcal (2) G-P(sol) polarization free energy of solvation -60.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.009 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.857 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.312 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds