Wall clock time and date at job start Tue Mar 31 2020 05:16:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.53008 * 109.47094 * 2 1 4 4 C 1.52997 * 109.47108 * 240.00038 * 2 1 3 5 5 C 1.50691 * 109.47253 * 119.99727 * 2 1 3 6 6 C 1.38426 * 119.92506 * 0.02562 * 5 2 1 7 7 C 1.38380 * 120.30970 * 180.02562 * 6 5 2 8 8 C 1.37942 * 120.14694 * 359.97222 * 7 6 5 9 9 C 1.39658 * 119.84921 * 0.02562 * 8 7 6 10 10 C 1.47817 * 120.14750 * 180.02562 * 9 8 7 11 11 N 1.32580 * 119.98896 * 136.38331 * 10 9 8 12 12 C 1.31743 * 121.72361 * 179.97438 * 11 10 9 13 13 C 1.38871 * 121.50257 * 0.02562 * 12 11 10 14 14 C 1.36884 * 119.79762 * 0.27203 * 13 12 11 15 15 C 1.41118 * 118.39501 * 359.48887 * 14 13 12 16 16 C 1.40894 * 120.71749 * 180.23628 * 15 14 13 17 17 H 1.07995 * 119.99434 * 151.80556 * 16 15 14 18 18 C 1.40065 * 119.99970 * 331.80880 * 16 15 14 19 19 N 1.30774 * 120.00436 * 348.07437 * 18 16 15 20 20 Si 1.86797 * 119.99976 * 168.07580 * 18 16 15 21 21 H 1.48497 * 109.47316 * 89.99847 * 20 18 16 22 22 H 1.48499 * 109.47453 * 210.00100 * 20 18 16 23 23 H 1.48504 * 109.47315 * 330.00139 * 20 18 16 24 24 C 1.37900 * 119.92717 * 180.27576 * 5 2 1 25 25 H 1.09004 * 109.46806 * 300.00033 * 1 2 3 26 26 H 1.09005 * 109.47124 * 59.99546 * 1 2 3 27 27 H 1.08990 * 109.47153 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47144 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47044 * 300.00304 * 3 2 1 30 30 H 1.08994 * 109.46853 * 60.00018 * 3 2 1 31 31 H 1.09001 * 109.47150 * 300.00106 * 4 2 1 32 32 H 1.09005 * 109.46788 * 60.00210 * 4 2 1 33 33 H 1.08998 * 109.47154 * 179.97438 * 4 2 1 34 34 H 1.08002 * 119.84203 * 0.02562 * 6 5 2 35 35 H 1.07988 * 119.92641 * 179.97438 * 7 6 5 36 36 H 1.08002 * 120.07430 * 180.02562 * 8 7 6 37 37 H 1.07996 * 119.24856 * 180.02562 * 12 11 10 38 38 H 1.08007 * 120.09862 * 180.02562 * 13 12 11 39 39 H 1.08000 * 120.79627 * 179.70758 * 14 13 12 40 40 H 0.96993 * 119.99963 * 179.97438 * 19 18 16 41 41 H 1.08004 * 120.07507 * 0.02562 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 2.0324 -0.7103 1.2304 6 6 1.1315 -1.2362 2.1404 7 6 1.5840 -1.8896 3.2732 8 6 2.9378 -2.0214 3.5026 9 6 3.8524 -1.4933 2.5887 10 6 5.3045 -1.6313 2.8277 11 7 6.1108 -1.9704 1.8314 12 6 7.4099 -2.1025 2.0059 13 6 8.0007 -1.8932 3.2451 14 6 7.2252 -1.5466 4.3185 15 6 5.8351 -1.4017 4.1232 16 6 4.9917 -1.0416 5.1929 17 1 4.0755 -0.5033 5.0004 18 6 5.3417 -1.3817 6.5058 19 7 6.3163 -2.2256 6.7250 20 14 4.4164 -0.6297 7.9437 21 1 3.2590 -1.4920 8.2929 22 1 5.3238 -0.5213 9.1141 23 1 3.9305 0.7222 7.5671 24 6 3.3885 -0.8304 1.4500 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6767 1.9564 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2492 32 1 1.6767 -0.2073 -2.1392 33 1 3.1300 -0.7208 -1.2495 34 1 0.0705 -1.1361 1.9653 35 1 0.8757 -2.2971 3.9791 36 1 3.2897 -2.5319 4.3869 37 1 8.0296 -2.3799 1.1660 38 1 9.0683 -2.0073 3.3625 39 1 7.6670 -1.3845 5.2906 40 1 6.5589 -2.4608 7.6342 41 1 4.0903 -0.4157 0.7415 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241296931.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:05 Heat of formation + Delta-G solvation = 15.264329 kcal Electronic energy + Delta-G solvation = -21578.232233 eV Core-core repulsion = 18613.961765 eV Total energy + Delta-G solvation = -2964.270468 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.90986 -39.85547 -37.08548 -35.99493 -33.27526 -32.48540 -31.10281 -30.04742 -28.19299 -28.06397 -27.42947 -24.26228 -23.88729 -23.01555 -21.89046 -19.80109 -19.29358 -17.78428 -17.42405 -16.58206 -16.40758 -15.76392 -15.65420 -15.45011 -15.06327 -14.78010 -14.41636 -14.21043 -14.13691 -13.75502 -13.42663 -13.30347 -13.20038 -12.91467 -12.79230 -12.77029 -12.49721 -12.44893 -12.40321 -12.17252 -11.78763 -11.69376 -11.38854 -11.26657 -11.19589 -10.33246 -9.95537 -9.85889 -9.41880 -9.04995 -8.68146 -6.42429 0.27423 0.68458 0.88813 1.20659 1.36284 1.46742 1.51328 2.15588 2.70806 3.02732 3.67193 3.75308 3.86942 4.01122 4.20079 4.32416 4.38328 4.46429 4.47936 4.60067 4.70468 4.74014 4.80303 4.81936 4.87727 4.95290 5.00284 5.05513 5.08250 5.13915 5.21412 5.21669 5.26731 5.33029 5.43823 5.47402 5.49048 5.73057 5.78311 5.83210 5.92713 6.02370 6.07478 6.30151 6.49936 6.71890 6.78684 7.68369 8.22154 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016460 B = 0.005949 C = 0.004737 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1700.715191 B = 4705.890322 C = 5909.052465 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.027 4.027 3 C -0.136 4.136 4 C -0.135 4.135 5 C -0.078 4.078 6 C -0.131 4.131 7 C -0.125 4.125 8 C -0.117 4.117 9 C -0.010 4.010 10 C 0.000 4.000 11 N -0.471 5.471 12 C -0.041 4.041 13 C -0.150 4.150 14 C -0.152 4.152 15 C 0.054 3.946 16 C -0.456 4.456 17 H 0.083 0.917 18 C 0.037 3.963 19 N -0.818 5.818 20 Si 0.978 3.022 21 H -0.258 1.258 22 H -0.264 1.264 23 H -0.260 1.260 24 C -0.111 4.111 25 H 0.061 0.939 26 H 0.073 0.927 27 H 0.062 0.938 28 H 0.038 0.962 29 H 0.078 0.922 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.077 0.923 33 H 0.039 0.961 34 H 0.152 0.848 35 H 0.141 0.859 36 H 0.107 0.893 37 H 0.152 0.848 38 H 0.130 0.870 39 H 0.118 0.882 40 H 0.292 0.708 41 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.059 4.008 -6.270 12.512 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.027 4.027 3 C -0.193 4.193 4 C -0.192 4.192 5 C -0.078 4.078 6 C -0.149 4.149 7 C -0.143 4.143 8 C -0.136 4.136 9 C -0.010 4.010 10 C -0.138 4.138 11 N -0.179 5.179 12 C -0.201 4.201 13 C -0.170 4.170 14 C -0.178 4.178 15 C 0.050 3.950 16 C -0.485 4.485 17 H 0.101 0.899 18 C -0.179 4.179 19 N -0.444 5.444 20 Si 0.798 3.202 21 H -0.182 1.182 22 H -0.188 1.188 23 H -0.184 1.184 24 C -0.130 4.130 25 H 0.080 0.920 26 H 0.092 0.908 27 H 0.081 0.919 28 H 0.058 0.942 29 H 0.096 0.904 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.096 0.904 33 H 0.058 0.942 34 H 0.169 0.831 35 H 0.159 0.841 36 H 0.125 0.875 37 H 0.169 0.831 38 H 0.148 0.852 39 H 0.136 0.864 40 H 0.103 0.897 41 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -10.252 3.730 -6.902 12.910 hybrid contribution 1.039 0.054 1.774 2.056 sum -9.214 3.784 -5.128 11.203 Atomic orbital electron populations 1.21917 0.92325 1.02464 1.02718 1.19528 0.96965 0.94644 0.91551 1.21870 1.00308 0.94789 1.02367 1.21861 1.00375 1.00270 0.96740 1.19957 0.92031 0.98759 0.97065 1.21416 1.00485 0.99091 0.93906 1.21268 0.94386 1.00139 0.98540 1.21341 0.93537 0.99949 0.98763 1.18530 0.90364 0.97180 0.94958 1.20042 0.92719 1.10232 0.90837 1.67112 1.05722 1.10683 1.34398 1.22243 0.90878 1.10020 0.96996 1.21737 1.00475 1.00681 0.94113 1.21486 0.93655 1.04096 0.98610 1.18726 0.93322 0.89931 0.93021 1.19677 1.06534 1.31361 0.90902 0.89923 1.26777 0.95395 0.93034 1.02670 1.69785 1.25364 1.24487 1.24726 0.85239 0.78874 0.79731 0.76311 1.18219 1.18840 1.18353 1.20981 0.95576 0.99984 0.96502 0.91969 0.90819 0.91896 0.94247 0.90352 0.92910 0.92874 0.90406 0.94170 0.83054 0.84141 0.87460 0.83121 0.85198 0.86431 0.89658 0.87962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.54 7.13 71.98 0.51 -2.03 16 2 C -0.03 -0.66 0.85 -52.93 -0.05 -0.71 16 3 C -0.14 -3.26 8.28 71.98 0.60 -2.66 16 4 C -0.14 -3.22 8.29 71.98 0.60 -2.63 16 5 C -0.08 -2.54 4.76 -19.90 -0.09 -2.64 16 6 C -0.13 -3.97 8.98 22.35 0.20 -3.76 16 7 C -0.13 -4.29 10.03 22.23 0.22 -4.07 16 8 C -0.12 -5.06 7.84 22.54 0.18 -4.88 16 9 C -0.01 -0.45 5.26 -20.05 -0.11 -0.55 16 10 C 0.00 -0.01 6.43 42.46 0.27 0.26 16 11 N -0.47 -24.15 10.15 -182.93 -1.86 -26.01 16 12 C -0.04 -1.93 11.16 84.86 0.95 -0.98 16 13 C -0.15 -6.99 10.03 22.10 0.22 -6.77 16 14 C -0.15 -7.98 8.72 22.66 0.20 -7.78 16 15 C 0.05 2.96 5.54 -21.02 -0.12 2.85 16 16 C -0.46 -23.74 6.72 23.36 0.16 -23.58 16 17 H 0.08 4.27 6.47 -2.91 -0.02 4.25 16 18 C 0.04 1.80 5.26 85.29 0.45 2.25 16 19 N -0.82 -40.92 10.90 21.85 0.24 -40.69 16 20 Si 0.98 36.75 29.58 68.60 2.03 38.78 16 21 H -0.26 -9.29 7.11 99.48 0.71 -8.58 16 22 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 23 H -0.26 -9.73 7.11 99.48 0.71 -9.02 16 24 C -0.11 -4.55 8.32 22.54 0.19 -4.36 16 25 H 0.06 1.11 7.51 -2.38 -0.02 1.09 16 26 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 27 H 0.06 1.11 7.50 -2.39 -0.02 1.09 16 28 H 0.04 1.08 7.37 -2.39 -0.02 1.06 16 29 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 30 H 0.05 1.28 8.14 -2.39 -0.02 1.26 16 31 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 32 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 33 H 0.04 1.10 7.40 -2.39 -0.02 1.08 16 34 H 0.15 3.45 5.87 -2.91 -0.02 3.43 16 35 H 0.14 3.92 8.06 -2.92 -0.02 3.89 16 36 H 0.11 5.07 6.74 -2.91 -0.02 5.05 16 37 H 0.15 5.91 8.06 -2.91 -0.02 5.89 16 38 H 0.13 5.07 8.06 -2.91 -0.02 5.04 16 39 H 0.12 6.24 6.32 -2.91 -0.02 6.23 16 40 H 0.29 13.16 8.29 -92.71 -0.77 12.39 16 41 H 0.10 4.31 7.09 -2.91 -0.02 4.29 16 Total: -1.00 -60.80 331.00 5.81 -55.00 By element: Atomic # 1 Polarization: 33.93 SS G_CDS: 1.02 Total: 34.95 kcal Atomic # 6 Polarization: -66.41 SS G_CDS: 4.38 Total: -62.04 kcal Atomic # 7 Polarization: -65.07 SS G_CDS: -1.62 Total: -66.69 kcal Atomic # 14 Polarization: 36.75 SS G_CDS: 2.03 Total: 38.78 kcal Total: -60.80 5.81 -55.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241296931.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.262 kcal (2) G-P(sol) polarization free energy of solvation -60.803 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.459 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.805 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds