Wall clock time and date at job start Tue Mar 31 2020 05:16:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46879 * 2 1 4 4 C 1.53004 * 109.46965 * 240.00500 * 2 1 3 5 5 C 1.50695 * 109.47229 * 120.00323 * 2 1 3 6 6 C 1.38356 * 119.93677 * 239.98242 * 5 2 1 7 7 C 1.38313 * 120.25077 * 180.02562 * 6 5 2 8 8 C 1.38025 * 120.12669 * 359.73774 * 7 6 5 9 9 C 1.39362 * 119.87211 * 0.50959 * 8 7 6 10 10 C 1.48318 * 120.12465 * 179.76579 * 9 8 7 11 11 C 1.39898 * 119.60509 * 348.88869 * 10 9 8 12 12 C 1.38695 * 119.45960 * 179.97438 * 11 10 9 13 13 C 1.38290 * 118.69056 * 359.72700 * 12 11 10 14 14 C 1.40684 * 119.18417 * 0.53542 * 13 12 11 15 15 C 1.41385 * 119.76466 * 179.72587 * 14 13 12 16 16 H 1.08000 * 120.00039 * 7.81615 * 15 14 13 17 17 C 1.40019 * 119.99881 * 187.80889 * 15 14 13 18 18 N 1.30754 * 119.99931 * 8.05733 * 17 15 14 19 19 Si 1.86798 * 120.00084 * 187.77882 * 17 15 14 20 20 H 1.48504 * 109.46976 * 265.31118 * 19 17 15 21 21 H 1.48504 * 109.46906 * 25.30689 * 19 17 15 22 22 H 1.48496 * 109.47454 * 145.30778 * 19 17 15 23 23 N 1.32216 * 119.60252 * 168.86420 * 10 9 8 24 24 C 1.37990 * 119.93725 * 59.99813 * 5 2 1 25 25 H 1.09000 * 109.47256 * 299.99578 * 1 2 3 26 26 H 1.09000 * 109.46817 * 59.99834 * 1 2 3 27 27 H 1.09002 * 109.46556 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46899 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47623 * 300.00277 * 3 2 1 30 30 H 1.09000 * 109.46832 * 60.00162 * 3 2 1 31 31 H 1.09000 * 109.46929 * 299.99623 * 4 2 1 32 32 H 1.09000 * 109.47132 * 59.99971 * 4 2 1 33 33 H 1.09001 * 109.46537 * 179.97438 * 4 2 1 34 34 H 1.07997 * 119.87285 * 0.03804 * 6 5 2 35 35 H 1.07998 * 119.93138 * 179.97438 * 7 6 5 36 36 H 1.08005 * 120.06308 * 180.27844 * 8 7 6 37 37 H 1.07992 * 120.27193 * 359.97438 * 11 10 9 38 38 H 1.08001 * 120.65335 * 180.02562 * 12 11 10 39 39 H 1.07997 * 120.40957 * 180.28134 * 13 12 11 40 40 H 0.97002 * 119.99435 * 179.71890 * 18 17 15 41 41 H 1.07993 * 120.05952 * 359.95706 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 2.8281 -0.0369 2.1401 7 6 3.2931 -0.6828 3.2713 8 6 2.9610 -2.0026 3.5013 9 6 2.1641 -2.6876 2.5858 10 6 1.8081 -4.1074 2.8248 11 6 2.4568 -4.8215 3.8379 12 6 2.1211 -6.1489 4.0592 13 6 1.1445 -6.7273 3.2692 14 6 0.5322 -5.9586 2.2625 15 6 -0.4637 -6.5393 1.4439 16 1 -0.8421 -7.5250 1.6709 17 6 -0.9593 -5.8363 0.3391 18 7 -0.3954 -4.7156 -0.0294 19 14 -2.4214 -6.5034 -0.6131 20 1 -1.9374 -7.2945 -1.7729 21 1 -3.2350 -7.3728 0.2743 22 1 -3.2540 -5.3732 -1.0976 23 7 0.8810 -4.6829 2.0782 24 6 1.6982 -2.0316 1.4474 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7488 -1.2494 32 1 1.6767 -0.2073 -2.1393 33 1 3.1300 -0.7207 -1.2495 34 1 3.0868 0.9971 1.9663 35 1 3.9142 -0.1523 3.9777 36 1 3.3210 -2.5047 4.3872 37 1 3.2128 -4.3431 4.4428 38 1 2.6094 -6.7182 4.8363 39 1 0.8582 -7.7575 3.4205 40 1 -0.7363 -4.2308 -0.7973 41 1 1.0768 -2.5561 0.7369 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241297485.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:08 Heat of formation + Delta-G solvation = 35.599891 kcal Electronic energy + Delta-G solvation = -21601.813437 eV Core-core repulsion = 18638.424785 eV Total energy + Delta-G solvation = -2963.388652 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -39.45162 -38.04295 -35.88890 -33.65201 -31.66856 -30.51368 -29.60440 -28.71860 -27.09209 -26.93552 -25.56256 -22.89507 -22.43960 -21.00027 -20.36447 -18.53007 -17.33539 -16.45812 -15.33797 -14.82477 -14.74623 -14.52636 -14.01021 -13.95381 -13.75802 -13.24825 -13.03723 -12.68105 -12.66844 -12.20115 -12.13696 -11.73662 -11.59874 -11.41640 -11.40205 -11.22941 -11.08207 -10.99922 -10.75243 -10.67601 -10.49698 -10.20196 -10.09471 -9.85815 -9.41940 -8.74649 -8.12712 -8.07395 -7.62524 -7.20191 -6.51685 -4.53187 1.64017 2.02809 2.80094 3.07198 3.07630 3.10334 3.19842 3.92320 4.37219 4.80973 4.90819 5.05750 5.24928 5.35896 5.48405 5.56491 5.72176 5.79057 5.86679 5.89911 5.91056 5.99049 6.04975 6.05758 6.21223 6.23153 6.23468 6.30008 6.47140 6.53358 6.59964 6.61573 6.66033 6.74463 6.85968 6.95836 7.07629 7.20511 7.34171 7.37093 7.58219 7.66809 7.72394 8.00794 8.20516 8.63792 8.88289 10.01404 10.26399 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013814 B = 0.006703 C = 0.004677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.435803 B = 4176.426824 C = 5985.161183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.025 4.025 3 C -0.140 4.140 4 C -0.139 4.139 5 C -0.086 4.086 6 C -0.132 4.132 7 C -0.133 4.133 8 C -0.116 4.116 9 C -0.018 4.018 10 C 0.176 3.824 11 C -0.300 4.300 12 C -0.059 4.059 13 C -0.273 4.273 14 C 0.260 3.740 15 C -0.435 4.435 16 H 0.084 0.916 17 C 0.075 3.925 18 N -0.721 5.721 19 Si 0.905 3.095 20 H -0.270 1.270 21 H -0.261 1.261 22 H -0.275 1.275 23 N -0.470 5.470 24 C -0.074 4.074 25 H 0.051 0.949 26 H 0.051 0.949 27 H 0.067 0.933 28 H 0.055 0.945 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.066 0.934 32 H 0.051 0.949 33 H 0.051 0.949 34 H 0.116 0.884 35 H 0.113 0.887 36 H 0.119 0.881 37 H 0.097 0.903 38 H 0.097 0.903 39 H 0.099 0.901 40 H 0.273 0.727 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.150 9.257 -0.832 9.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.025 4.025 3 C -0.197 4.197 4 C -0.196 4.196 5 C -0.086 4.086 6 C -0.150 4.150 7 C -0.151 4.151 8 C -0.135 4.135 9 C -0.019 4.019 10 C 0.031 3.969 11 C -0.324 4.324 12 C -0.084 4.084 13 C -0.296 4.296 14 C 0.134 3.866 15 C -0.466 4.466 16 H 0.102 0.898 17 C -0.150 4.150 18 N -0.342 5.342 19 Si 0.729 3.271 20 H -0.196 1.196 21 H -0.185 1.185 22 H -0.200 1.200 23 N -0.183 5.183 24 C -0.093 4.093 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.086 0.914 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.085 0.915 32 H 0.070 0.930 33 H 0.071 0.929 34 H 0.134 0.866 35 H 0.131 0.869 36 H 0.137 0.863 37 H 0.115 0.885 38 H 0.115 0.885 39 H 0.117 0.883 40 H 0.084 0.916 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 2.686 9.846 -1.678 10.343 hybrid contribution -0.101 -0.866 0.423 0.969 sum 2.586 8.980 -1.256 9.429 Atomic orbital electron populations 1.21896 0.93846 1.02944 1.00949 1.19418 0.95679 0.94319 0.93070 1.21941 1.00862 0.95558 1.01353 1.21893 1.00772 1.01177 0.95773 1.19754 0.98603 0.94364 0.95892 1.21060 0.99453 0.99535 0.94941 1.20876 1.01456 0.94866 0.97906 1.21220 0.98637 0.94365 0.99319 1.18842 0.96244 0.92443 0.94367 1.19735 0.93530 0.91743 0.91865 1.21207 1.08985 0.96347 1.05814 1.20792 0.96012 0.94402 0.97149 1.21792 1.03920 1.00129 1.03783 1.18495 0.90896 0.87402 0.89758 1.19561 1.17025 1.02330 1.07658 0.89835 1.25983 0.97381 0.94353 0.97247 1.70010 1.33915 1.11103 1.19178 0.86355 0.81286 0.79503 0.79939 1.19552 1.18516 1.20008 1.68629 1.14021 1.11002 1.24621 1.21541 0.97470 0.92896 0.97353 0.92940 0.92980 0.91404 0.92572 0.92854 0.92574 0.91459 0.92952 0.92943 0.86602 0.86893 0.86300 0.88468 0.88511 0.88282 0.91604 0.83042 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.00 8.29 37.16 0.31 -1.69 16 2 C -0.02 -0.36 0.85 -155.66 -0.13 -0.49 16 3 C -0.14 -1.63 7.13 37.16 0.26 -1.36 16 4 C -0.14 -1.97 8.29 37.16 0.31 -1.66 16 5 C -0.09 -1.47 4.76 -104.67 -0.50 -1.96 16 6 C -0.13 -2.04 8.97 -39.51 -0.35 -2.39 16 7 C -0.13 -2.09 10.03 -39.63 -0.40 -2.49 16 8 C -0.12 -2.13 9.39 -39.24 -0.37 -2.50 16 9 C -0.02 -0.39 5.86 -104.90 -0.61 -1.01 16 10 C 0.18 4.34 6.71 -82.93 -0.56 3.78 16 11 C -0.30 -6.88 9.45 -38.79 -0.37 -7.25 16 12 C -0.06 -1.35 10.15 -39.39 -0.40 -1.75 16 13 C -0.27 -6.74 9.83 -38.64 -0.38 -7.12 16 14 C 0.26 7.07 6.51 -85.01 -0.55 6.52 16 15 C -0.43 -11.46 9.13 -37.72 -0.34 -11.80 16 16 H 0.08 2.07 7.86 -52.49 -0.41 1.66 16 17 C 0.08 1.87 5.46 -17.34 -0.09 1.78 16 18 N -0.72 -18.27 11.48 55.55 0.64 -17.64 16 19 Si 0.91 18.30 29.57 -169.99 -5.03 13.27 16 20 H -0.27 -5.38 7.11 56.52 0.40 -4.98 16 21 H -0.26 -5.25 7.11 56.52 0.40 -4.84 16 22 H -0.28 -5.47 7.11 56.52 0.40 -5.06 16 23 N -0.47 -12.73 7.11 -7.67 -0.05 -12.79 16 24 C -0.07 -1.53 8.22 -39.24 -0.32 -1.85 16 25 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 26 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 27 H 0.07 1.12 7.38 -51.93 -0.38 0.74 16 28 H 0.06 0.62 7.51 -51.93 -0.39 0.23 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.63 7.51 -51.93 -0.39 0.24 16 31 H 0.07 1.09 7.38 -51.93 -0.38 0.71 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 34 H 0.12 1.49 5.88 -52.49 -0.31 1.18 16 35 H 0.11 1.44 8.06 -52.49 -0.42 1.01 16 36 H 0.12 2.01 6.32 -52.48 -0.33 1.68 16 37 H 0.10 1.96 6.32 -52.49 -0.33 1.62 16 38 H 0.10 1.86 8.06 -52.49 -0.42 1.43 16 39 H 0.10 2.25 8.06 -52.49 -0.42 1.82 16 40 H 0.27 6.26 8.29 -40.82 -0.34 5.92 16 41 H 0.15 3.47 6.50 -52.49 -0.34 3.12 16 LS Contribution 334.35 15.07 5.04 5.04 Total: -1.00 -28.01 334.35 -9.70 -37.70 By element: Atomic # 1 Polarization: 13.45 SS G_CDS: -5.79 Total: 7.66 kcal Atomic # 6 Polarization: -28.75 SS G_CDS: -4.50 Total: -33.25 kcal Atomic # 7 Polarization: -31.01 SS G_CDS: 0.58 Total: -30.43 kcal Atomic # 14 Polarization: 18.30 SS G_CDS: -5.03 Total: 13.27 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -28.01 -9.70 -37.70 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241297485.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.303 kcal (2) G-P(sol) polarization free energy of solvation -28.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.696 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.703 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.600 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds