Wall clock time and date at job start Tue Mar 31 2020 05:16:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53001 * 109.46879 * 2 1 4 4 C 1.53004 * 109.46965 * 240.00500 * 2 1 3 5 5 C 1.50695 * 109.47229 * 120.00323 * 2 1 3 6 6 C 1.38356 * 119.93677 * 239.98242 * 5 2 1 7 7 C 1.38313 * 120.25077 * 180.02562 * 6 5 2 8 8 C 1.38025 * 120.12669 * 359.73774 * 7 6 5 9 9 C 1.39362 * 119.87211 * 0.50959 * 8 7 6 10 10 C 1.48318 * 120.12465 * 179.76579 * 9 8 7 11 11 C 1.39898 * 119.60509 * 348.88869 * 10 9 8 12 12 C 1.38695 * 119.45960 * 179.97438 * 11 10 9 13 13 C 1.38290 * 118.69056 * 359.72700 * 12 11 10 14 14 C 1.40684 * 119.18417 * 0.53542 * 13 12 11 15 15 C 1.41385 * 119.76466 * 179.72587 * 14 13 12 16 16 H 1.08000 * 120.00039 * 7.81615 * 15 14 13 17 17 C 1.40019 * 119.99881 * 187.80889 * 15 14 13 18 18 N 1.30754 * 119.99931 * 8.05733 * 17 15 14 19 19 Si 1.86798 * 120.00084 * 187.77882 * 17 15 14 20 20 H 1.48504 * 109.46976 * 265.31118 * 19 17 15 21 21 H 1.48504 * 109.46906 * 25.30689 * 19 17 15 22 22 H 1.48496 * 109.47454 * 145.30778 * 19 17 15 23 23 N 1.32216 * 119.60252 * 168.86420 * 10 9 8 24 24 C 1.37990 * 119.93725 * 59.99813 * 5 2 1 25 25 H 1.09000 * 109.47256 * 299.99578 * 1 2 3 26 26 H 1.09000 * 109.46817 * 59.99834 * 1 2 3 27 27 H 1.09002 * 109.46556 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46899 * 179.97438 * 3 2 1 29 29 H 1.09000 * 109.47623 * 300.00277 * 3 2 1 30 30 H 1.09000 * 109.46832 * 60.00162 * 3 2 1 31 31 H 1.09000 * 109.46929 * 299.99623 * 4 2 1 32 32 H 1.09000 * 109.47132 * 59.99971 * 4 2 1 33 33 H 1.09001 * 109.46537 * 179.97438 * 4 2 1 34 34 H 1.07997 * 119.87285 * 0.03804 * 6 5 2 35 35 H 1.07998 * 119.93138 * 179.97438 * 7 6 5 36 36 H 1.08005 * 120.06308 * 180.27844 * 8 7 6 37 37 H 1.07992 * 120.27193 * 359.97438 * 11 10 9 38 38 H 1.08001 * 120.65335 * 180.02562 * 12 11 10 39 39 H 1.07997 * 120.40957 * 180.28134 * 13 12 11 40 40 H 0.97002 * 119.99435 * 179.71890 * 18 17 15 41 41 H 1.07993 * 120.05952 * 359.95706 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 6 2.0324 -0.7104 1.2304 6 6 2.8281 -0.0369 2.1401 7 6 3.2931 -0.6828 3.2713 8 6 2.9610 -2.0026 3.5013 9 6 2.1641 -2.6876 2.5858 10 6 1.8081 -4.1074 2.8248 11 6 2.4568 -4.8215 3.8379 12 6 2.1211 -6.1489 4.0592 13 6 1.1445 -6.7273 3.2692 14 6 0.5322 -5.9586 2.2625 15 6 -0.4637 -6.5393 1.4439 16 1 -0.8421 -7.5250 1.6709 17 6 -0.9593 -5.8363 0.3391 18 7 -0.3954 -4.7156 -0.0294 19 14 -2.4214 -6.5034 -0.6131 20 1 -1.9374 -7.2945 -1.7729 21 1 -3.2350 -7.3728 0.2743 22 1 -3.2540 -5.3732 -1.0976 23 7 0.8810 -4.6829 2.0782 24 6 1.6982 -2.0316 1.4474 25 1 -0.3634 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6766 1.9564 -0.8899 30 1 1.6766 1.9563 0.8900 31 1 1.6767 -1.7488 -1.2494 32 1 1.6767 -0.2073 -2.1393 33 1 3.1300 -0.7207 -1.2495 34 1 3.0868 0.9971 1.9663 35 1 3.9142 -0.1523 3.9777 36 1 3.3210 -2.5047 4.3872 37 1 3.2128 -4.3431 4.4428 38 1 2.6094 -6.7182 4.8363 39 1 0.8582 -7.7575 3.4205 40 1 -0.7363 -4.2308 -0.7973 41 1 1.0768 -2.5561 0.7369 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241297485.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:07 Heat of formation + Delta-G solvation = 23.255059 kcal Electronic energy + Delta-G solvation = -21602.348749 eV Core-core repulsion = 18638.424785 eV Total energy + Delta-G solvation = -2963.923964 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -40.87217 -39.75708 -37.18324 -35.49691 -33.28817 -32.35008 -31.01599 -30.30143 -28.24604 -28.10116 -27.35238 -24.42836 -24.00437 -22.71171 -21.87922 -19.95288 -19.09636 -17.90456 -17.01873 -16.44792 -16.33154 -16.04451 -15.42963 -15.33125 -15.10327 -14.71647 -14.42095 -14.35437 -14.15239 -13.80540 -13.48467 -13.01496 -12.92322 -12.84444 -12.78166 -12.67050 -12.60513 -12.51680 -12.29844 -12.12092 -11.80455 -11.76352 -11.42259 -11.25271 -11.22478 -10.42960 -9.91895 -9.50555 -9.49124 -8.90941 -8.36392 -6.50411 0.09763 0.64403 1.03724 1.31885 1.37990 1.50666 1.54484 2.20816 2.75870 3.10958 3.72732 3.77006 3.93563 3.99294 4.17543 4.21249 4.38004 4.39732 4.49007 4.55588 4.71579 4.74101 4.78456 4.83526 4.88139 4.92645 4.94692 5.00020 5.06924 5.10856 5.18983 5.21627 5.27186 5.37955 5.44850 5.44872 5.48133 5.64107 5.69192 5.82235 5.89136 5.94504 6.16726 6.27713 6.29620 6.73646 6.94351 8.13270 8.42668 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.013814 B = 0.006703 C = 0.004677 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2026.435803 B = 4176.426824 C = 5985.161183 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.027 4.027 3 C -0.135 4.135 4 C -0.135 4.135 5 C -0.087 4.087 6 C -0.120 4.120 7 C -0.123 4.123 8 C -0.120 4.120 9 C -0.058 4.058 10 C 0.154 3.846 11 C -0.304 4.304 12 C -0.057 4.057 13 C -0.299 4.299 14 C 0.224 3.776 15 C -0.472 4.472 16 H 0.087 0.913 17 C 0.030 3.970 18 N -0.750 5.750 19 Si 0.982 3.018 20 H -0.262 1.262 21 H -0.257 1.257 22 H -0.268 1.268 23 N -0.501 5.501 24 C -0.097 4.097 25 H 0.053 0.947 26 H 0.074 0.926 27 H 0.031 0.969 28 H 0.066 0.934 29 H 0.070 0.930 30 H 0.065 0.935 31 H 0.031 0.969 32 H 0.074 0.926 33 H 0.055 0.945 34 H 0.155 0.845 35 H 0.156 0.844 36 H 0.131 0.869 37 H 0.128 0.872 38 H 0.136 0.864 39 H 0.110 0.890 40 H 0.278 0.722 41 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.232 11.845 -0.488 12.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.027 4.027 3 C -0.191 4.191 4 C -0.192 4.192 5 C -0.087 4.087 6 C -0.138 4.138 7 C -0.140 4.140 8 C -0.139 4.139 9 C -0.058 4.058 10 C 0.010 3.990 11 C -0.327 4.327 12 C -0.081 4.081 13 C -0.321 4.321 14 C 0.099 3.901 15 C -0.503 4.503 16 H 0.105 0.895 17 C -0.192 4.192 18 N -0.372 5.372 19 Si 0.803 3.197 20 H -0.186 1.186 21 H -0.181 1.181 22 H -0.193 1.193 23 N -0.214 5.214 24 C -0.116 4.116 25 H 0.072 0.928 26 H 0.093 0.907 27 H 0.050 0.950 28 H 0.085 0.915 29 H 0.089 0.911 30 H 0.084 0.916 31 H 0.050 0.950 32 H 0.093 0.907 33 H 0.074 0.926 34 H 0.173 0.827 35 H 0.173 0.827 36 H 0.149 0.851 37 H 0.145 0.855 38 H 0.154 0.846 39 H 0.128 0.872 40 H 0.089 0.911 41 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.789 12.434 -1.316 13.065 hybrid contribution -0.329 -1.569 0.372 1.645 sum 3.459 10.865 -0.944 11.442 Atomic orbital electron populations 1.21851 0.94319 1.00953 1.02133 1.19514 0.95335 0.96153 0.91678 1.21905 1.01495 0.92946 1.02803 1.21850 1.00893 0.99488 0.97005 1.20053 0.98345 0.93000 0.97320 1.21528 0.97460 1.01032 0.93804 1.21347 1.00583 0.93693 0.98404 1.21397 0.97985 0.95588 0.98917 1.18979 0.98975 0.91582 0.96314 1.20442 0.93034 0.93624 0.91885 1.21603 1.09053 0.96565 1.05445 1.21220 0.95035 0.94631 0.97208 1.21989 1.05111 1.00730 1.04302 1.19015 0.91875 0.88232 0.91018 1.19895 1.18286 1.03074 1.09024 0.89501 1.26883 1.00087 0.94460 0.97767 1.70126 1.35241 1.12117 1.19670 0.85200 0.77329 0.78869 0.78348 1.18630 1.18108 1.19289 1.68627 1.15503 1.11255 1.26052 1.21377 0.98416 0.94703 0.97080 0.92763 0.90680 0.95007 0.91499 0.91063 0.91609 0.94966 0.90679 0.92592 0.82746 0.82672 0.85094 0.85451 0.84625 0.87238 0.91128 0.86628 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.88 8.29 71.98 0.60 -3.28 16 2 C -0.03 -0.73 0.85 -52.93 -0.05 -0.78 16 3 C -0.13 -2.59 7.13 71.98 0.51 -2.08 16 4 C -0.14 -3.81 8.29 71.98 0.60 -3.21 16 5 C -0.09 -2.90 4.76 -19.90 -0.09 -3.00 16 6 C -0.12 -3.31 8.97 22.32 0.20 -3.11 16 7 C -0.12 -3.41 10.03 22.24 0.22 -3.19 16 8 C -0.12 -4.22 9.39 22.49 0.21 -4.01 16 9 C -0.06 -2.57 5.86 -20.04 -0.12 -2.69 16 10 C 0.15 7.93 6.71 42.17 0.28 8.22 16 11 C -0.30 -14.01 9.45 22.78 0.22 -13.80 16 12 C -0.06 -2.59 10.15 22.39 0.23 -2.36 16 13 C -0.30 -15.30 9.83 22.88 0.22 -15.07 16 14 C 0.22 12.94 6.51 40.26 0.26 13.20 16 15 C -0.47 -26.35 9.13 23.48 0.21 -26.14 16 16 H 0.09 4.56 7.86 -2.91 -0.02 4.53 16 17 C 0.03 1.57 5.46 85.29 0.47 2.04 16 18 N -0.75 -40.68 11.48 21.84 0.25 -40.43 16 19 Si 0.98 39.02 29.57 68.60 2.03 41.04 16 20 H -0.26 -9.94 7.11 99.48 0.71 -9.23 16 21 H -0.26 -9.95 7.11 99.48 0.71 -9.24 16 22 H -0.27 -10.23 7.11 99.48 0.71 -9.52 16 23 N -0.50 -28.95 7.11 -178.19 -1.27 -30.21 16 24 C -0.10 -4.19 8.22 22.49 0.18 -4.00 16 25 H 0.05 1.49 8.14 -2.39 -0.02 1.48 16 26 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 27 H 0.03 1.12 7.38 -2.39 -0.02 1.10 16 28 H 0.07 1.17 7.51 -2.39 -0.02 1.15 16 29 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 30 H 0.06 1.16 7.51 -2.39 -0.02 1.14 16 31 H 0.03 1.11 7.38 -2.39 -0.02 1.09 16 32 H 0.07 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 34 H 0.16 3.09 5.88 -2.91 -0.02 3.08 16 35 H 0.16 3.05 8.06 -2.91 -0.02 3.03 16 36 H 0.13 4.16 6.32 -2.91 -0.02 4.14 16 37 H 0.13 4.95 6.32 -2.91 -0.02 4.93 16 38 H 0.14 4.96 8.06 -2.91 -0.02 4.93 16 39 H 0.11 5.16 8.06 -2.91 -0.02 5.13 16 40 H 0.28 13.70 8.29 -92.71 -0.77 12.93 16 41 H 0.12 5.82 6.50 -2.91 -0.02 5.80 16 Total: -1.00 -66.53 334.35 6.19 -60.34 By element: Atomic # 1 Polarization: 31.50 SS G_CDS: 1.02 Total: 32.52 kcal Atomic # 6 Polarization: -67.42 SS G_CDS: 4.16 Total: -63.26 kcal Atomic # 7 Polarization: -69.63 SS G_CDS: -1.02 Total: -70.64 kcal Atomic # 14 Polarization: 39.02 SS G_CDS: 2.03 Total: 41.04 kcal Total: -66.53 6.19 -60.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241297485.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.594 kcal (2) G-P(sol) polarization free energy of solvation -66.530 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.065 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.190 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds