Wall clock time and date at job start Tue Mar 31 2020 05:16:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.47127 * 2 1 4 4 C 1.52998 * 109.47212 * 239.99286 * 2 1 3 5 5 C 1.50702 * 109.46522 * 119.99625 * 2 1 3 6 6 C 1.38350 * 119.94006 * 239.97489 * 5 2 1 7 7 C 1.38298 * 120.25075 * 179.97438 * 6 5 2 8 8 C 1.38039 * 120.11739 * 359.73080 * 7 6 5 9 9 C 1.39327 * 119.87854 * 0.56722 * 8 7 6 10 10 C 1.48363 * 120.12194 * 179.70608 * 9 8 7 11 11 C 1.38892 * 119.61552 * 359.44666 * 10 9 8 12 12 C 1.40848 * 118.76504 * 180.27518 * 11 10 9 13 13 C 1.41532 * 120.98768 * 180.02562 * 12 11 10 14 14 H 1.07997 * 119.99554 * 23.17530 * 13 12 11 15 15 C 1.40044 * 120.00132 * 203.18016 * 13 12 11 16 16 N 1.30741 * 120.00100 * 17.26855 * 15 13 12 17 17 Si 1.86800 * 120.00015 * 197.27580 * 15 13 12 18 18 H 1.48498 * 109.47243 * 59.99343 * 17 15 13 19 19 H 1.48504 * 109.47233 * 179.97438 * 17 15 13 20 20 H 1.48501 * 109.46775 * 299.99540 * 17 15 13 21 21 C 1.41138 * 118.02719 * 0.02562 * 12 11 10 22 22 C 1.37742 * 119.07052 * 359.97438 * 21 12 11 23 23 N 1.31925 * 121.15567 * 0.02562 * 22 21 12 24 24 C 1.37996 * 119.93987 * 60.00374 * 5 2 1 25 25 H 1.08998 * 109.47074 * 300.00819 * 1 2 3 26 26 H 1.09001 * 109.46551 * 60.00037 * 1 2 3 27 27 H 1.08996 * 109.47311 * 179.97438 * 1 2 3 28 28 H 1.09006 * 109.47097 * 179.97438 * 3 2 1 29 29 H 1.08993 * 109.47069 * 299.99519 * 3 2 1 30 30 H 1.08999 * 109.47341 * 59.99876 * 3 2 1 31 31 H 1.08991 * 109.47337 * 300.00241 * 4 2 1 32 32 H 1.09001 * 109.46809 * 60.00836 * 4 2 1 33 33 H 1.08997 * 109.46658 * 180.02562 * 4 2 1 34 34 H 1.08002 * 119.87487 * 0.02875 * 6 5 2 35 35 H 1.08000 * 119.94111 * 179.97438 * 7 6 5 36 36 H 1.08008 * 120.05744 * 180.30146 * 8 7 6 37 37 H 1.08008 * 120.61892 * 0.26538 * 11 10 9 38 38 H 0.96990 * 119.99887 * 180.02562 * 16 15 13 39 39 H 1.07996 * 120.46416 * 180.02562 * 21 12 11 40 40 H 1.07996 * 119.42197 * 180.02562 * 22 21 12 41 41 H 1.07997 * 120.05984 * 359.97202 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0401 -0.7214 -1.2491 5 6 2.0323 -0.7104 1.2306 6 6 2.8280 -0.0369 2.1402 7 6 3.2919 -0.6824 3.2719 8 6 2.9583 -2.0019 3.5025 9 6 2.1625 -2.6869 2.5867 10 6 1.8061 -4.1070 2.8260 11 6 2.2798 -4.7517 3.9613 12 6 1.9352 -6.1017 4.1677 13 6 2.3916 -6.8041 5.3086 14 1 2.6770 -6.2619 6.1979 15 6 2.4731 -8.2019 5.2842 16 7 2.4606 -8.8376 4.1418 17 14 2.5995 -9.1582 6.8838 18 1 1.4042 -8.8830 7.7208 19 1 2.6718 -10.6116 6.5873 20 1 3.8226 -8.7403 7.6150 21 6 1.1214 -6.7334 3.2030 22 6 0.6991 -6.0124 2.1079 23 7 1.0427 -4.7486 1.9490 24 6 1.6981 -2.0315 1.4477 25 1 -0.3633 0.5140 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1301 1.4425 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 1.6768 -1.7490 -1.2491 32 1 1.6768 -0.2075 -2.1392 33 1 3.1301 -0.7217 -1.2488 34 1 3.0871 0.9970 1.9663 35 1 3.9131 -0.1520 3.9785 36 1 3.3172 -2.5036 4.3891 37 1 2.9010 -4.2276 4.6727 38 1 2.5167 -9.8057 4.1249 39 1 0.8331 -7.7673 3.3221 40 1 0.0759 -6.4900 1.3665 41 1 1.0769 -2.5563 0.7370 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241300958.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:10 Heat of formation + Delta-G solvation = 25.477624 kcal Electronic energy + Delta-G solvation = -20923.580865 eV Core-core repulsion = 17959.753278 eV Total energy + Delta-G solvation = -2963.827586 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.63195 -38.19858 -36.04726 -34.17714 -31.58566 -30.85482 -29.77587 -28.38692 -27.15780 -27.04423 -25.97952 -23.08633 -22.46342 -21.21234 -20.42903 -18.81231 -17.38010 -16.42977 -15.51028 -14.99647 -14.94989 -14.38653 -14.19807 -14.11139 -13.89802 -13.40127 -13.22018 -12.89850 -12.80788 -12.44231 -12.32172 -11.97576 -11.74306 -11.62007 -11.56423 -11.43768 -11.30265 -11.15298 -10.92369 -10.85917 -10.47081 -10.28619 -10.22999 -9.85389 -9.46627 -8.79406 -8.30138 -8.10389 -8.02097 -7.17419 -6.89169 -4.64451 1.51586 1.85263 2.72357 2.91682 2.98918 3.01398 3.23398 3.81391 4.24020 4.67428 4.72142 4.86486 5.06899 5.20035 5.36423 5.39818 5.55912 5.60195 5.65846 5.67836 5.77938 5.80170 5.88604 5.96071 5.99602 6.01057 6.09344 6.14388 6.34115 6.38160 6.42491 6.49408 6.69821 6.76631 6.85331 6.91244 6.98833 7.07789 7.23537 7.28985 7.44611 7.49474 7.80437 8.05897 8.39956 8.68253 8.69304 9.53631 10.01765 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.032727 B = 0.003675 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 855.352886 B = 7617.942108 C = 8217.847075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.026 4.026 3 C -0.141 4.141 4 C -0.139 4.139 5 C -0.083 4.083 6 C -0.133 4.133 7 C -0.125 4.125 8 C -0.116 4.116 9 C -0.011 4.011 10 C 0.151 3.849 11 C -0.252 4.252 12 C 0.126 3.874 13 C -0.456 4.456 14 H 0.082 0.918 15 C 0.078 3.922 16 N -0.785 5.785 17 Si 0.913 3.087 18 H -0.262 1.262 19 H -0.277 1.277 20 H -0.264 1.264 21 C -0.210 4.210 22 C 0.087 3.913 23 N -0.563 5.563 24 C -0.086 4.086 25 H 0.054 0.946 26 H 0.053 0.947 27 H 0.061 0.939 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.118 0.882 35 H 0.116 0.884 36 H 0.124 0.876 37 H 0.104 0.896 38 H 0.284 0.716 39 H 0.127 0.873 40 H 0.122 0.878 41 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.408 12.371 -4.549 13.188 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.026 4.026 3 C -0.198 4.198 4 C -0.196 4.196 5 C -0.083 4.083 6 C -0.151 4.151 7 C -0.143 4.143 8 C -0.135 4.135 9 C -0.012 4.012 10 C 0.017 3.983 11 C -0.275 4.275 12 C 0.118 3.882 13 C -0.487 4.487 14 H 0.100 0.900 15 C -0.142 4.142 16 N -0.410 5.410 17 Si 0.737 3.263 18 H -0.186 1.186 19 H -0.202 1.202 20 H -0.188 1.188 21 C -0.233 4.233 22 C -0.066 4.066 23 N -0.278 5.278 24 C -0.105 4.105 25 H 0.073 0.927 26 H 0.072 0.928 27 H 0.080 0.920 28 H 0.076 0.924 29 H 0.073 0.927 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.136 0.864 35 H 0.134 0.866 36 H 0.142 0.858 37 H 0.122 0.878 38 H 0.095 0.905 39 H 0.145 0.855 40 H 0.140 0.860 41 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -0.705 12.557 -5.423 13.696 hybrid contribution 0.478 -1.179 1.524 1.985 sum -0.228 11.378 -3.899 12.030 Atomic orbital electron populations 1.21890 0.93918 1.02438 1.01321 1.19441 0.95590 0.94624 0.92992 1.21940 1.01044 0.95304 1.01509 1.21890 1.01108 1.00670 0.95925 1.19708 0.98556 0.94159 0.95889 1.21061 0.99455 0.99685 0.94932 1.20950 1.00816 0.94792 0.97726 1.21293 0.98336 0.94360 0.99462 1.18813 0.96038 0.92267 0.94108 1.19130 0.95650 0.91464 0.92048 1.21869 1.08298 0.97265 1.00057 1.17763 0.87858 0.90531 0.92037 1.19579 1.38607 0.91124 0.99406 0.90033 1.25976 0.92005 0.98355 0.97844 1.69758 1.33802 1.10575 1.26835 0.86287 0.80133 0.78112 0.81797 1.18638 1.20158 1.18808 1.22272 1.02043 1.01680 0.97255 1.21956 0.98156 0.90004 0.96448 1.67255 1.18462 1.10535 1.31511 1.21115 0.99065 0.93113 0.97165 0.92677 0.92761 0.92017 0.92417 0.92748 0.92427 0.92009 0.92751 0.92662 0.86391 0.86570 0.85774 0.87759 0.90454 0.85523 0.86043 0.85163 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 8.29 37.16 0.31 -1.30 16 2 C -0.03 -0.32 0.85 -155.66 -0.13 -0.45 16 3 C -0.14 -1.40 7.13 37.16 0.26 -1.14 16 4 C -0.14 -1.63 8.29 37.16 0.31 -1.32 16 5 C -0.08 -1.25 4.76 -104.67 -0.50 -1.75 16 6 C -0.13 -1.89 8.97 -39.52 -0.35 -2.24 16 7 C -0.12 -1.86 10.03 -39.63 -0.40 -2.26 16 8 C -0.12 -2.06 9.41 -39.25 -0.37 -2.43 16 9 C -0.01 -0.23 5.88 -104.90 -0.62 -0.85 16 10 C 0.15 3.57 6.73 -83.04 -0.56 3.01 16 11 C -0.25 -6.21 9.25 -38.35 -0.35 -6.57 16 12 C 0.13 3.33 5.61 -106.55 -0.60 2.73 16 13 C -0.46 -11.79 9.12 -37.65 -0.34 -12.13 16 14 H 0.08 2.01 7.90 -52.49 -0.41 1.59 16 15 C 0.08 1.90 5.20 -17.34 -0.09 1.81 16 16 N -0.78 -19.62 10.90 55.55 0.61 -19.02 16 17 Si 0.91 17.99 29.59 -169.99 -5.03 12.95 16 18 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 19 H -0.28 -5.30 7.11 56.52 0.40 -4.90 16 20 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 21 C -0.21 -5.41 8.80 -38.66 -0.34 -5.75 16 22 C 0.09 2.08 11.15 -17.69 -0.20 1.88 16 23 N -0.56 -13.63 9.40 -9.94 -0.09 -13.72 16 24 C -0.09 -1.56 8.23 -39.25 -0.32 -1.88 16 25 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.06 0.79 7.38 -51.93 -0.38 0.40 16 28 H 0.06 0.56 7.51 -51.93 -0.39 0.17 16 29 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.55 7.51 -51.93 -0.39 0.16 16 31 H 0.06 0.80 7.38 -51.93 -0.38 0.41 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.12 1.37 5.88 -52.49 -0.31 1.06 16 35 H 0.12 1.41 8.06 -52.49 -0.42 0.99 16 36 H 0.12 2.15 6.18 -52.48 -0.32 1.82 16 37 H 0.10 2.37 6.18 -52.48 -0.32 2.05 16 38 H 0.28 6.44 8.29 -40.82 -0.34 6.10 16 39 H 0.13 3.29 6.16 -52.49 -0.32 2.97 16 40 H 0.12 2.55 8.06 -52.49 -0.42 2.13 16 41 H 0.13 2.45 6.57 -52.49 -0.34 2.10 16 LS Contribution 332.66 15.07 5.01 5.01 Total: -1.00 -27.62 332.66 -9.48 -37.10 By element: Atomic # 1 Polarization: 14.00 SS G_CDS: -5.68 Total: 8.32 kcal Atomic # 6 Polarization: -26.36 SS G_CDS: -4.29 Total: -30.65 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: 0.51 Total: -32.74 kcal Atomic # 14 Polarization: 17.99 SS G_CDS: -5.03 Total: 12.95 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -27.62 -9.48 -37.10 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241300958.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.577 kcal (2) G-P(sol) polarization free energy of solvation -27.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.956 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.100 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds