Wall clock time and date at job start Tue Mar 31 2020 05:16:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47461 * 2 1 4 4 C 1.53003 * 109.46957 * 240.00001 * 2 1 3 5 5 C 1.50701 * 109.47033 * 120.00121 * 2 1 3 6 6 C 1.38414 * 119.92833 * 359.97438 * 5 2 1 7 7 C 1.38375 * 120.29192 * 179.70026 * 6 5 2 8 8 C 1.37947 * 120.15038 * 0.25222 * 7 6 5 9 9 C 1.39608 * 119.85023 * 0.02562 * 8 7 6 10 10 C 1.47966 * 120.14314 * 179.97438 * 9 8 7 11 11 C 1.40254 * 120.34881 * 0.02562 * 10 9 8 12 12 C 1.36694 * 118.60769 * 179.97438 * 11 10 9 13 13 C 1.40872 * 119.24785 * 0.02562 * 12 11 10 14 14 C 1.40998 * 119.67526 * 180.02562 * 13 12 11 15 15 H 1.07994 * 120.00526 * 359.97438 * 14 13 12 16 16 C 1.40103 * 119.99441 * 179.97438 * 14 13 12 17 17 N 1.30714 * 120.00448 * 359.97438 * 16 14 13 18 18 Si 1.86809 * 119.99681 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46959 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46918 * 119.99995 * 18 16 14 21 21 H 1.48494 * 109.47122 * 239.99632 * 18 16 14 22 22 N 1.33774 * 120.64150 * 359.97438 * 13 12 11 23 23 C 1.31191 * 121.50577 * 359.72280 * 22 13 12 24 24 C 1.37911 * 119.92701 * 180.25303 * 5 2 1 25 25 H 1.09008 * 109.47128 * 299.99688 * 1 2 3 26 26 H 1.08999 * 109.47400 * 59.99388 * 1 2 3 27 27 H 1.08997 * 109.47449 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47510 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47312 * 300.00665 * 3 2 1 30 30 H 1.09008 * 109.46695 * 60.00046 * 3 2 1 31 31 H 1.08997 * 109.47007 * 300.00229 * 4 2 1 32 32 H 1.08999 * 109.46567 * 60.00100 * 4 2 1 33 33 H 1.09001 * 109.46965 * 179.97438 * 4 2 1 34 34 H 1.08002 * 119.85541 * 359.97438 * 6 5 2 35 35 H 1.08006 * 119.92237 * 180.28046 * 7 6 5 36 36 H 1.08002 * 120.07431 * 179.97438 * 8 7 6 37 37 H 1.08001 * 120.70120 * 359.95078 * 11 10 9 38 38 H 1.07995 * 120.37564 * 179.97438 * 12 11 10 39 39 H 0.97001 * 119.99781 * 180.02562 * 17 16 14 40 40 H 1.08004 * 119.65930 * 180.26012 * 23 22 13 41 41 H 1.08007 * 120.07120 * 359.97438 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7104 1.2305 6 6 1.1315 -1.2355 2.1408 7 6 1.5844 -1.8946 3.2700 8 6 2.9384 -2.0281 3.4981 9 6 3.8523 -1.4959 2.5868 10 6 5.3060 -1.6348 2.8254 11 6 5.7764 -2.3014 3.9662 12 6 7.1265 -2.4096 4.1509 13 6 7.9988 -1.8512 3.1960 14 6 9.3930 -1.9580 3.3773 15 1 9.7874 -2.4656 4.2451 16 6 10.2666 -1.4056 2.4316 17 7 9.7893 -0.7917 1.3809 18 14 12.1138 -1.5464 2.6721 19 1 12.3943 -2.2826 3.9308 20 1 12.7075 -2.2815 1.5264 21 1 12.7079 -0.1877 2.7497 22 7 7.5172 -1.2216 2.1185 23 6 6.2269 -1.1070 1.9110 24 6 3.3885 -0.8310 1.4499 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6766 -1.7489 -1.2493 32 1 1.6766 -0.2074 -2.1392 33 1 3.1300 -0.7209 -1.2495 34 1 0.0704 -1.1340 1.9669 35 1 0.8763 -2.3060 3.9742 36 1 3.2905 -2.5425 4.3801 37 1 5.0865 -2.7202 4.6839 38 1 7.5199 -2.9166 5.0195 39 1 10.3942 -0.4096 0.7260 40 1 5.8707 -0.5961 1.0286 41 1 4.0903 -0.4173 0.7408 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241301651.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:37 Heat of formation + Delta-G solvation = 33.818989 kcal Electronic energy + Delta-G solvation = -20957.682692 eV Core-core repulsion = 17994.216814 eV Total energy + Delta-G solvation = -2963.465878 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 2.02 seconds Orbital eigenvalues (eV) -39.53026 -38.14399 -36.02164 -33.85562 -31.70500 -30.85019 -29.61165 -28.76538 -27.30372 -27.13120 -25.42643 -23.04959 -22.35077 -21.22482 -20.35262 -18.53891 -17.64964 -16.63978 -15.67817 -14.89560 -14.82100 -14.46855 -14.15529 -14.06812 -13.88688 -13.20537 -13.05430 -12.74105 -12.70006 -12.29402 -12.26394 -12.07895 -11.75958 -11.59669 -11.45675 -11.30299 -11.20003 -11.05115 -10.94529 -10.83972 -10.68496 -10.19751 -10.16506 -9.93361 -9.64923 -8.80141 -8.29095 -8.21151 -7.68283 -7.18089 -6.58374 -4.63229 1.64969 1.93433 2.75531 2.99502 3.01458 3.03934 3.17018 3.80432 4.32618 4.72276 4.77447 4.91042 5.11131 5.40855 5.44882 5.51819 5.60896 5.70256 5.70290 5.82254 5.83122 5.83539 5.91952 5.98276 5.98887 6.07056 6.09411 6.16010 6.19438 6.38928 6.40869 6.51195 6.62036 6.69286 6.73097 6.92922 7.01174 7.07928 7.13283 7.28167 7.47000 7.64263 7.76676 7.90301 8.06513 8.46155 8.75657 9.95616 10.11663 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026012 B = 0.003865 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.151735 B = 7241.987202 C = 8127.079560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.028 4.028 3 C -0.138 4.138 4 C -0.138 4.138 5 C -0.061 4.061 6 C -0.165 4.165 7 C -0.109 4.109 8 C -0.154 4.154 9 C 0.035 3.965 10 C -0.277 4.277 11 C -0.036 4.036 12 C -0.272 4.272 13 C 0.251 3.749 14 C -0.409 4.409 15 H 0.088 0.912 16 C 0.063 3.937 17 N -0.700 5.700 18 Si 0.911 3.089 19 H -0.258 1.258 20 H -0.271 1.271 21 H -0.271 1.271 22 N -0.488 5.488 23 C 0.157 3.843 24 C -0.140 4.140 25 H 0.056 0.944 26 H 0.052 0.948 27 H 0.056 0.944 28 H 0.060 0.940 29 H 0.053 0.947 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.053 0.947 33 H 0.060 0.940 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.114 0.886 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.276 0.724 40 H 0.122 0.878 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.622 1.347 -2.365 11.936 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.028 4.028 3 C -0.195 4.195 4 C -0.195 4.195 5 C -0.061 4.061 6 C -0.183 4.183 7 C -0.127 4.127 8 C -0.172 4.172 9 C 0.034 3.966 10 C -0.282 4.282 11 C -0.059 4.059 12 C -0.295 4.295 13 C 0.128 3.872 14 C -0.438 4.438 15 H 0.106 0.894 16 C -0.164 4.164 17 N -0.319 5.319 18 Si 0.735 3.265 19 H -0.182 1.182 20 H -0.196 1.196 21 H -0.196 1.196 22 N -0.200 5.200 23 C -0.012 4.012 24 C -0.158 4.158 25 H 0.075 0.925 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.072 0.928 33 H 0.079 0.921 34 H 0.132 0.868 35 H 0.127 0.873 36 H 0.132 0.868 37 H 0.117 0.883 38 H 0.118 0.882 39 H 0.088 0.912 40 H 0.139 0.861 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -10.864 1.794 -3.124 11.446 hybrid contribution 0.146 -0.469 0.800 0.939 sum -10.719 1.325 -2.324 11.048 Atomic orbital electron populations 1.21928 0.94691 1.01670 1.01402 1.19463 0.95182 0.95043 0.93159 1.21886 1.01627 0.94690 1.01328 1.21884 1.01624 1.00057 0.95958 1.19576 0.93296 0.98049 0.95206 1.20894 0.98769 1.02810 0.95825 1.20895 0.95302 0.99261 0.97267 1.21130 0.92697 1.03172 1.00207 1.18842 0.92660 0.92699 0.92420 1.19063 0.91103 1.16216 1.01854 1.20662 0.94931 0.95242 0.95054 1.21434 0.93582 1.11341 1.03117 1.18679 0.93625 0.87665 0.87186 1.19826 0.89926 1.28172 1.05893 0.89383 1.26199 1.01704 0.93977 0.94521 1.70131 1.36670 1.19268 1.05879 0.86202 0.81406 0.79138 0.79779 1.18193 1.19580 1.19576 1.68798 1.11593 1.18775 1.20818 1.22760 0.89824 0.93141 0.95514 1.20956 0.94394 1.02233 0.98258 0.92464 0.92864 0.92461 0.92109 0.92794 0.92661 0.92662 0.92792 0.92114 0.86847 0.87264 0.86837 0.88344 0.88159 0.91224 0.86115 0.86477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.46 7.13 37.16 0.26 -1.20 16 2 C -0.03 -0.35 0.85 -155.66 -0.13 -0.49 16 3 C -0.14 -1.65 8.28 37.16 0.31 -1.34 16 4 C -0.14 -1.65 8.29 37.16 0.31 -1.34 16 5 C -0.06 -0.94 4.76 -104.68 -0.50 -1.44 16 6 C -0.16 -2.43 8.98 -39.47 -0.35 -2.78 16 7 C -0.11 -1.68 10.03 -39.64 -0.40 -2.07 16 8 C -0.15 -2.72 9.44 -39.18 -0.37 -3.08 16 9 C 0.03 0.68 5.88 -104.88 -0.62 0.07 16 10 C -0.28 -6.25 5.92 -104.46 -0.62 -6.86 16 11 C -0.04 -0.80 9.46 -39.38 -0.37 -1.17 16 12 C -0.27 -6.57 9.76 -39.14 -0.38 -6.95 16 13 C 0.25 6.73 6.55 -84.98 -0.56 6.17 16 14 C -0.41 -10.55 9.12 -37.84 -0.35 -10.90 16 15 H 0.09 2.11 7.85 -52.49 -0.41 1.70 16 16 C 0.06 1.55 5.50 -17.33 -0.10 1.45 16 17 N -0.70 -17.97 11.44 55.55 0.64 -17.34 16 18 Si 0.91 17.75 29.56 -169.99 -5.03 12.72 16 19 H -0.26 -4.93 7.11 56.52 0.40 -4.52 16 20 H -0.27 -5.20 7.11 56.52 0.40 -4.79 16 21 H -0.27 -5.20 7.11 56.52 0.40 -4.79 16 22 N -0.49 -13.24 7.83 -10.84 -0.08 -13.33 16 23 C 0.16 3.79 10.60 -17.13 -0.18 3.61 16 24 C -0.14 -2.49 8.10 -39.18 -0.32 -2.80 16 25 H 0.06 0.59 7.51 -51.92 -0.39 0.20 16 26 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.59 7.51 -51.93 -0.39 0.20 16 28 H 0.06 0.78 7.37 -51.93 -0.38 0.40 16 29 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.05 0.66 8.14 -51.92 -0.42 0.24 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 33 H 0.06 0.78 7.40 -51.93 -0.38 0.39 16 34 H 0.11 1.41 5.87 -52.49 -0.31 1.10 16 35 H 0.11 1.39 8.06 -52.48 -0.42 0.97 16 36 H 0.11 1.90 6.25 -52.49 -0.33 1.57 16 37 H 0.10 1.92 6.30 -52.49 -0.33 1.59 16 38 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 39 H 0.28 6.36 8.29 -40.82 -0.34 6.02 16 40 H 0.12 2.64 6.21 -52.48 -0.33 2.32 16 41 H 0.12 2.04 5.25 -52.48 -0.28 1.77 16 LS Contribution 331.44 15.07 4.99 4.99 Total: -1.00 -27.96 331.44 -9.46 -37.42 By element: Atomic # 1 Polarization: 12.29 SS G_CDS: -5.62 Total: 6.67 kcal Atomic # 6 Polarization: -26.79 SS G_CDS: -4.36 Total: -31.14 kcal Atomic # 7 Polarization: -31.22 SS G_CDS: 0.55 Total: -30.66 kcal Atomic # 14 Polarization: 17.75 SS G_CDS: -5.03 Total: 12.72 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -27.96 -9.46 -37.42 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241301651.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.237 kcal (2) G-P(sol) polarization free energy of solvation -27.960 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.276 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.418 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.02 seconds