Wall clock time and date at job start Tue Mar 31 2020 05:16:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.47461 * 2 1 4 4 C 1.53003 * 109.46957 * 240.00001 * 2 1 3 5 5 C 1.50701 * 109.47033 * 120.00121 * 2 1 3 6 6 C 1.38414 * 119.92833 * 359.97438 * 5 2 1 7 7 C 1.38375 * 120.29192 * 179.70026 * 6 5 2 8 8 C 1.37947 * 120.15038 * 0.25222 * 7 6 5 9 9 C 1.39608 * 119.85023 * 0.02562 * 8 7 6 10 10 C 1.47966 * 120.14314 * 179.97438 * 9 8 7 11 11 C 1.40254 * 120.34881 * 0.02562 * 10 9 8 12 12 C 1.36694 * 118.60769 * 179.97438 * 11 10 9 13 13 C 1.40872 * 119.24785 * 0.02562 * 12 11 10 14 14 C 1.40998 * 119.67526 * 180.02562 * 13 12 11 15 15 H 1.07994 * 120.00526 * 359.97438 * 14 13 12 16 16 C 1.40103 * 119.99441 * 179.97438 * 14 13 12 17 17 N 1.30714 * 120.00448 * 359.97438 * 16 14 13 18 18 Si 1.86809 * 119.99681 * 179.97438 * 16 14 13 19 19 H 1.48496 * 109.46959 * 0.02562 * 18 16 14 20 20 H 1.48503 * 109.46918 * 119.99995 * 18 16 14 21 21 H 1.48494 * 109.47122 * 239.99632 * 18 16 14 22 22 N 1.33774 * 120.64150 * 359.97438 * 13 12 11 23 23 C 1.31191 * 121.50577 * 359.72280 * 22 13 12 24 24 C 1.37911 * 119.92701 * 180.25303 * 5 2 1 25 25 H 1.09008 * 109.47128 * 299.99688 * 1 2 3 26 26 H 1.08999 * 109.47400 * 59.99388 * 1 2 3 27 27 H 1.08997 * 109.47449 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47510 * 180.02562 * 3 2 1 29 29 H 1.08999 * 109.47312 * 300.00665 * 3 2 1 30 30 H 1.09008 * 109.46695 * 60.00046 * 3 2 1 31 31 H 1.08997 * 109.47007 * 300.00229 * 4 2 1 32 32 H 1.08999 * 109.46567 * 60.00100 * 4 2 1 33 33 H 1.09001 * 109.46965 * 179.97438 * 4 2 1 34 34 H 1.08002 * 119.85541 * 359.97438 * 6 5 2 35 35 H 1.08006 * 119.92237 * 180.28046 * 7 6 5 36 36 H 1.08002 * 120.07431 * 179.97438 * 8 7 6 37 37 H 1.08001 * 120.70120 * 359.95078 * 11 10 9 38 38 H 1.07995 * 120.37564 * 179.97438 * 12 11 10 39 39 H 0.97001 * 119.99781 * 180.02562 * 17 16 14 40 40 H 1.08004 * 119.65930 * 180.26012 * 23 22 13 41 41 H 1.08007 * 120.07120 * 359.97438 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 2.0323 -0.7104 1.2305 6 6 1.1315 -1.2355 2.1408 7 6 1.5844 -1.8946 3.2700 8 6 2.9384 -2.0281 3.4981 9 6 3.8523 -1.4959 2.5868 10 6 5.3060 -1.6348 2.8254 11 6 5.7764 -2.3014 3.9662 12 6 7.1265 -2.4096 4.1509 13 6 7.9988 -1.8512 3.1960 14 6 9.3930 -1.9580 3.3773 15 1 9.7874 -2.4656 4.2451 16 6 10.2666 -1.4056 2.4316 17 7 9.7893 -0.7917 1.3809 18 14 12.1138 -1.5464 2.6721 19 1 12.3943 -2.2826 3.9308 20 1 12.7075 -2.2815 1.5264 21 1 12.7079 -0.1877 2.7497 22 7 7.5172 -1.2216 2.1185 23 6 6.2269 -1.1070 1.9110 24 6 3.3885 -0.8310 1.4499 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1301 1.4424 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8901 31 1 1.6766 -1.7489 -1.2493 32 1 1.6766 -0.2074 -2.1392 33 1 3.1300 -0.7209 -1.2495 34 1 0.0704 -1.1340 1.9669 35 1 0.8763 -2.3060 3.9742 36 1 3.2905 -2.5425 4.3801 37 1 5.0865 -2.7202 4.6839 38 1 7.5199 -2.9166 5.0195 39 1 10.3942 -0.4096 0.7260 40 1 5.8707 -0.5961 1.0286 41 1 4.0903 -0.4173 0.7408 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241301651.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:36 Heat of formation + Delta-G solvation = 21.744261 kcal Electronic energy + Delta-G solvation = -20958.206291 eV Core-core repulsion = 17994.216814 eV Total energy + Delta-G solvation = -2963.989477 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.89171 -39.82644 -37.23107 -35.60992 -33.29893 -32.64270 -31.03200 -30.25631 -28.37675 -28.08885 -27.07183 -24.55803 -23.94647 -22.78217 -21.87198 -19.80137 -19.41997 -18.02055 -17.37132 -16.40207 -16.24922 -15.97794 -15.40472 -15.37907 -15.10200 -14.50546 -14.42291 -14.36844 -14.26240 -13.90924 -13.55650 -13.21496 -13.01487 -12.79631 -12.77435 -12.76006 -12.51930 -12.43288 -12.38980 -12.14690 -11.81328 -11.78601 -11.34939 -11.34636 -11.27150 -10.47840 -10.07590 -9.55992 -9.52325 -8.85382 -8.38891 -6.52858 0.13624 0.62999 1.04211 1.26896 1.39041 1.55441 1.58139 2.18391 2.72294 3.14126 3.71662 3.88687 3.91337 4.05316 4.16093 4.17265 4.18027 4.36586 4.45778 4.47074 4.64650 4.67328 4.78601 4.79525 4.86174 4.90572 4.92903 5.03347 5.06447 5.11432 5.12848 5.22838 5.23392 5.35734 5.43281 5.45381 5.45659 5.52508 5.64627 5.79142 5.89154 6.04327 6.07134 6.21643 6.30829 6.62444 6.86643 8.08970 8.34403 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.026012 B = 0.003865 C = 0.003444 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1076.151735 B = 7241.987202 C = 8127.079560 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.030 4.030 3 C -0.138 4.138 4 C -0.138 4.138 5 C -0.064 4.064 6 C -0.151 4.151 7 C -0.108 4.108 8 C -0.158 4.158 9 C -0.003 4.003 10 C -0.265 4.265 11 C -0.041 4.041 12 C -0.286 4.286 13 C 0.217 3.783 14 C -0.449 4.449 15 H 0.095 0.905 16 C 0.020 3.980 17 N -0.746 5.746 18 Si 0.993 3.007 19 H -0.251 1.251 20 H -0.265 1.265 21 H -0.265 1.265 22 N -0.521 5.521 23 C 0.130 3.870 24 C -0.146 4.146 25 H 0.062 0.938 26 H 0.070 0.930 27 H 0.062 0.938 28 H 0.041 0.959 29 H 0.074 0.926 30 H 0.053 0.947 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.041 0.959 34 H 0.147 0.853 35 H 0.144 0.856 36 H 0.120 0.880 37 H 0.130 0.870 38 H 0.115 0.885 39 H 0.283 0.717 40 H 0.130 0.870 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.331 1.239 -2.188 14.550 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.030 4.030 3 C -0.195 4.195 4 C -0.195 4.195 5 C -0.064 4.064 6 C -0.169 4.169 7 C -0.126 4.126 8 C -0.176 4.176 9 C -0.004 4.004 10 C -0.270 4.270 11 C -0.064 4.064 12 C -0.309 4.309 13 C 0.094 3.906 14 C -0.479 4.479 15 H 0.113 0.887 16 C -0.203 4.203 17 N -0.367 5.367 18 Si 0.812 3.188 19 H -0.174 1.174 20 H -0.189 1.189 21 H -0.189 1.189 22 N -0.234 5.234 23 C -0.037 4.037 24 C -0.165 4.165 25 H 0.081 0.919 26 H 0.089 0.911 27 H 0.081 0.919 28 H 0.060 0.940 29 H 0.093 0.907 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.165 0.835 35 H 0.162 0.838 36 H 0.138 0.862 37 H 0.148 0.852 38 H 0.133 0.867 39 H 0.093 0.907 40 H 0.147 0.853 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -13.621 1.690 -2.952 14.039 hybrid contribution 0.594 -0.414 0.708 1.012 sum -13.027 1.276 -2.244 13.280 Atomic orbital electron populations 1.21913 0.92419 1.02421 1.02649 1.19552 0.96939 0.94702 0.91774 1.21885 1.00492 0.94783 1.02347 1.21883 1.00487 1.00324 0.96803 1.19947 0.92277 0.97679 0.96540 1.21377 1.00352 1.00446 0.94683 1.21291 0.94752 0.98563 0.97995 1.21312 0.93632 1.02803 0.99887 1.18857 0.91320 0.95692 0.94523 1.19405 0.92848 1.13939 1.00855 1.21009 0.94860 0.94958 0.95603 1.21640 0.94283 1.11655 1.03290 1.19144 0.94844 0.88664 0.87970 1.20157 0.90323 1.30189 1.07246 0.88655 1.27146 1.06679 0.92865 0.93632 1.70226 1.38701 1.20724 1.07067 0.85004 0.74609 0.79277 0.79908 1.17409 1.18938 1.18931 1.68727 1.12972 1.19906 1.21754 1.23030 0.89704 0.94259 0.96675 1.21018 0.95752 1.02068 0.97613 0.91897 0.91099 0.91894 0.93990 0.90667 0.92753 0.92753 0.90664 0.93997 0.83543 0.83806 0.86170 0.85212 0.86718 0.90662 0.85265 0.87478 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.28 7.13 71.98 0.51 -1.77 16 2 C -0.03 -0.66 0.85 -52.93 -0.05 -0.71 16 3 C -0.14 -3.06 8.28 71.98 0.60 -2.46 16 4 C -0.14 -3.05 8.29 71.98 0.60 -2.46 16 5 C -0.06 -1.84 4.76 -19.90 -0.09 -1.93 16 6 C -0.15 -3.85 8.98 22.34 0.20 -3.65 16 7 C -0.11 -2.92 10.03 22.23 0.22 -2.69 16 8 C -0.16 -5.27 9.44 22.53 0.21 -5.06 16 9 C 0.00 -0.12 5.88 -20.03 -0.12 -0.24 16 10 C -0.27 -12.28 5.92 -19.76 -0.12 -12.40 16 11 C -0.04 -1.86 9.46 22.40 0.21 -1.65 16 12 C -0.29 -14.28 9.76 22.55 0.22 -14.06 16 13 C 0.22 12.25 6.55 40.17 0.26 12.51 16 14 C -0.45 -24.31 9.12 23.40 0.21 -24.10 16 15 H 0.10 4.76 7.85 -2.91 -0.02 4.74 16 16 C 0.02 1.00 5.50 85.31 0.47 1.46 16 17 N -0.75 -40.31 11.44 21.85 0.25 -40.06 16 18 Si 0.99 37.39 29.56 68.60 2.03 39.42 16 19 H -0.25 -9.01 7.11 99.48 0.71 -8.30 16 20 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 21 H -0.26 -9.59 7.11 99.48 0.71 -8.88 16 22 N -0.52 -29.97 7.83 -188.22 -1.47 -31.44 16 23 C 0.13 6.64 10.60 85.24 0.90 7.54 16 24 C -0.15 -5.18 8.10 22.53 0.18 -4.99 16 25 H 0.06 0.99 7.51 -2.38 -0.02 0.97 16 26 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.06 0.99 7.51 -2.39 -0.02 0.97 16 28 H 0.04 1.07 7.37 -2.39 -0.02 1.05 16 29 H 0.07 1.33 8.14 -2.39 -0.02 1.32 16 30 H 0.05 1.20 8.14 -2.38 -0.02 1.18 16 31 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 33 H 0.04 1.07 7.40 -2.39 -0.02 1.05 16 34 H 0.15 2.83 5.87 -2.91 -0.02 2.81 16 35 H 0.14 2.91 8.06 -2.91 -0.02 2.88 16 36 H 0.12 3.76 6.25 -2.91 -0.02 3.74 16 37 H 0.13 4.93 6.30 -2.91 -0.02 4.91 16 38 H 0.11 5.19 8.06 -2.91 -0.02 5.16 16 39 H 0.28 13.64 8.29 -92.71 -0.77 12.88 16 40 H 0.13 6.09 6.21 -2.91 -0.02 6.08 16 41 H 0.11 3.91 5.25 -2.91 -0.02 3.90 16 Total: -1.00 -63.98 331.44 6.26 -57.72 By element: Atomic # 1 Polarization: 29.98 SS G_CDS: 1.03 Total: 31.01 kcal Atomic # 6 Polarization: -61.08 SS G_CDS: 4.43 Total: -56.65 kcal Atomic # 7 Polarization: -70.28 SS G_CDS: -1.22 Total: -71.50 kcal Atomic # 14 Polarization: 37.39 SS G_CDS: 2.03 Total: 39.42 kcal Total: -63.98 6.26 -57.72 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241301651.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.467 kcal (2) G-P(sol) polarization free energy of solvation -63.985 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.744 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds