Wall clock time and date at job start Tue Mar 31 2020 05:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52993 * 109.47257 * 2 1 4 4 C 1.53001 * 109.47053 * 239.99480 * 2 1 3 5 5 C 1.50701 * 109.47171 * 119.99999 * 2 1 3 6 6 C 1.38349 * 119.93898 * 359.97438 * 5 2 1 7 7 C 1.38295 * 120.24294 * 180.02562 * 6 5 2 8 8 C 1.38042 * 120.11850 * 359.97438 * 7 6 5 9 9 C 1.39311 * 119.88043 * 0.02562 * 8 7 6 10 10 C 1.48416 * 120.12209 * 179.97438 * 9 8 7 11 11 C 1.39698 * 120.41037 * 180.02562 * 10 9 8 12 12 N 1.31916 * 121.15140 * 179.97438 * 11 10 9 13 13 C 1.31521 * 122.11772 * 0.02562 * 12 11 10 14 14 C 1.40769 * 120.66592 * 359.73814 * 13 12 11 15 15 C 1.41440 * 120.60359 * 180.29033 * 14 13 12 16 16 H 1.08002 * 120.00105 * 150.57480 * 15 14 13 17 17 C 1.39936 * 120.00355 * 330.56698 * 15 14 13 18 18 N 1.30823 * 120.00117 * 161.73816 * 17 15 14 19 19 Si 1.86804 * 119.99540 * 341.74043 * 17 15 14 20 20 H 1.48502 * 109.46960 * 95.41386 * 19 17 15 21 21 H 1.48504 * 109.46821 * 215.41028 * 19 17 15 22 22 H 1.48493 * 109.47207 * 335.41259 * 19 17 15 23 23 C 1.39135 * 120.40817 * 0.02562 * 10 9 8 24 24 C 1.38002 * 119.94300 * 180.25411 * 5 2 1 25 25 H 1.09007 * 109.47199 * 300.00487 * 1 2 3 26 26 H 1.08994 * 109.47391 * 60.00003 * 1 2 3 27 27 H 1.09001 * 109.47586 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47207 * 180.02562 * 3 2 1 29 29 H 1.09001 * 109.46995 * 299.99866 * 3 2 1 30 30 H 1.08994 * 109.47485 * 60.00249 * 3 2 1 31 31 H 1.08997 * 109.47599 * 300.00574 * 4 2 1 32 32 H 1.09001 * 109.46906 * 60.00314 * 4 2 1 33 33 H 1.09001 * 109.47369 * 179.97438 * 4 2 1 34 34 H 1.07995 * 119.87656 * 359.97438 * 6 5 2 35 35 H 1.08000 * 119.94223 * 180.02562 * 7 6 5 36 36 H 1.08002 * 120.05885 * 180.02562 * 8 7 6 37 37 H 1.07997 * 119.42564 * 0.02562 * 11 10 9 38 38 H 1.08004 * 119.66467 * 180.02562 * 13 12 11 39 39 H 0.97006 * 119.99717 * 180.02562 * 18 17 15 40 40 H 1.08000 * 120.95498 * 359.97438 * 23 10 9 41 41 H 1.07995 * 120.06065 * 0.02562 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 2.0323 -0.7104 1.2305 6 6 1.1322 -1.2353 2.1406 7 6 1.5862 -1.8879 3.2721 8 6 2.9415 -2.0195 3.4990 9 6 3.8524 -1.4929 2.5858 10 6 5.3107 -1.6308 2.8247 11 6 6.2294 -1.1046 1.9133 12 7 7.5286 -1.2184 2.1113 13 6 8.0245 -1.8274 3.1663 14 6 7.1737 -2.3838 4.1400 15 6 7.7085 -3.0332 5.2771 16 1 7.1583 -3.0350 6.2065 17 6 8.9502 -3.6734 5.1979 18 7 9.6105 -3.9576 6.2910 19 14 9.6650 -4.1223 3.5314 20 1 10.5956 -3.0534 3.0879 21 1 10.4019 -5.4071 3.6387 22 1 8.5658 -4.2631 2.5431 23 6 5.7797 -2.2858 3.9591 24 6 3.3893 -0.8312 1.4503 25 1 -0.3634 0.5139 0.8900 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4424 -0.0005 29 1 1.6767 1.9562 -0.8900 30 1 1.6768 1.9563 0.8899 31 1 1.6766 -1.7490 -1.2492 32 1 1.6766 -0.2076 -2.1392 33 1 3.1300 -0.7210 -1.2495 34 1 0.0710 -1.1342 1.9672 35 1 0.8793 -2.2961 3.9792 36 1 3.2951 -2.5298 4.3828 37 1 5.8697 -0.5951 1.0316 38 1 9.0953 -1.8973 3.2890 39 1 10.4715 -4.4011 6.2360 40 1 5.0950 -2.7030 4.6826 41 1 4.0912 -0.4169 0.7418 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241301680.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:40 Heat of formation + Delta-G solvation = 27.252948 kcal Electronic energy + Delta-G solvation = -21032.487027 eV Core-core repulsion = 18068.736424 eV Total energy + Delta-G solvation = -2963.750602 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -39.86223 -38.50491 -36.27089 -34.00133 -32.39093 -31.33174 -29.98589 -28.73185 -27.29693 -27.19610 -25.66856 -23.39376 -22.69923 -21.41203 -20.48494 -18.91567 -17.50223 -16.95373 -15.93030 -15.51181 -15.07815 -14.63654 -14.36965 -14.33181 -13.94740 -13.49216 -13.35987 -13.08855 -12.92077 -12.57399 -12.33080 -12.24145 -11.99323 -11.97446 -11.75860 -11.43902 -11.35819 -11.12271 -11.01854 -10.92930 -10.81859 -10.41241 -10.34599 -10.04501 -9.42176 -9.33598 -8.49985 -8.31317 -8.14292 -7.39172 -7.11141 -4.67176 1.26898 1.65618 2.47557 2.67493 3.05814 3.14284 3.24078 3.86143 4.07458 4.50124 4.56853 4.71518 4.93432 5.15536 5.20879 5.24987 5.34300 5.36948 5.46093 5.54765 5.62171 5.67638 5.72307 5.78007 5.81490 5.82327 5.94000 5.96566 6.06691 6.17456 6.19419 6.24223 6.31024 6.34659 6.51971 6.67961 6.79734 6.87002 6.87749 7.09460 7.26803 7.37582 7.41205 7.81148 8.10542 8.34805 8.55459 9.32533 9.89903 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.029998 B = 0.004015 C = 0.003722 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 933.178304 B = 6971.771033 C = 7520.802439 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.028 4.028 3 C -0.139 4.139 4 C -0.139 4.139 5 C -0.073 4.073 6 C -0.135 4.135 7 C -0.118 4.118 8 C -0.120 4.120 9 C -0.014 4.014 10 C -0.071 4.071 11 C -0.025 4.025 12 N -0.456 5.456 13 C -0.026 4.026 14 C 0.044 3.956 15 C -0.435 4.435 16 H 0.095 0.905 17 C 0.085 3.915 18 N -0.797 5.797 19 Si 0.907 3.093 20 H -0.263 1.263 21 H -0.285 1.285 22 H -0.247 1.247 23 C -0.162 4.162 24 C -0.110 4.110 25 H 0.057 0.943 26 H 0.055 0.945 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.056 0.944 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.120 0.880 35 H 0.117 0.883 36 H 0.125 0.875 37 H 0.127 0.873 38 H 0.131 0.869 39 H 0.289 0.711 40 H 0.114 0.886 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.409 4.525 -9.355 17.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.028 4.028 3 C -0.196 4.196 4 C -0.196 4.196 5 C -0.073 4.073 6 C -0.153 4.153 7 C -0.136 4.136 8 C -0.138 4.138 9 C -0.015 4.015 10 C -0.073 4.073 11 C -0.182 4.182 12 N -0.163 5.163 13 C -0.187 4.187 14 C 0.039 3.961 15 C -0.463 4.463 16 H 0.113 0.887 17 C -0.136 4.136 18 N -0.420 5.420 19 Si 0.733 3.267 20 H -0.189 1.189 21 H -0.212 1.212 22 H -0.170 1.170 23 C -0.187 4.187 24 C -0.128 4.128 25 H 0.076 0.924 26 H 0.074 0.926 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.075 0.925 31 H 0.075 0.925 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.138 0.862 35 H 0.136 0.864 36 H 0.142 0.858 37 H 0.144 0.856 38 H 0.148 0.852 39 H 0.100 0.900 40 H 0.132 0.868 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -13.640 4.767 -9.776 17.446 hybrid contribution -0.092 -0.698 0.222 0.739 sum -13.732 4.069 -9.554 17.216 Atomic orbital electron populations 1.21944 0.94457 1.01819 1.01655 1.19468 0.95387 0.95055 0.92904 1.21895 1.01540 0.94615 1.01577 1.21896 1.01534 1.00179 0.96017 1.19657 0.93171 0.98737 0.95743 1.21076 0.99241 1.00107 0.94869 1.21015 0.95378 0.99659 0.97546 1.21312 0.92734 1.00155 0.99554 1.18927 0.92539 0.96095 0.93946 1.19404 0.91181 0.99984 0.96754 1.21839 0.88161 1.07740 1.00502 1.66946 1.15097 1.13316 1.20933 1.22571 0.98739 1.03247 0.94178 1.18567 0.92058 0.92086 0.93364 1.19442 1.01674 1.28096 0.97128 0.88747 1.26159 0.95319 0.93237 0.98860 1.69674 1.12445 1.29398 1.30450 0.86375 0.80229 0.77861 0.82227 1.18916 1.21215 1.17023 1.21479 0.95077 1.04424 0.97738 1.21036 0.94683 0.99722 0.97372 0.92352 0.92633 0.92353 0.92172 0.92591 0.92534 0.92544 0.92591 0.92180 0.86220 0.86448 0.85751 0.85575 0.85197 0.90046 0.86807 0.85932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.25 7.13 37.16 0.26 -0.98 16 2 C -0.03 -0.30 0.85 -155.66 -0.13 -0.43 16 3 C -0.14 -1.40 8.28 37.15 0.31 -1.10 16 4 C -0.14 -1.41 8.29 37.16 0.31 -1.10 16 5 C -0.07 -0.97 4.76 -104.67 -0.50 -1.47 16 6 C -0.14 -1.72 8.97 -39.52 -0.35 -2.08 16 7 C -0.12 -1.61 10.03 -39.63 -0.40 -2.01 16 8 C -0.12 -1.94 9.43 -39.25 -0.37 -2.31 16 9 C -0.01 -0.26 5.88 -104.89 -0.62 -0.87 16 10 C -0.07 -1.51 5.88 -104.83 -0.62 -2.13 16 11 C -0.03 -0.55 10.60 -16.97 -0.18 -0.73 16 12 N -0.46 -11.10 10.32 -12.29 -0.13 -11.22 16 13 C -0.03 -0.65 8.37 -16.73 -0.14 -0.79 16 14 C 0.04 1.11 5.12 -106.71 -0.55 0.56 16 15 C -0.43 -11.39 9.60 -37.73 -0.36 -11.75 16 16 H 0.09 2.55 8.06 -52.49 -0.42 2.13 16 17 C 0.08 2.16 5.41 -17.35 -0.09 2.06 16 18 N -0.80 -20.45 13.93 55.55 0.77 -19.68 16 19 Si 0.91 20.46 24.52 -169.99 -4.17 16.29 16 20 H -0.26 -5.80 6.71 56.52 0.38 -5.43 16 21 H -0.29 -6.12 7.11 56.52 0.40 -5.72 16 22 H -0.25 -5.87 6.85 56.52 0.39 -5.48 16 23 C -0.16 -3.71 9.29 -38.24 -0.36 -4.06 16 24 C -0.11 -1.72 8.09 -39.26 -0.32 -2.03 16 25 H 0.06 0.50 7.51 -51.93 -0.39 0.11 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.50 7.51 -51.93 -0.39 0.11 16 28 H 0.06 0.65 7.37 -51.93 -0.38 0.26 16 29 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 33 H 0.06 0.65 7.40 -51.93 -0.38 0.26 16 34 H 0.12 1.24 5.88 -52.49 -0.31 0.94 16 35 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 36 H 0.12 1.98 6.26 -52.49 -0.33 1.65 16 37 H 0.13 2.40 6.20 -52.49 -0.33 2.07 16 38 H 0.13 3.22 4.69 -52.48 -0.25 2.98 16 39 H 0.29 6.69 8.30 -40.82 -0.34 6.35 16 40 H 0.11 2.40 6.31 -52.49 -0.33 2.06 16 41 H 0.12 1.82 5.25 -52.49 -0.28 1.55 16 LS Contribution 324.94 15.07 4.90 4.90 Total: -1.00 -27.56 324.94 -8.22 -35.78 By element: Atomic # 1 Polarization: 10.66 SS G_CDS: -5.49 Total: 5.16 kcal Atomic # 6 Polarization: -27.13 SS G_CDS: -4.10 Total: -31.23 kcal Atomic # 7 Polarization: -31.55 SS G_CDS: 0.65 Total: -30.90 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -4.17 Total: 16.29 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -27.56 -8.22 -35.78 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241301680.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.034 kcal (2) G-P(sol) polarization free energy of solvation -27.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.471 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.782 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.253 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds