Wall clock time and date at job start Tue Mar 31 2020 05:16:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52999 * 109.46835 * 2 1 4 4 C 1.52992 * 109.47193 * 239.99799 * 2 1 3 5 5 C 1.50699 * 109.46783 * 119.99629 * 2 1 3 6 6 C 1.38347 * 119.94280 * 0.02562 * 5 2 1 7 7 C 1.38301 * 120.24450 * 180.28020 * 6 5 2 8 8 C 1.38038 * 120.12357 * 359.48398 * 7 6 5 9 9 C 1.39328 * 119.87406 * 0.50936 * 8 7 6 10 10 C 1.48385 * 120.12156 * 179.72036 * 9 8 7 11 11 C 1.40038 * 120.82272 * 180.02562 * 10 9 8 12 12 C 1.38511 * 119.42263 * 179.97438 * 11 10 9 13 13 N 1.31474 * 121.14436 * 0.02562 * 12 11 10 14 14 C 1.33650 * 121.79601 * 359.97438 * 13 12 11 15 15 C 1.41430 * 119.77640 * 180.02562 * 14 13 12 16 16 H 1.08000 * 119.99601 * 180.02562 * 15 14 13 17 17 C 1.40032 * 120.00137 * 0.02562 * 15 14 13 18 18 N 1.30744 * 120.00113 * 0.02562 * 17 15 14 19 19 Si 1.86794 * 120.00001 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46962 * 60.00325 * 19 17 15 21 21 H 1.48498 * 109.47223 * 180.02562 * 19 17 15 22 22 H 1.48501 * 109.47489 * 300.00212 * 19 17 15 23 23 C 1.39307 * 120.81890 * 359.75184 * 10 9 8 24 24 C 1.37998 * 119.93526 * 180.02562 * 5 2 1 25 25 H 1.08998 * 109.47435 * 300.00135 * 1 2 3 26 26 H 1.08997 * 109.46920 * 60.00561 * 1 2 3 27 27 H 1.08999 * 109.46921 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46836 * 180.02562 * 3 2 1 29 29 H 1.09005 * 109.47033 * 299.99207 * 3 2 1 30 30 H 1.08990 * 109.47790 * 59.99999 * 3 2 1 31 31 H 1.09007 * 109.47348 * 299.99747 * 4 2 1 32 32 H 1.08997 * 109.47481 * 59.99984 * 4 2 1 33 33 H 1.09004 * 109.47027 * 180.02562 * 4 2 1 34 34 H 1.08002 * 119.87331 * 359.97438 * 6 5 2 35 35 H 1.07998 * 119.93830 * 179.72411 * 7 6 5 36 36 H 1.07993 * 120.06510 * 180.28478 * 8 7 6 37 37 H 1.07998 * 120.28531 * 359.95652 * 11 10 9 38 38 H 1.07996 * 119.42279 * 179.97438 * 12 11 10 39 39 H 0.96995 * 120.00152 * 180.02562 * 18 17 15 40 40 H 1.08002 * 120.58784 * 0.02562 * 23 10 9 41 41 H 1.07998 * 120.06297 * 359.95974 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0401 -0.7213 -1.2491 5 6 2.0323 -0.7103 1.2305 6 6 1.1322 -1.2360 2.1401 7 6 1.5862 -1.8841 3.2744 8 6 2.9414 -2.0190 3.4995 9 6 3.8524 -1.4916 2.5868 10 6 5.3104 -1.6281 2.8264 11 6 6.2390 -1.1032 1.9191 12 6 7.5932 -1.2467 2.1718 13 7 8.0220 -1.8677 3.2484 14 6 7.1778 -2.3865 4.1453 15 6 7.6858 -3.0454 5.2890 16 1 7.0069 -3.4663 6.0158 17 6 9.0691 -3.1520 5.4790 18 7 9.8910 -2.6420 4.5993 19 14 9.7400 -4.0216 6.9899 20 1 9.2667 -5.4292 7.0018 21 1 11.2245 -3.9984 6.9561 22 1 9.2624 -3.3283 8.2131 23 6 5.7893 -2.2767 3.9625 24 6 3.3893 -0.8352 1.4479 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9563 -0.8901 30 1 1.6767 1.9564 0.8899 31 1 1.6768 -1.7490 -1.2491 32 1 1.6768 -0.2075 -2.1392 33 1 3.1301 -0.7216 -1.2489 34 1 0.0710 -1.1356 1.9662 35 1 0.8792 -2.2887 3.9834 36 1 3.2949 -2.5293 4.3832 37 1 5.9020 -0.5912 1.0299 38 1 8.3093 -0.8423 1.4718 39 1 10.8492 -2.7162 4.7307 40 1 5.1052 -2.6916 4.6879 41 1 4.0911 -0.4250 0.7369 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241301888.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:57 Heat of formation + Delta-G solvation = 36.495442 kcal Electronic energy + Delta-G solvation = -20923.603793 eV Core-core repulsion = 17960.253976 eV Total energy + Delta-G solvation = -2963.349818 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.73465 -38.08502 -36.17696 -33.69687 -32.13663 -30.38253 -29.64105 -28.73886 -27.25866 -27.17656 -25.74214 -23.17416 -22.56985 -21.17222 -20.41049 -18.84534 -17.28505 -16.61330 -15.53079 -15.02554 -14.91719 -14.47674 -14.28935 -14.05580 -13.84763 -13.49261 -13.27302 -12.80846 -12.71590 -12.33089 -12.31880 -11.97833 -11.85515 -11.73771 -11.71735 -11.32601 -11.19751 -11.09297 -10.96834 -10.82481 -10.56849 -10.40648 -10.20603 -9.78615 -9.54414 -9.05978 -8.41839 -7.67939 -7.58931 -7.44344 -6.41647 -4.54683 1.44156 1.73484 2.75453 3.07466 3.07517 3.09593 3.20889 3.93400 4.26045 4.62162 4.76530 4.77490 4.98018 5.24371 5.28282 5.30886 5.48388 5.53755 5.58272 5.71211 5.71557 5.79484 5.85045 5.85064 5.90895 5.99466 6.00669 6.06972 6.21780 6.26693 6.28196 6.35035 6.54269 6.68720 6.72555 6.81332 6.90009 7.00492 7.15567 7.28991 7.34779 7.53152 7.72210 7.99492 8.20028 8.63499 8.89236 10.09480 10.30431 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.032692 B = 0.003666 C = 0.003373 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 856.268459 B = 7635.031794 C = 8300.242806 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.028 4.028 3 C -0.139 4.139 4 C -0.139 4.139 5 C -0.076 4.076 6 C -0.136 4.136 7 C -0.120 4.120 8 C -0.118 4.118 9 C -0.016 4.016 10 C -0.002 4.002 11 C -0.304 4.304 12 C 0.124 3.876 13 N -0.483 5.483 14 C 0.255 3.745 15 C -0.433 4.433 16 H 0.083 0.917 17 C 0.069 3.931 18 N -0.716 5.716 19 Si 0.908 3.092 20 H -0.265 1.265 21 H -0.277 1.277 22 H -0.265 1.265 23 C -0.253 4.253 24 C -0.108 4.108 25 H 0.057 0.943 26 H 0.054 0.946 27 H 0.057 0.943 28 H 0.059 0.941 29 H 0.055 0.945 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.059 0.941 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.124 0.876 37 H 0.096 0.904 38 H 0.119 0.881 39 H 0.273 0.727 40 H 0.102 0.898 41 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.695 3.686 -6.416 15.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.028 4.028 3 C -0.196 4.196 4 C -0.196 4.196 5 C -0.076 4.076 6 C -0.154 4.154 7 C -0.138 4.138 8 C -0.136 4.136 9 C -0.016 4.016 10 C -0.008 4.008 11 C -0.327 4.327 12 C -0.041 4.041 13 N -0.196 5.196 14 C 0.130 3.870 15 C -0.464 4.464 16 H 0.101 0.899 17 C -0.156 4.156 18 N -0.337 5.337 19 Si 0.732 3.268 20 H -0.189 1.189 21 H -0.202 1.202 22 H -0.189 1.189 23 C -0.276 4.276 24 C -0.126 4.126 25 H 0.076 0.924 26 H 0.073 0.927 27 H 0.076 0.924 28 H 0.078 0.922 29 H 0.074 0.926 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.137 0.863 35 H 0.135 0.865 36 H 0.142 0.858 37 H 0.114 0.886 38 H 0.137 0.863 39 H 0.085 0.915 40 H 0.120 0.880 41 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -12.549 3.615 -6.285 14.493 hybrid contribution -0.568 -0.303 0.521 0.828 sum -13.118 3.312 -5.764 14.706 Atomic orbital electron populations 1.21941 0.94503 1.01790 1.01601 1.19459 0.95336 0.95035 0.92938 1.21891 1.01533 0.94647 1.01508 1.21891 1.01532 1.00156 0.96003 1.19660 0.93238 0.98904 0.95804 1.21058 0.99152 1.00294 0.94927 1.21007 0.95392 0.99903 0.97542 1.21323 0.92663 1.00063 0.99591 1.19059 0.93052 0.95764 0.93724 1.18609 0.89833 0.97320 0.95082 1.21327 0.94488 1.14188 1.02672 1.22453 0.92275 0.94465 0.94932 1.68714 1.36807 1.11888 1.02157 1.18546 0.87043 0.89552 0.91849 1.19589 0.91930 1.30344 1.04528 0.89887 1.26063 0.97339 0.94842 0.97378 1.70124 1.03617 1.29213 1.30758 0.86390 0.78101 0.80538 0.81812 1.18912 1.20195 1.18917 1.21868 0.96703 1.09612 0.99412 1.21063 0.94541 0.99562 0.97396 0.92376 0.92671 0.92373 0.92199 0.92634 0.92568 0.92574 0.92629 0.92199 0.86307 0.86550 0.85791 0.88601 0.86326 0.91539 0.87971 0.85974 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.32 7.13 37.16 0.27 -1.05 16 2 C -0.03 -0.31 0.85 -155.66 -0.13 -0.44 16 3 C -0.14 -1.49 8.28 37.16 0.31 -1.18 16 4 C -0.14 -1.49 8.29 37.15 0.31 -1.18 16 5 C -0.08 -1.08 4.76 -104.67 -0.50 -1.58 16 6 C -0.14 -1.85 8.97 -39.52 -0.35 -2.21 16 7 C -0.12 -1.75 10.03 -39.63 -0.40 -2.15 16 8 C -0.12 -2.05 9.45 -39.25 -0.37 -2.42 16 9 C -0.02 -0.31 5.88 -104.89 -0.62 -0.92 16 10 C 0.00 -0.06 5.91 -104.65 -0.62 -0.67 16 11 C -0.30 -6.84 9.52 -38.81 -0.37 -7.21 16 12 C 0.12 3.02 11.17 -17.60 -0.20 2.83 16 13 N -0.48 -13.43 7.85 -11.20 -0.09 -13.52 16 14 C 0.25 7.01 6.55 -85.02 -0.56 6.45 16 15 C -0.43 -11.61 9.14 -37.70 -0.34 -11.96 16 16 H 0.08 2.07 7.85 -52.49 -0.41 1.65 16 17 C 0.07 1.77 5.50 -17.34 -0.10 1.67 16 18 N -0.72 -19.17 11.46 55.55 0.64 -18.53 16 19 Si 0.91 18.59 29.56 -169.99 -5.02 13.57 16 20 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 21 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 22 H -0.26 -5.34 7.11 56.52 0.40 -4.93 16 23 C -0.25 -6.25 9.22 -38.34 -0.35 -6.60 16 24 C -0.11 -1.80 8.11 -39.25 -0.32 -2.12 16 25 H 0.06 0.53 7.51 -51.93 -0.39 0.14 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.02 16 27 H 0.06 0.53 7.51 -51.93 -0.39 0.14 16 28 H 0.06 0.69 7.38 -51.93 -0.38 0.30 16 29 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 30 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 32 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 33 H 0.06 0.69 7.38 -51.93 -0.38 0.30 16 34 H 0.12 1.32 5.88 -52.49 -0.31 1.01 16 35 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 36 H 0.12 2.12 6.29 -52.49 -0.33 1.79 16 37 H 0.10 1.89 6.32 -52.49 -0.33 1.55 16 38 H 0.12 2.56 8.06 -52.49 -0.42 2.14 16 39 H 0.27 6.63 8.29 -40.82 -0.34 6.30 16 40 H 0.10 2.32 6.33 -52.49 -0.33 1.99 16 41 H 0.12 1.98 5.32 -52.49 -0.28 1.70 16 LS Contribution 331.83 15.07 5.00 5.00 Total: -1.00 -29.24 331.83 -9.45 -38.69 By element: Atomic # 1 Polarization: 11.17 SS G_CDS: -5.63 Total: 5.54 kcal Atomic # 6 Polarization: -26.40 SS G_CDS: -4.34 Total: -30.74 kcal Atomic # 7 Polarization: -32.60 SS G_CDS: 0.55 Total: -32.05 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.02 Total: 13.57 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.24 -9.45 -38.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241301888.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.186 kcal (2) G-P(sol) polarization free energy of solvation -29.239 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.947 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.691 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds