Wall clock time and date at job start Tue Mar 31 2020 05:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 C 1.52999 * 109.47051 * 2 1 4 4 C 1.52992 * 109.46843 * 239.99807 * 2 1 3 5 5 C 1.50701 * 109.47007 * 119.99896 * 2 1 3 6 6 C 1.38431 * 119.92550 * 0.02562 * 5 2 1 7 7 C 1.38382 * 120.30785 * 180.29776 * 6 5 2 8 8 C 1.37941 * 120.14957 * 359.44552 * 7 6 5 9 9 C 1.39665 * 119.84650 * 0.55206 * 8 7 6 10 10 C 1.47816 * 120.15367 * 179.74602 * 9 8 7 11 11 C 1.39674 * 120.65363 * 129.97573 * 10 9 8 12 12 C 1.38388 * 118.47934 * 180.02562 * 11 10 9 13 13 C 1.39055 * 119.72435 * 0.02562 * 12 11 10 14 14 N 1.31273 * 121.34017 * 359.97438 * 13 12 11 15 15 C 1.33705 * 121.63769 * 359.70211 * 14 13 12 16 16 C 1.40816 * 119.93962 * 180.28759 * 15 14 13 17 17 H 1.08003 * 119.99502 * 180.29713 * 16 15 14 18 18 C 1.40152 * 120.00213 * 0.29573 * 16 15 14 19 19 N 1.30685 * 119.99978 * 359.97438 * 18 16 15 20 20 Si 1.86798 * 119.99853 * 179.97438 * 18 16 15 21 21 H 1.48504 * 109.47206 * 89.99771 * 20 18 16 22 22 H 1.48500 * 109.47137 * 209.99890 * 20 18 16 23 23 H 1.48506 * 109.47152 * 329.99928 * 20 18 16 24 24 C 1.37897 * 119.92112 * 180.02562 * 5 2 1 25 25 H 1.09008 * 109.46853 * 300.00190 * 1 2 3 26 26 H 1.08993 * 109.47335 * 60.00076 * 1 2 3 27 27 H 1.08999 * 109.46849 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47326 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.47114 * 299.99896 * 3 2 1 30 30 H 1.09000 * 109.47141 * 60.00179 * 3 2 1 31 31 H 1.08994 * 109.47490 * 299.99719 * 4 2 1 32 32 H 1.09001 * 109.47193 * 60.00183 * 4 2 1 33 33 H 1.09002 * 109.47155 * 179.97438 * 4 2 1 34 34 H 1.08002 * 119.84297 * 0.02562 * 6 5 2 35 35 H 1.07991 * 119.92576 * 179.71869 * 7 6 5 36 36 H 1.07998 * 120.07425 * 180.27432 * 8 7 6 37 37 H 1.08002 * 120.75779 * 0.02691 * 11 10 9 38 38 H 1.07998 * 120.13738 * 179.97438 * 12 11 10 39 39 H 1.07999 * 119.33147 * 179.97438 * 13 12 11 40 40 H 0.97000 * 120.00387 * 179.97438 * 19 18 16 41 41 H 1.07992 * 120.07706 * 0.02562 * 24 5 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 2.0324 -0.7104 1.2305 6 6 1.1314 -1.2363 2.1404 7 6 1.5839 -1.8848 3.2761 8 6 2.9377 -2.0213 3.5029 9 6 3.8523 -1.4931 2.5891 10 6 5.3045 -1.6305 2.8283 11 6 6.1486 -2.1148 1.8264 12 6 7.5008 -2.2256 2.0991 13 6 7.9843 -1.8575 3.3499 14 7 7.1828 -1.4034 4.2852 15 6 5.8688 -1.2684 4.0780 16 6 5.0428 -0.7718 5.1047 17 1 3.9806 -0.6669 4.9399 18 6 5.5991 -0.4139 6.3403 19 7 6.8843 -0.5414 6.5398 20 14 4.5034 0.2454 7.7019 21 1 4.0109 -0.8837 8.5314 22 1 5.2804 1.1824 8.5525 23 1 3.3478 0.9615 7.1044 24 6 3.3885 -0.8350 1.4474 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 0.0005 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9563 0.8900 31 1 1.6767 -1.7489 -1.2492 32 1 1.6766 -0.2074 -2.1392 33 1 3.1300 -0.7209 -1.2495 34 1 0.0704 -1.1362 1.9654 35 1 0.8756 -2.2888 3.9841 36 1 3.2895 -2.5315 4.3874 37 1 5.7550 -2.3962 0.8608 38 1 8.1776 -2.5972 1.3440 39 1 9.0406 -1.9470 3.5561 40 1 7.2694 -0.2934 7.3948 41 1 4.0902 -0.4239 0.7369 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241302312.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:43 Heat of formation + Delta-G solvation = 36.381735 kcal Electronic energy + Delta-G solvation = -21572.750971 eV Core-core repulsion = 18609.396222 eV Total energy + Delta-G solvation = -2963.354749 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.44614 -38.05841 -35.87463 -33.72175 -31.94114 -30.36303 -29.64360 -28.45866 -27.11297 -27.05681 -25.70111 -22.59394 -22.45502 -21.19110 -20.32376 -18.46404 -17.55705 -16.35106 -15.65368 -14.72835 -14.68424 -14.43719 -14.15633 -14.08067 -13.93119 -13.38708 -13.07471 -12.67140 -12.44750 -12.17437 -12.07979 -11.85260 -11.68121 -11.56510 -11.42459 -11.24630 -11.23232 -11.10064 -10.84873 -10.78189 -10.52448 -10.22663 -10.08448 -9.79275 -9.44965 -8.56856 -8.10373 -7.96211 -7.63014 -7.27128 -6.48824 -4.56588 1.90897 2.07800 2.73567 3.02116 3.04859 3.08814 3.18742 3.88947 4.46924 4.68734 4.83601 4.95503 5.14997 5.48700 5.59384 5.61488 5.64800 5.72032 5.85420 5.85839 5.87648 5.95755 5.99110 6.02053 6.07109 6.13830 6.14844 6.24041 6.32412 6.42863 6.45138 6.51365 6.71558 6.76212 6.84820 7.00937 7.13481 7.19234 7.31346 7.37519 7.54752 7.71579 7.79482 8.00150 8.19962 8.57311 8.86839 10.03146 10.21720 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.015876 B = 0.005987 C = 0.004818 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1763.234980 B = 4675.947819 C = 5810.187390 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.027 4.027 3 C -0.138 4.138 4 C -0.137 4.137 5 C -0.076 4.076 6 C -0.149 4.149 7 C -0.123 4.123 8 C -0.113 4.113 9 C 0.029 3.971 10 C -0.236 4.236 11 C -0.033 4.033 12 C -0.322 4.322 13 C 0.132 3.868 14 N -0.483 5.483 15 C 0.268 3.732 16 C -0.420 4.420 17 H 0.095 0.905 18 C 0.068 3.932 19 N -0.708 5.708 20 Si 0.903 3.097 21 H -0.267 1.267 22 H -0.275 1.275 23 H -0.259 1.259 24 C -0.123 4.123 25 H 0.057 0.943 26 H 0.051 0.949 27 H 0.056 0.944 28 H 0.058 0.942 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.054 0.946 32 H 0.052 0.948 33 H 0.057 0.943 34 H 0.113 0.887 35 H 0.111 0.889 36 H 0.125 0.875 37 H 0.095 0.905 38 H 0.094 0.906 39 H 0.118 0.882 40 H 0.274 0.726 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.154 0.837 -7.876 12.105 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.027 4.027 3 C -0.195 4.195 4 C -0.194 4.194 5 C -0.076 4.076 6 C -0.167 4.167 7 C -0.141 4.141 8 C -0.131 4.131 9 C 0.028 3.972 10 C -0.241 4.241 11 C -0.058 4.058 12 C -0.345 4.345 13 C -0.037 4.037 14 N -0.194 5.194 15 C 0.145 3.855 16 C -0.450 4.450 17 H 0.113 0.887 18 C -0.158 4.158 19 N -0.329 5.329 20 Si 0.727 3.273 21 H -0.192 1.192 22 H -0.200 1.200 23 H -0.183 1.183 24 C -0.142 4.142 25 H 0.076 0.924 26 H 0.071 0.929 27 H 0.075 0.925 28 H 0.077 0.923 29 H 0.071 0.929 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.071 0.929 33 H 0.076 0.924 34 H 0.131 0.869 35 H 0.129 0.871 36 H 0.143 0.857 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.136 0.864 40 H 0.086 0.914 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -8.682 1.132 -6.856 11.120 hybrid contribution -0.597 0.021 -0.201 0.630 sum -9.279 1.152 -7.057 11.714 Atomic orbital electron populations 1.21928 0.94716 1.01655 1.01401 1.19432 0.95151 0.94971 0.93116 1.21879 1.01492 0.94806 1.01306 1.21871 1.01379 1.00066 0.96066 1.19531 0.93317 0.99156 0.95617 1.20945 0.98695 1.01697 0.95380 1.20967 0.95557 1.00266 0.97329 1.21398 0.92229 0.99907 0.99602 1.18697 0.92702 0.93374 0.92430 1.19381 0.91273 1.16103 0.97351 1.20875 0.93215 0.95533 0.96155 1.21213 0.95485 1.17983 0.99831 1.22598 0.98623 0.92902 0.89565 1.68766 1.03676 1.16774 1.30207 1.18527 0.88847 0.88769 0.89403 1.19843 0.95906 1.34045 0.95172 0.88746 1.26155 0.95202 0.94566 0.99922 1.70112 1.11501 1.28473 1.22764 0.86378 0.80936 0.79574 0.80444 1.19178 1.19978 1.18262 1.21032 0.94212 1.00816 0.98112 0.92392 0.92950 0.92461 0.92281 0.92929 0.92551 0.92688 0.92901 0.92366 0.86879 0.87099 0.85744 0.88654 0.88753 0.86424 0.91438 0.87081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 7.13 37.16 0.26 -1.28 16 2 C -0.03 -0.35 0.85 -155.66 -0.13 -0.48 16 3 C -0.14 -1.74 8.29 37.16 0.31 -1.43 16 4 C -0.14 -1.63 8.28 37.15 0.31 -1.33 16 5 C -0.08 -1.24 4.76 -104.67 -0.50 -1.73 16 6 C -0.15 -2.38 8.98 -39.46 -0.35 -2.73 16 7 C -0.12 -2.12 10.03 -39.64 -0.40 -2.51 16 8 C -0.11 -2.28 7.57 -39.16 -0.30 -2.58 16 9 C 0.03 0.61 5.02 -104.90 -0.53 0.09 16 10 C -0.24 -5.70 5.53 -104.08 -0.58 -6.27 16 11 C -0.03 -0.75 9.67 -38.99 -0.38 -1.13 16 12 C -0.32 -7.18 10.10 -39.22 -0.40 -7.57 16 13 C 0.13 3.17 11.17 -17.49 -0.20 2.97 16 14 N -0.48 -13.18 7.85 -10.91 -0.09 -13.27 16 15 C 0.27 7.19 6.56 -84.71 -0.56 6.63 16 16 C -0.42 -10.97 7.97 -37.89 -0.30 -11.27 16 17 H 0.09 2.36 5.25 -52.48 -0.28 2.08 16 18 C 0.07 1.71 5.50 -17.32 -0.10 1.61 16 19 N -0.71 -18.54 11.46 55.56 0.64 -17.90 16 20 Si 0.90 18.46 29.56 -169.99 -5.02 13.43 16 21 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 22 H -0.27 -5.49 7.11 56.52 0.40 -5.09 16 23 H -0.26 -5.27 7.11 56.52 0.40 -4.87 16 24 C -0.12 -2.32 8.21 -39.16 -0.32 -2.64 16 25 H 0.06 0.64 7.51 -51.92 -0.39 0.25 16 26 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 27 H 0.06 0.61 7.50 -51.93 -0.39 0.22 16 28 H 0.06 0.80 7.38 -51.93 -0.38 0.41 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 31 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.73 7.38 -51.93 -0.38 0.35 16 34 H 0.11 1.52 5.87 -52.49 -0.31 1.21 16 35 H 0.11 1.62 8.06 -52.49 -0.42 1.20 16 36 H 0.12 2.61 7.26 -52.49 -0.38 2.23 16 37 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 38 H 0.09 1.83 8.06 -52.49 -0.42 1.41 16 39 H 0.12 2.51 8.06 -52.49 -0.42 2.08 16 40 H 0.27 6.50 8.29 -40.82 -0.34 6.16 16 41 H 0.11 2.03 7.08 -52.49 -0.37 1.66 16 LS Contribution 332.29 15.07 5.01 5.01 Total: -1.00 -28.23 332.29 -9.43 -37.66 By element: Atomic # 1 Polarization: 12.55 SS G_CDS: -5.82 Total: 6.73 kcal Atomic # 6 Polarization: -27.52 SS G_CDS: -4.14 Total: -31.66 kcal Atomic # 7 Polarization: -31.72 SS G_CDS: 0.55 Total: -31.17 kcal Atomic # 14 Polarization: 18.46 SS G_CDS: -5.02 Total: 13.43 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.23 -9.43 -37.66 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241302312.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.045 kcal (2) G-P(sol) polarization free energy of solvation -28.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.814 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.663 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds