Wall clock time and date at job start Tue Mar 31 2020 05:16:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52996 * 109.47476 * 2 1 4 4 C 1.53002 * 109.46987 * 120.00119 * 2 1 3 5 5 C 1.50701 * 109.47175 * 174.99725 * 4 2 1 6 6 C 1.38405 * 119.84723 * 89.99373 * 5 4 2 7 7 C 1.37918 * 120.15500 * 179.97438 * 6 5 4 8 8 C 1.39673 * 119.84173 * 0.02562 * 7 6 5 9 9 C 1.47822 * 120.14965 * 179.97438 * 8 7 6 10 10 N 1.32580 * 119.98765 * 316.27161 * 9 8 7 11 11 C 1.31741 * 121.72015 * 179.97438 * 10 9 8 12 12 C 1.38870 * 121.50650 * 0.02562 * 11 10 9 13 13 C 1.36886 * 119.79600 * 359.97438 * 12 11 10 14 14 C 1.41121 * 118.39778 * 0.26762 * 13 12 11 15 15 C 1.40881 * 120.71973 * 179.72416 * 14 13 12 16 16 H 1.08007 * 119.99910 * 150.47246 * 15 14 13 17 17 C 1.40070 * 120.00434 * 330.47698 * 15 14 13 18 18 N 1.30767 * 120.00494 * 163.31467 * 17 15 14 19 19 Si 1.86803 * 119.99735 * 343.30979 * 17 15 14 20 20 H 1.48502 * 109.47107 * 90.30772 * 19 17 15 21 21 H 1.48493 * 109.47397 * 210.30703 * 19 17 15 22 22 H 1.48499 * 109.46977 * 330.31101 * 19 17 15 23 23 C 1.39671 * 119.70118 * 0.25606 * 8 7 6 24 24 C 1.37923 * 119.84522 * 359.48340 * 23 8 7 25 25 H 1.08993 * 109.46752 * 300.00090 * 1 2 3 26 26 H 1.08997 * 109.46668 * 60.00285 * 1 2 3 27 27 H 1.08993 * 109.46845 * 180.02562 * 1 2 3 28 28 H 1.08999 * 109.46897 * 239.99488 * 2 1 3 29 29 H 1.09011 * 109.46904 * 299.99810 * 3 2 1 30 30 H 1.08999 * 109.47476 * 59.99842 * 3 2 1 31 31 H 1.08995 * 109.47463 * 180.02562 * 3 2 1 32 32 H 1.08991 * 109.47382 * 54.99756 * 4 2 1 33 33 H 1.08999 * 109.46595 * 294.99317 * 4 2 1 34 34 H 1.07999 * 119.92114 * 0.02562 * 6 5 4 35 35 H 1.07993 * 120.08070 * 180.02562 * 7 6 5 36 36 H 1.08006 * 119.24931 * 180.02562 * 11 10 9 37 37 H 1.08004 * 120.10305 * 179.97438 * 12 11 10 38 38 H 1.08005 * 120.79843 * 179.97438 * 13 12 11 39 39 H 0.96993 * 120.00242 * 180.02562 * 18 17 15 40 40 H 1.07999 * 120.07889 * 179.72618 * 23 8 7 41 41 H 1.07997 * 119.92661 * 180.25051 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2493 5 6 3.5419 -0.8295 1.1889 6 6 4.3271 0.1742 1.7290 7 6 5.7022 0.0814 1.6777 8 6 6.3021 -1.0286 1.0785 9 6 7.7753 -1.1347 1.0193 10 7 8.5030 -0.0777 0.6864 11 6 9.8177 -0.1338 0.6236 12 6 10.5082 -1.3058 0.9030 13 6 9.8181 -2.4349 1.2533 14 6 8.4098 -2.3690 1.3136 15 6 7.6506 -3.5031 1.6632 16 1 6.7000 -3.3839 2.1619 17 6 8.1285 -4.7854 1.3640 18 7 7.6128 -5.8304 1.9572 19 14 9.5027 -5.0025 0.1174 20 1 10.8140 -4.9534 0.8126 21 1 9.3517 -6.3141 -0.5624 22 1 9.4348 -3.9126 -0.8890 23 6 5.5036 -2.0349 0.5303 24 6 4.1297 -1.9318 0.5933 25 1 -0.3632 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.6768 1.9563 -0.8901 30 1 1.6768 1.9563 0.8899 31 1 3.1301 1.4424 -0.0005 32 1 1.6054 -1.7197 1.2952 33 1 1.7517 -0.1582 2.1369 34 1 3.8619 1.0317 2.1923 35 1 6.3137 0.8650 2.0998 36 1 10.3712 0.7519 0.3484 37 1 11.5865 -1.3264 0.8440 38 1 10.3387 -3.3552 1.4736 39 1 7.9440 -6.7182 1.7503 40 1 5.9610 -2.8937 0.0616 41 1 3.5111 -2.7112 0.1734 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241323978.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:12 Heat of formation + Delta-G solvation = 22.906749 kcal Electronic energy + Delta-G solvation = -21200.167188 eV Core-core repulsion = 18236.228120 eV Total energy + Delta-G solvation = -2963.939068 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.28644 -38.23366 -35.88972 -34.13180 -32.00685 -31.45776 -30.23352 -29.42444 -27.10006 -26.40252 -25.20084 -22.64183 -21.78725 -21.31429 -20.26537 -19.66267 -17.59848 -16.60738 -15.73078 -15.20762 -15.00617 -14.61340 -14.19770 -14.07178 -13.95206 -13.58225 -13.14859 -12.86293 -12.70319 -12.51165 -12.24400 -12.15976 -11.92866 -11.91334 -11.59142 -11.43716 -11.16610 -10.93292 -10.72911 -10.59941 -10.48220 -10.27949 -10.22757 -9.89765 -9.58117 -8.66654 -8.29704 -8.22281 -8.07712 -7.38506 -7.16157 -4.65469 1.74206 2.17181 2.44471 2.67996 2.95319 3.06769 3.16224 3.78589 4.36220 4.49637 4.94159 4.98485 5.06162 5.29639 5.41432 5.45806 5.54635 5.65101 5.66892 5.76467 5.78121 5.87803 5.93709 5.97363 6.04136 6.10808 6.15976 6.20207 6.24455 6.35306 6.40837 6.47602 6.52544 6.67785 6.77382 6.81360 6.93500 7.20702 7.25501 7.28351 7.44686 7.57323 7.71914 7.77298 8.12288 8.35492 8.52489 9.34176 9.82889 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.020199 B = 0.004939 C = 0.004201 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1385.892269 B = 5667.340226 C = 6664.138902 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.092 4.092 3 C -0.150 4.150 4 C -0.070 4.070 5 C -0.099 4.099 6 C -0.125 4.125 7 C -0.106 4.106 8 C 0.012 3.988 9 C 0.035 3.965 10 N -0.443 5.443 11 C -0.042 4.042 12 C -0.121 4.121 13 C -0.213 4.213 14 C 0.061 3.939 15 C -0.421 4.421 16 H 0.104 0.896 17 C 0.083 3.917 18 N -0.789 5.789 19 Si 0.911 3.089 20 H -0.266 1.266 21 H -0.287 1.287 22 H -0.246 1.246 23 C -0.086 4.086 24 C -0.125 4.125 25 H 0.052 0.948 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.048 0.952 30 H 0.050 0.950 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.065 0.935 34 H 0.110 0.890 35 H 0.115 0.885 36 H 0.126 0.874 37 H 0.104 0.896 38 H 0.112 0.888 39 H 0.290 0.710 40 H 0.131 0.869 41 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.636 5.745 -2.735 9.939 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.207 4.207 4 C -0.107 4.107 5 C -0.100 4.100 6 C -0.143 4.143 7 C -0.125 4.125 8 C 0.011 3.989 9 C -0.106 4.106 10 N -0.150 5.150 11 C -0.200 4.200 12 C -0.141 4.141 13 C -0.238 4.238 14 C 0.056 3.944 15 C -0.449 4.449 16 H 0.122 0.878 17 C -0.139 4.139 18 N -0.411 5.411 19 Si 0.737 3.263 20 H -0.192 1.192 21 H -0.214 1.214 22 H -0.170 1.170 23 C -0.105 4.105 24 C -0.143 4.143 25 H 0.071 0.929 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.067 0.933 30 H 0.069 0.931 31 H 0.084 0.916 32 H 0.085 0.915 33 H 0.084 0.916 34 H 0.128 0.872 35 H 0.133 0.867 36 H 0.143 0.857 37 H 0.122 0.878 38 H 0.130 0.870 39 H 0.100 0.900 40 H 0.149 0.851 41 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -8.090 6.242 -2.852 10.608 hybrid contribution 1.295 -1.152 -0.168 1.741 sum -6.795 5.089 -3.020 9.011 Atomic orbital electron populations 1.21854 0.95621 1.01479 1.01424 1.21084 0.94845 0.96628 0.98448 1.21910 1.02240 0.95619 1.00913 1.20589 0.91954 1.00547 0.97658 1.19696 0.94670 0.95237 1.00376 1.20747 0.93416 0.98455 1.01697 1.21183 0.94018 0.97722 0.99548 1.18373 0.90849 0.93615 0.96019 1.19535 0.91388 0.90628 1.09017 1.67079 1.07515 1.30611 1.09804 1.21683 0.89896 0.97042 1.11411 1.21359 0.99074 0.94583 0.99053 1.21210 0.94377 0.98389 1.09823 1.18437 0.91830 0.93886 0.90233 1.19552 1.06332 0.88397 1.30588 0.87827 1.26241 0.96535 0.95464 0.95624 1.69641 1.37473 1.00481 1.33500 0.86358 0.80346 0.78143 0.81459 1.19243 1.21381 1.16978 1.21404 0.92674 0.98500 0.97928 1.20822 0.94667 0.97607 1.01187 0.92876 0.92958 0.92835 0.91148 0.93333 0.93066 0.91631 0.91516 0.91638 0.87167 0.86665 0.85655 0.87825 0.87038 0.89965 0.85076 0.86958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.38 9.19 37.16 0.34 -1.04 16 2 C -0.09 -1.04 2.91 -90.62 -0.26 -1.31 16 3 C -0.15 -1.70 8.75 37.16 0.33 -1.38 16 4 C -0.07 -0.89 4.83 -27.88 -0.13 -1.02 16 5 C -0.10 -1.60 4.72 -104.50 -0.49 -2.09 16 6 C -0.13 -2.09 7.93 -39.64 -0.31 -2.40 16 7 C -0.11 -2.07 9.66 -39.16 -0.38 -2.45 16 8 C 0.01 0.27 5.26 -104.91 -0.55 -0.28 16 9 C 0.04 0.85 6.43 -82.24 -0.53 0.32 16 10 N -0.44 -10.46 10.15 -9.17 -0.09 -10.55 16 11 C -0.04 -0.91 11.16 -17.36 -0.19 -1.11 16 12 C -0.12 -2.57 10.03 -39.84 -0.40 -2.97 16 13 C -0.21 -5.00 7.31 -38.98 -0.28 -5.29 16 14 C 0.06 1.53 5.12 -106.42 -0.54 0.98 16 15 C -0.42 -10.69 7.22 -37.90 -0.27 -10.96 16 16 H 0.10 2.79 6.71 -52.48 -0.35 2.43 16 17 C 0.08 2.03 5.44 -17.32 -0.09 1.94 16 18 N -0.79 -19.59 13.92 55.55 0.77 -18.82 16 19 Si 0.91 19.66 24.53 -169.99 -4.17 15.49 16 20 H -0.27 -5.57 6.46 56.52 0.37 -5.20 16 21 H -0.29 -5.93 7.11 56.52 0.40 -5.53 16 22 H -0.25 -5.55 6.99 56.52 0.40 -5.16 16 23 C -0.09 -1.79 7.87 -39.16 -0.31 -2.10 16 24 C -0.12 -2.21 9.68 -39.64 -0.38 -2.60 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 29 H 0.05 0.50 8.14 -51.92 -0.42 0.08 16 30 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.86 6.26 -51.93 -0.33 0.53 16 32 H 0.07 0.81 8.08 -51.93 -0.42 0.39 16 33 H 0.06 0.78 8.08 -51.93 -0.42 0.36 16 34 H 0.11 1.57 8.03 -52.49 -0.42 1.15 16 35 H 0.12 2.22 8.06 -52.49 -0.42 1.80 16 36 H 0.13 2.32 8.06 -52.48 -0.42 1.89 16 37 H 0.10 1.85 8.06 -52.48 -0.42 1.43 16 38 H 0.11 2.55 4.52 -52.48 -0.24 2.31 16 39 H 0.29 6.50 8.29 -40.82 -0.34 6.16 16 40 H 0.13 2.87 6.75 -52.49 -0.35 2.51 16 41 H 0.11 1.76 8.06 -52.49 -0.42 1.34 16 LS Contribution 330.50 15.07 4.98 4.98 Total: -1.00 -26.55 330.50 -8.92 -35.48 By element: Atomic # 1 Polarization: 13.12 SS G_CDS: -5.94 Total: 7.18 kcal Atomic # 6 Polarization: -29.28 SS G_CDS: -4.48 Total: -33.76 kcal Atomic # 7 Polarization: -30.05 SS G_CDS: 0.68 Total: -29.37 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -4.17 Total: 15.49 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -26.55 -8.92 -35.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241323978.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.383 kcal (2) G-P(sol) polarization free energy of solvation -26.552 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.476 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.907 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds