Wall clock time and date at job start Tue Mar 31 2020 05:16:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47235 * 2 1 4 4 C 1.52997 * 109.46929 * 120.00396 * 2 1 3 5 5 C 1.50699 * 109.47670 * 64.99834 * 4 2 1 6 6 C 1.38325 * 119.88001 * 89.99868 * 5 4 2 7 7 C 1.38013 * 120.12574 * 179.97438 * 6 5 4 8 8 C 1.39353 * 119.87246 * 359.97438 * 7 6 5 9 9 C 1.48362 * 120.11831 * 180.02562 * 8 7 6 10 10 C 1.38895 * 119.61373 * 180.02562 * 9 8 7 11 11 C 1.40850 * 118.76475 * 180.02562 * 10 9 8 12 12 C 1.41531 * 120.98447 * 180.27128 * 11 10 9 13 13 H 1.08004 * 119.99589 * 155.87206 * 12 11 10 14 14 C 1.40045 * 120.00236 * 335.87401 * 12 11 10 15 15 N 1.30730 * 119.99805 * 343.27315 * 14 12 11 16 16 Si 1.86795 * 120.00013 * 163.27715 * 14 12 11 17 17 H 1.48498 * 109.47326 * 89.99677 * 16 14 12 18 18 H 1.48502 * 109.47412 * 210.00143 * 16 14 12 19 19 H 1.48507 * 109.47081 * 329.99911 * 16 14 12 20 20 C 1.41137 * 118.02612 * 359.97438 * 11 10 9 21 21 C 1.37743 * 119.06943 * 0.02562 * 20 11 10 22 22 N 1.31919 * 121.16017 * 359.97438 * 21 20 11 23 23 C 1.39346 * 119.76012 * 0.28394 * 8 7 6 24 24 C 1.38021 * 119.87470 * 359.44255 * 23 8 7 25 25 H 1.08998 * 109.47090 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.46767 * 300.00214 * 1 2 3 27 27 H 1.09004 * 109.46731 * 59.99873 * 1 2 3 28 28 H 1.09005 * 109.46723 * 239.99862 * 2 1 3 29 29 H 1.09009 * 109.46774 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47456 * 299.99894 * 3 2 1 31 31 H 1.08997 * 109.46759 * 60.00294 * 3 2 1 32 32 H 1.09001 * 109.47166 * 304.99465 * 4 2 1 33 33 H 1.08999 * 109.47115 * 185.00119 * 4 2 1 34 34 H 1.08005 * 119.93020 * 359.95681 * 6 5 4 35 35 H 1.07992 * 120.06102 * 180.02562 * 7 6 5 36 36 H 1.08005 * 120.61565 * 0.02562 * 10 9 8 37 37 H 0.97001 * 119.99663 * 179.97438 * 15 14 12 38 38 H 1.08005 * 120.46463 * 179.97438 * 20 11 10 39 39 H 1.08008 * 119.41684 * 180.02562 * 21 20 11 40 40 H 1.07991 * 120.06506 * 179.72350 * 23 8 7 41 41 H 1.07994 * 119.93925 * 180.25651 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 -2.1734 1.1889 6 6 2.4839 -3.0952 0.5940 7 6 2.1241 -4.4263 0.5365 8 6 0.9096 -4.8412 1.0795 9 6 0.5176 -6.2709 1.0211 10 6 -0.6955 -6.6727 1.5652 11 6 -1.0495 -8.0345 1.5004 12 6 -2.2767 -8.4945 2.0347 13 1 -2.7201 -9.4060 1.6618 14 6 -2.9161 -7.7678 3.0469 15 7 -2.2525 -6.8679 3.7242 16 14 -4.7168 -8.0847 3.4291 17 1 -4.8242 -9.1440 4.4642 18 1 -5.3433 -6.8357 3.9321 19 1 -5.4146 -8.5261 2.1948 20 6 -0.1470 -8.9256 0.8812 21 6 1.0338 -8.4342 0.3697 22 7 1.3307 -7.1514 0.4493 23 6 0.0623 -3.9074 1.6727 24 6 0.4348 -2.5797 1.7298 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 3.1302 1.4424 0.0005 30 1 1.6768 1.9563 -0.8899 31 1 1.6768 1.9562 0.8900 32 1 1.6054 -0.2618 2.1369 33 1 3.1263 -0.6444 1.2951 34 1 3.4249 -2.7724 0.1736 35 1 2.7828 -5.1452 0.0722 36 1 -1.3551 -5.9544 2.0294 37 1 -2.6955 -6.3643 4.4250 38 1 -0.3786 -9.9781 0.8103 39 1 1.7283 -9.1111 -0.1057 40 1 -0.8820 -4.2228 2.0911 41 1 -0.2193 -1.8558 2.1930 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241324089.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:15 Heat of formation + Delta-G solvation = 18.544211 kcal Electronic energy + Delta-G solvation = -20780.732351 eV Core-core repulsion = 17816.604109 eV Total energy + Delta-G solvation = -2964.128242 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.30721 -38.08364 -36.01380 -34.17740 -31.99583 -30.82020 -30.26017 -28.99291 -27.18012 -26.10560 -25.75313 -22.68310 -21.99668 -21.05896 -20.23380 -19.72429 -17.63554 -16.05009 -15.43925 -15.25217 -14.96214 -14.55385 -14.27285 -14.21840 -13.74394 -13.51960 -13.14399 -12.90135 -12.77124 -12.61301 -12.32683 -12.11825 -11.94202 -11.73802 -11.49083 -11.29833 -11.21976 -10.97752 -10.81951 -10.70184 -10.46042 -10.40319 -10.31407 -9.85715 -9.47723 -8.66023 -8.38735 -8.08511 -7.99814 -7.12321 -6.88434 -4.64705 1.54291 1.96497 2.74213 2.89249 2.98971 3.03122 3.21693 3.81133 4.26380 4.68667 4.83496 4.86470 4.96507 5.27602 5.31242 5.40190 5.51492 5.55856 5.62203 5.65700 5.67575 5.79533 5.87084 5.90449 6.02183 6.06634 6.08097 6.18317 6.30941 6.34760 6.49068 6.53272 6.68728 6.80293 6.81323 6.97698 7.04097 7.08153 7.24722 7.33340 7.45392 7.55732 7.81037 8.05672 8.38781 8.66960 8.68901 9.53689 10.01130 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018797 B = 0.004207 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.214044 B = 6653.842060 C = 7836.886521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.092 4.092 3 C -0.146 4.146 4 C -0.071 4.071 5 C -0.095 4.095 6 C -0.128 4.128 7 C -0.092 4.092 8 C -0.015 4.015 9 C 0.135 3.865 10 C -0.189 4.189 11 C 0.124 3.876 12 C -0.455 4.455 13 H 0.082 0.918 14 C 0.078 3.922 15 N -0.785 5.785 16 Si 0.911 3.089 17 H -0.268 1.268 18 H -0.274 1.274 19 H -0.259 1.259 20 C -0.274 4.274 21 C 0.103 3.897 22 N -0.565 5.565 23 C -0.105 4.105 24 C -0.121 4.121 25 H 0.064 0.936 26 H 0.052 0.948 27 H 0.049 0.951 28 H 0.070 0.930 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.053 0.947 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.113 0.887 35 H 0.129 0.871 36 H 0.132 0.868 37 H 0.284 0.716 38 H 0.101 0.899 39 H 0.122 0.878 40 H 0.129 0.871 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.453 11.848 -2.895 12.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.110 4.110 3 C -0.204 4.204 4 C -0.109 4.109 5 C -0.095 4.095 6 C -0.146 4.146 7 C -0.111 4.111 8 C -0.016 4.016 9 C 0.004 3.996 10 C -0.211 4.211 11 C 0.117 3.883 12 C -0.486 4.486 13 H 0.100 0.900 14 C -0.142 4.142 15 N -0.411 5.411 16 Si 0.735 3.265 17 H -0.193 1.193 18 H -0.199 1.199 19 H -0.183 1.183 20 C -0.297 4.297 21 C -0.052 4.052 22 N -0.280 5.280 23 C -0.124 4.124 24 C -0.139 4.139 25 H 0.083 0.917 26 H 0.071 0.929 27 H 0.068 0.932 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.072 0.928 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.131 0.869 35 H 0.147 0.853 36 H 0.150 0.850 37 H 0.095 0.905 38 H 0.120 0.880 39 H 0.140 0.860 40 H 0.146 0.854 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 4.235 12.319 -3.051 13.379 hybrid contribution -1.634 -0.628 0.711 1.890 sum 2.600 11.691 -2.340 12.203 Atomic orbital electron populations 1.21921 0.95176 1.02595 1.01120 1.21085 0.96202 0.95443 0.98269 1.21854 1.00763 0.96205 1.01562 1.20615 1.00610 0.91723 0.97933 1.19742 0.95148 0.94891 0.99747 1.20878 0.99413 0.93121 1.01201 1.21271 0.96285 0.95187 0.98358 1.18795 0.93990 0.91822 0.96946 1.19306 0.92182 0.91065 0.97002 1.22271 0.97387 0.96963 1.04477 1.17788 0.91690 0.90914 0.87943 1.19607 1.03959 1.08431 1.16565 0.89962 1.25979 1.00247 0.93475 0.94507 1.69761 1.37388 1.18303 1.15601 0.86259 0.81645 0.78917 0.79694 1.19297 1.19865 1.18292 1.21917 0.97218 0.99000 1.11560 1.21817 0.94865 0.91448 0.97115 1.67250 1.34873 1.02893 1.23013 1.21358 0.99963 0.92434 0.98607 1.20832 0.96341 0.95530 1.01166 0.91692 0.92932 0.93191 0.91156 0.92850 0.92862 0.92804 0.91421 0.91478 0.86862 0.85293 0.85040 0.90480 0.88049 0.86035 0.85358 0.86685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.63 8.76 37.16 0.33 -1.30 16 2 C -0.09 -0.96 2.91 -90.62 -0.26 -1.22 16 3 C -0.15 -1.25 9.19 37.16 0.34 -0.91 16 4 C -0.07 -0.82 4.83 -27.89 -0.13 -0.95 16 5 C -0.10 -1.40 4.72 -104.56 -0.49 -1.89 16 6 C -0.13 -2.02 9.68 -39.63 -0.38 -2.40 16 7 C -0.09 -1.75 9.57 -39.25 -0.38 -2.12 16 8 C -0.01 -0.31 5.88 -104.90 -0.62 -0.93 16 9 C 0.13 3.30 6.73 -83.04 -0.56 2.74 16 10 C -0.19 -4.87 8.14 -38.35 -0.31 -5.19 16 11 C 0.12 3.29 5.60 -106.55 -0.60 2.69 16 12 C -0.45 -11.70 9.12 -37.65 -0.34 -12.04 16 13 H 0.08 2.02 7.90 -52.48 -0.41 1.61 16 14 C 0.08 1.87 5.20 -17.34 -0.09 1.78 16 15 N -0.79 -19.45 10.93 55.55 0.61 -18.84 16 16 Si 0.91 17.88 29.59 -169.99 -5.03 12.85 16 17 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 18 H -0.27 -5.23 7.11 56.52 0.40 -4.83 16 19 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 20 C -0.27 -6.68 9.90 -38.66 -0.38 -7.06 16 21 C 0.10 2.40 11.15 -17.70 -0.20 2.20 16 22 N -0.57 -13.77 9.40 -9.94 -0.09 -13.86 16 23 C -0.10 -2.02 9.41 -39.25 -0.37 -2.39 16 24 C -0.12 -1.93 7.94 -39.63 -0.31 -2.24 16 25 H 0.06 0.81 6.27 -51.93 -0.33 0.49 16 26 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.42 8.14 -51.92 -0.42 0.00 16 30 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 31 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 32 H 0.07 0.73 8.08 -51.93 -0.42 0.31 16 33 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 34 H 0.11 1.50 8.06 -52.48 -0.42 1.07 16 35 H 0.13 2.46 7.53 -52.49 -0.40 2.07 16 36 H 0.13 3.39 4.33 -52.48 -0.23 3.16 16 37 H 0.28 6.36 8.29 -40.82 -0.34 6.02 16 38 H 0.10 2.26 8.06 -52.48 -0.42 1.84 16 39 H 0.12 2.39 8.06 -52.48 -0.42 1.96 16 40 H 0.13 2.56 6.18 -52.49 -0.32 2.24 16 41 H 0.12 1.59 8.04 -52.49 -0.42 1.16 16 LS Contribution 337.70 15.07 5.09 5.09 Total: -1.00 -27.46 337.70 -10.08 -37.54 By element: Atomic # 1 Polarization: 14.36 SS G_CDS: -5.89 Total: 8.48 kcal Atomic # 6 Polarization: -26.48 SS G_CDS: -4.77 Total: -31.25 kcal Atomic # 7 Polarization: -33.22 SS G_CDS: 0.51 Total: -32.71 kcal Atomic # 14 Polarization: 17.88 SS G_CDS: -5.03 Total: 12.85 kcal Total LS contribution 5.09 Total: 5.09 kcal Total: -27.46 -10.08 -37.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241324089.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.082 kcal (2) G-P(sol) polarization free energy of solvation -27.458 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.080 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.538 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds