Wall clock time and date at job start Tue Mar 31 2020 05:16:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52998 * 109.47235 * 2 1 4 4 C 1.52997 * 109.46929 * 120.00396 * 2 1 3 5 5 C 1.50699 * 109.47670 * 64.99834 * 4 2 1 6 6 C 1.38325 * 119.88001 * 89.99868 * 5 4 2 7 7 C 1.38013 * 120.12574 * 179.97438 * 6 5 4 8 8 C 1.39353 * 119.87246 * 359.97438 * 7 6 5 9 9 C 1.48362 * 120.11831 * 180.02562 * 8 7 6 10 10 C 1.38895 * 119.61373 * 180.02562 * 9 8 7 11 11 C 1.40850 * 118.76475 * 180.02562 * 10 9 8 12 12 C 1.41531 * 120.98447 * 180.27128 * 11 10 9 13 13 H 1.08004 * 119.99589 * 155.87206 * 12 11 10 14 14 C 1.40045 * 120.00236 * 335.87401 * 12 11 10 15 15 N 1.30730 * 119.99805 * 343.27315 * 14 12 11 16 16 Si 1.86795 * 120.00013 * 163.27715 * 14 12 11 17 17 H 1.48498 * 109.47326 * 89.99677 * 16 14 12 18 18 H 1.48502 * 109.47412 * 210.00143 * 16 14 12 19 19 H 1.48507 * 109.47081 * 329.99911 * 16 14 12 20 20 C 1.41137 * 118.02612 * 359.97438 * 11 10 9 21 21 C 1.37743 * 119.06943 * 0.02562 * 20 11 10 22 22 N 1.31919 * 121.16017 * 359.97438 * 21 20 11 23 23 C 1.39346 * 119.76012 * 0.28394 * 8 7 6 24 24 C 1.38021 * 119.87470 * 359.44255 * 23 8 7 25 25 H 1.08998 * 109.47090 * 179.97438 * 1 2 3 26 26 H 1.08991 * 109.46767 * 300.00214 * 1 2 3 27 27 H 1.09004 * 109.46731 * 59.99873 * 1 2 3 28 28 H 1.09005 * 109.46723 * 239.99862 * 2 1 3 29 29 H 1.09009 * 109.46774 * 179.97438 * 3 2 1 30 30 H 1.08994 * 109.47456 * 299.99894 * 3 2 1 31 31 H 1.08997 * 109.46759 * 60.00294 * 3 2 1 32 32 H 1.09001 * 109.47166 * 304.99465 * 4 2 1 33 33 H 1.08999 * 109.47115 * 185.00119 * 4 2 1 34 34 H 1.08005 * 119.93020 * 359.95681 * 6 5 4 35 35 H 1.07992 * 120.06102 * 180.02562 * 7 6 5 36 36 H 1.08005 * 120.61565 * 0.02562 * 10 9 8 37 37 H 0.97001 * 119.99663 * 179.97438 * 15 14 12 38 38 H 1.08005 * 120.46463 * 179.97438 * 20 11 10 39 39 H 1.08008 * 119.41684 * 180.02562 * 21 20 11 40 40 H 1.07991 * 120.06506 * 179.72350 * 23 8 7 41 41 H 1.07994 * 119.93925 * 180.25651 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 -2.1734 1.1889 6 6 2.4839 -3.0952 0.5940 7 6 2.1241 -4.4263 0.5365 8 6 0.9096 -4.8412 1.0795 9 6 0.5176 -6.2709 1.0211 10 6 -0.6955 -6.6727 1.5652 11 6 -1.0495 -8.0345 1.5004 12 6 -2.2767 -8.4945 2.0347 13 1 -2.7201 -9.4060 1.6618 14 6 -2.9161 -7.7678 3.0469 15 7 -2.2525 -6.8679 3.7242 16 14 -4.7168 -8.0847 3.4291 17 1 -4.8242 -9.1440 4.4642 18 1 -5.3433 -6.8357 3.9321 19 1 -5.4146 -8.5261 2.1948 20 6 -0.1470 -8.9256 0.8812 21 6 1.0338 -8.4342 0.3697 22 7 1.3307 -7.1514 0.4493 23 6 0.0623 -3.9074 1.6727 24 6 0.4348 -2.5797 1.7298 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3632 0.5138 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 3.1302 1.4424 0.0005 30 1 1.6768 1.9563 -0.8899 31 1 1.6768 1.9562 0.8900 32 1 1.6054 -0.2618 2.1369 33 1 3.1263 -0.6444 1.2951 34 1 3.4249 -2.7724 0.1736 35 1 2.7828 -5.1452 0.0722 36 1 -1.3551 -5.9544 2.0294 37 1 -2.6955 -6.3643 4.4250 38 1 -0.3786 -9.9781 0.8103 39 1 1.7283 -9.1111 -0.1057 40 1 -0.8820 -4.2228 2.0911 41 1 -0.2193 -1.8558 2.1930 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241324089.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:14 Heat of formation + Delta-G solvation = 7.152735 kcal Electronic energy + Delta-G solvation = -20781.226322 eV Core-core repulsion = 17816.604109 eV Total energy + Delta-G solvation = -2964.622213 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -40.80498 -39.70036 -37.06039 -36.02585 -33.45518 -32.58560 -31.74314 -30.50132 -28.01721 -27.87051 -27.05447 -24.29355 -23.52508 -22.68393 -21.67858 -20.74926 -19.43107 -17.69452 -17.00827 -16.61195 -16.49275 -16.06908 -15.67660 -15.22058 -15.12051 -15.08890 -14.54734 -14.40290 -14.30069 -14.16571 -13.44588 -13.35216 -13.11773 -12.98921 -12.96029 -12.70107 -12.66252 -12.37810 -12.00622 -11.90685 -11.79749 -11.63663 -11.47305 -11.43185 -11.27305 -10.24831 -9.99060 -9.89799 -9.76905 -8.83215 -8.67891 -6.60147 -0.00584 0.57486 0.96149 1.17090 1.36575 1.49649 1.56488 2.15699 2.65535 3.00900 3.63216 3.75290 3.87804 3.96131 4.12265 4.14950 4.21742 4.31936 4.42724 4.57317 4.63312 4.77532 4.82812 4.84222 4.87778 4.96788 4.99081 4.99789 5.10746 5.12013 5.13903 5.18717 5.26483 5.34113 5.38860 5.48217 5.50148 5.53610 5.60009 5.76554 5.82772 5.92447 6.14594 6.19746 6.48513 6.75903 6.76523 7.65352 8.21126 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018797 B = 0.004207 C = 0.003572 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1489.214044 B = 6653.842060 C = 7836.886521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.089 4.089 3 C -0.142 4.142 4 C -0.070 4.070 5 C -0.077 4.077 6 C -0.123 4.123 7 C -0.099 4.099 8 C -0.056 4.056 9 C 0.131 3.869 10 C -0.219 4.219 11 C 0.094 3.906 12 C -0.487 4.487 13 H 0.084 0.916 14 C 0.038 3.962 15 N -0.813 5.813 16 Si 0.987 3.013 17 H -0.259 1.259 18 H -0.263 1.263 19 H -0.258 1.258 20 C -0.293 4.293 21 C 0.101 3.899 22 N -0.577 5.577 23 C -0.117 4.117 24 C -0.116 4.116 25 H 0.042 0.958 26 H 0.061 0.939 27 H 0.056 0.944 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.058 0.942 31 H 0.060 0.940 32 H 0.080 0.920 33 H 0.085 0.915 34 H 0.147 0.853 35 H 0.122 0.878 36 H 0.123 0.877 37 H 0.293 0.707 38 H 0.115 0.885 39 H 0.159 0.841 40 H 0.109 0.891 41 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.889 14.157 -2.804 14.947 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.108 4.108 3 C -0.200 4.200 4 C -0.107 4.107 5 C -0.077 4.077 6 C -0.140 4.140 7 C -0.118 4.118 8 C -0.057 4.057 9 C 0.001 3.999 10 C -0.241 4.241 11 C 0.087 3.913 12 C -0.517 4.517 13 H 0.102 0.898 14 C -0.179 4.179 15 N -0.438 5.438 16 Si 0.807 3.193 17 H -0.184 1.184 18 H -0.187 1.187 19 H -0.181 1.181 20 C -0.316 4.316 21 C -0.054 4.054 22 N -0.292 5.292 23 C -0.135 4.135 24 C -0.134 4.134 25 H 0.061 0.939 26 H 0.080 0.920 27 H 0.075 0.925 28 H 0.081 0.919 29 H 0.080 0.920 30 H 0.077 0.923 31 H 0.079 0.921 32 H 0.099 0.901 33 H 0.104 0.896 34 H 0.165 0.835 35 H 0.140 0.860 36 H 0.141 0.859 37 H 0.104 0.896 38 H 0.133 0.867 39 H 0.176 0.824 40 H 0.127 0.873 41 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 4.689 14.625 -2.965 15.642 hybrid contribution -1.672 -1.227 0.663 2.177 sum 3.018 13.398 -2.302 13.925 Atomic orbital electron populations 1.21938 0.95678 1.01351 1.02042 1.21062 0.95745 0.96652 0.97309 1.21810 1.01325 0.94609 1.02209 1.20715 1.01944 0.88973 0.99032 1.20180 0.93775 0.96812 0.96949 1.21215 1.00695 0.91723 1.00410 1.21294 0.95323 0.96706 0.98456 1.18844 0.96025 0.90584 1.00199 1.19823 0.91624 0.92906 0.95592 1.22269 0.98464 0.96860 1.06495 1.18237 0.92688 0.91703 0.88699 1.19906 1.04676 1.09386 1.17773 0.89751 1.26880 1.04628 0.92776 0.93641 1.69816 1.39362 1.18737 1.15875 0.85128 0.75456 0.79234 0.79497 1.18394 1.18707 1.18136 1.22148 0.97673 0.99588 1.12214 1.22396 0.95048 0.91736 0.96254 1.67384 1.34926 1.03365 1.23486 1.21314 0.99260 0.93818 0.99155 1.21083 0.97260 0.94333 1.00714 0.93934 0.91965 0.92473 0.91874 0.91952 0.92336 0.92123 0.90127 0.89628 0.83548 0.86029 0.85939 0.89584 0.86655 0.82420 0.87263 0.84291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.93 8.76 71.98 0.63 -2.30 16 2 C -0.09 -1.57 2.91 -10.79 -0.03 -1.60 16 3 C -0.14 -1.89 9.19 71.98 0.66 -1.23 16 4 C -0.07 -1.32 4.83 29.85 0.14 -1.17 16 5 C -0.08 -2.08 4.72 -19.82 -0.09 -2.17 16 6 C -0.12 -3.62 9.68 22.24 0.22 -3.40 16 7 C -0.10 -3.75 9.57 22.48 0.22 -3.54 16 8 C -0.06 -2.46 5.88 -20.05 -0.12 -2.58 16 9 C 0.13 6.74 6.73 41.85 0.28 7.02 16 10 C -0.22 -11.98 8.14 23.07 0.19 -11.79 16 11 C 0.09 5.24 5.60 -21.12 -0.12 5.12 16 12 C -0.49 -26.07 9.12 23.52 0.21 -25.85 16 13 H 0.08 4.30 7.90 -2.91 -0.02 4.27 16 14 C 0.04 1.88 5.20 85.30 0.44 2.32 16 15 N -0.81 -41.61 10.93 21.84 0.24 -41.37 16 16 Si 0.99 36.94 29.59 68.60 2.03 38.97 16 17 H -0.26 -9.31 7.11 99.48 0.71 -8.60 16 18 H -0.26 -9.28 7.11 99.48 0.71 -8.58 16 19 H -0.26 -9.50 7.11 99.48 0.71 -8.79 16 20 C -0.29 -14.81 9.90 22.86 0.23 -14.59 16 21 C 0.10 4.76 11.15 84.56 0.94 5.71 16 22 N -0.58 -28.91 9.40 -185.37 -1.74 -30.65 16 23 C -0.12 -4.65 9.41 22.49 0.21 -4.43 16 24 C -0.12 -3.60 7.94 22.24 0.18 -3.42 16 25 H 0.04 1.00 6.27 -2.39 -0.01 0.98 16 26 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 27 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 28 H 0.06 1.22 8.14 -2.38 -0.02 1.20 16 29 H 0.06 0.73 8.14 -2.38 -0.02 0.71 16 30 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 31 H 0.06 0.74 8.14 -2.39 -0.02 0.72 16 32 H 0.08 1.39 8.08 -2.39 -0.02 1.37 16 33 H 0.09 1.39 8.08 -2.39 -0.02 1.37 16 34 H 0.15 3.33 8.06 -2.91 -0.02 3.31 16 35 H 0.12 4.70 7.53 -2.91 -0.02 4.67 16 36 H 0.12 6.77 4.33 -2.91 -0.01 6.76 16 37 H 0.29 13.42 8.29 -92.71 -0.77 12.65 16 38 H 0.12 5.30 8.06 -2.91 -0.02 5.27 16 39 H 0.16 6.09 8.06 -2.91 -0.02 6.07 16 40 H 0.11 4.68 6.18 -2.91 -0.02 4.66 16 41 H 0.14 3.58 8.04 -2.91 -0.02 3.55 16 Total: -1.00 -62.34 337.70 5.73 -56.61 By element: Atomic # 1 Polarization: 33.34 SS G_CDS: 1.01 Total: 34.35 kcal Atomic # 6 Polarization: -62.09 SS G_CDS: 4.19 Total: -57.90 kcal Atomic # 7 Polarization: -70.52 SS G_CDS: -1.50 Total: -72.03 kcal Atomic # 14 Polarization: 36.94 SS G_CDS: 2.03 Total: 38.97 kcal Total: -62.34 5.73 -56.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241324089.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.767 kcal (2) G-P(sol) polarization free energy of solvation -62.344 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.730 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.614 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds