Wall clock time and date at job start Tue Mar 31 2020 05:16:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47165 * 2 1 4 4 C 1.53000 * 109.46776 * 119.99502 * 2 1 3 5 5 C 1.50703 * 109.46912 * 175.00090 * 4 2 1 6 6 C 1.38335 * 119.86896 * 269.72892 * 5 4 2 7 7 C 1.38009 * 120.11921 * 179.72549 * 6 5 4 8 8 C 1.39387 * 119.87350 * 0.54287 * 7 6 5 9 9 C 1.48317 * 120.12253 * 179.70179 * 8 7 6 10 10 C 1.39899 * 119.60650 * 0.03013 * 9 8 7 11 11 C 1.38700 * 119.45897 * 179.97438 * 10 9 8 12 12 C 1.38292 * 118.68695 * 0.02562 * 11 10 9 13 13 C 1.40681 * 119.19033 * 359.97438 * 12 11 10 14 14 C 1.41381 * 119.76599 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99768 * 0.02562 * 14 13 12 16 16 C 1.40011 * 120.00042 * 179.97438 * 14 13 12 17 17 N 1.30748 * 120.00127 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00216 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46655 * 60.00468 * 18 16 14 20 20 H 1.48498 * 109.47508 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47337 * 300.00975 * 18 16 14 22 22 N 1.32220 * 119.60222 * 179.75573 * 9 8 7 23 23 C 1.39386 * 119.75105 * 359.73642 * 8 7 6 24 24 C 1.37997 * 119.87226 * 359.97438 * 23 8 7 25 25 H 1.09000 * 109.47312 * 300.00535 * 1 2 3 26 26 H 1.09004 * 109.46964 * 60.00333 * 1 2 3 27 27 H 1.08994 * 109.47359 * 180.02562 * 1 2 3 28 28 H 1.08990 * 109.47355 * 239.99492 * 2 1 3 29 29 H 1.09000 * 109.47443 * 59.99545 * 3 2 1 30 30 H 1.09001 * 109.47099 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.46908 * 299.99702 * 3 2 1 32 32 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 33 33 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 34 34 H 1.08000 * 119.94215 * 359.97438 * 6 5 4 35 35 H 1.08003 * 120.05931 * 180.27427 * 7 6 5 36 36 H 1.07993 * 120.27127 * 359.96926 * 10 9 8 37 37 H 1.07992 * 120.65118 * 180.02562 * 11 10 9 38 38 H 1.08005 * 120.40079 * 179.97438 * 12 11 10 39 39 H 0.96998 * 120.00015 * 179.97438 * 17 16 14 40 40 H 1.07998 * 120.06322 * 180.02562 * 23 8 7 41 41 H 1.08001 * 119.93757 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.8293 1.1890 6 6 4.1299 -1.9338 0.5992 7 6 5.5048 -2.0355 0.5361 8 6 6.3011 -1.0280 1.0782 9 6 7.7792 -1.1348 1.0193 10 6 8.3681 -2.2515 0.4164 11 6 9.7507 -2.3479 0.3625 12 6 10.5090 -1.3299 0.9111 13 6 9.8582 -0.2324 1.5037 14 6 10.6216 0.8150 2.0687 15 1 11.7004 0.7709 2.0440 16 6 9.9790 1.9098 2.6592 17 7 8.6729 1.9634 2.6887 18 14 10.9875 3.2933 3.4063 19 1 11.8444 3.9030 2.3579 20 1 10.0764 4.3251 3.9635 21 1 11.8437 2.7513 4.4919 22 7 8.5247 -0.1708 1.5324 23 6 5.7030 0.0798 1.6764 24 6 4.3272 0.1737 1.7284 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8898 29 1 1.6767 1.9564 0.8899 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.7515 -0.1582 2.1370 33 1 1.6053 -1.7197 1.2953 34 1 3.5120 -2.7161 0.1838 35 1 5.9629 -2.8961 0.0714 36 1 7.7511 -3.0320 -0.0036 37 1 10.2255 -3.2012 -0.0986 38 1 11.5877 -1.3768 0.8848 39 1 8.2278 2.7217 3.0981 40 1 6.3151 0.8635 2.0976 41 1 3.8626 1.0314 2.1921 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241324304.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:17 Heat of formation + Delta-G solvation = 30.385952 kcal Electronic energy + Delta-G solvation = -20901.202005 eV Core-core repulsion = 17937.587260 eV Total energy + Delta-G solvation = -2963.614745 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -39.21636 -37.95980 -35.97224 -33.68662 -31.87851 -30.76495 -30.10241 -29.32394 -27.13794 -26.39387 -25.27525 -22.35600 -22.19088 -20.88526 -20.17513 -19.66133 -17.49568 -16.23488 -15.39757 -15.03311 -14.76465 -14.62073 -14.30232 -14.21855 -13.54831 -13.38702 -13.16693 -12.75892 -12.63577 -12.44188 -12.24691 -11.95706 -11.87948 -11.67674 -11.25180 -11.17732 -11.07234 -10.80760 -10.77815 -10.65832 -10.55888 -10.31484 -10.27611 -9.89743 -9.43933 -8.67619 -8.30869 -8.03778 -7.63019 -7.14613 -6.44469 -4.54977 1.59488 2.04792 2.81767 3.06905 3.07128 3.09054 3.20870 3.92644 4.35851 4.81476 4.88011 4.90051 5.00430 5.31994 5.41619 5.43424 5.54894 5.61230 5.68107 5.72710 5.83434 5.90159 5.92267 5.94505 6.04738 6.07896 6.10762 6.28272 6.35642 6.41344 6.47011 6.54769 6.63411 6.74121 6.84008 6.93308 7.07501 7.20200 7.33218 7.37521 7.58150 7.66761 7.72499 8.01224 8.19706 8.63829 8.88891 10.03320 10.28011 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018342 B = 0.004435 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.191217 B = 6311.218138 C = 7616.396009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.091 4.091 3 C -0.151 4.151 4 C -0.072 4.072 5 C -0.093 4.093 6 C -0.131 4.131 7 C -0.110 4.110 8 C -0.022 4.022 9 C 0.175 3.825 10 C -0.301 4.301 11 C -0.060 4.060 12 C -0.273 4.273 13 C 0.257 3.743 14 C -0.432 4.432 15 H 0.083 0.917 16 C 0.072 3.928 17 N -0.719 5.719 18 Si 0.908 3.092 19 H -0.265 1.265 20 H -0.277 1.277 21 H -0.265 1.265 22 N -0.468 5.468 23 C -0.078 4.078 24 C -0.128 4.128 25 H 0.053 0.947 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.065 0.935 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.112 0.888 35 H 0.120 0.880 36 H 0.097 0.903 37 H 0.097 0.903 38 H 0.099 0.901 39 H 0.273 0.727 40 H 0.153 0.847 41 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.963 -1.852 -2.404 12.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.208 4.208 4 C -0.109 4.109 5 C -0.093 4.093 6 C -0.149 4.149 7 C -0.129 4.129 8 C -0.023 4.023 9 C 0.031 3.969 10 C -0.324 4.324 11 C -0.084 4.084 12 C -0.296 4.296 13 C 0.131 3.869 14 C -0.463 4.463 15 H 0.101 0.899 16 C -0.153 4.153 17 N -0.340 5.340 18 Si 0.732 3.268 19 H -0.190 1.190 20 H -0.202 1.202 21 H -0.190 1.190 22 N -0.181 5.181 23 C -0.097 4.097 24 C -0.146 4.146 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.084 0.916 31 H 0.068 0.932 32 H 0.086 0.914 33 H 0.084 0.916 34 H 0.130 0.870 35 H 0.138 0.862 36 H 0.115 0.885 37 H 0.115 0.885 38 H 0.117 0.883 39 H 0.084 0.916 40 H 0.170 0.830 41 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -12.486 -0.958 -1.929 12.671 hybrid contribution 0.960 -0.244 -0.129 0.999 sum -11.527 -1.203 -2.058 11.771 Atomic orbital electron populations 1.21855 0.95541 1.01419 1.01560 1.21078 0.94907 0.96731 0.98234 1.21924 1.02317 0.95504 1.01089 1.20619 0.91795 1.00535 0.97942 1.19764 0.94832 0.95091 0.99607 1.20744 0.94377 0.97993 1.01797 1.21221 0.93181 0.98700 0.99792 1.18857 0.91814 0.94254 0.97397 1.19782 0.91818 0.91126 0.94191 1.21220 0.94726 1.01936 1.14536 1.20792 0.93710 0.96888 0.97050 1.21793 0.98646 0.98600 1.10545 1.18516 0.88201 0.90978 0.89196 1.19558 0.94139 1.01540 1.31108 0.89872 1.26021 0.95033 0.99173 0.95116 1.70061 1.08787 1.26828 1.28343 0.86386 0.80315 0.80158 0.79944 1.18982 1.20200 1.18988 1.68720 1.05643 1.24603 1.19089 1.21746 0.93959 0.98120 0.95844 1.20973 0.93792 0.98469 1.01387 0.92806 0.92880 0.92896 0.91206 0.92936 0.91588 0.93226 0.91438 0.91571 0.86966 0.86201 0.88461 0.88503 0.88284 0.91614 0.82975 0.86828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.29 9.19 37.16 0.34 -0.95 16 2 C -0.09 -0.98 2.91 -90.62 -0.26 -1.25 16 3 C -0.15 -1.72 8.76 37.16 0.33 -1.40 16 4 C -0.07 -0.84 4.84 -27.88 -0.13 -0.98 16 5 C -0.09 -1.39 4.72 -104.55 -0.49 -1.89 16 6 C -0.13 -2.04 9.68 -39.63 -0.38 -2.42 16 7 C -0.11 -1.99 9.42 -39.24 -0.37 -2.36 16 8 C -0.02 -0.48 5.88 -104.90 -0.62 -1.10 16 9 C 0.17 4.33 6.74 -82.93 -0.56 3.77 16 10 C -0.30 -6.90 9.48 -38.79 -0.37 -7.26 16 11 C -0.06 -1.37 10.15 -39.39 -0.40 -1.77 16 12 C -0.27 -6.75 9.83 -38.64 -0.38 -7.13 16 13 C 0.26 7.03 6.55 -85.01 -0.56 6.47 16 14 C -0.43 -11.46 9.14 -37.72 -0.34 -11.81 16 15 H 0.08 2.06 7.85 -52.49 -0.41 1.65 16 16 C 0.07 1.79 5.50 -17.35 -0.10 1.69 16 17 N -0.72 -18.50 11.11 55.55 0.62 -17.88 16 18 Si 0.91 18.38 29.56 -169.99 -5.02 13.36 16 19 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 20 H -0.28 -5.47 7.11 56.52 0.40 -5.06 16 21 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 22 N -0.47 -12.78 6.92 -7.68 -0.05 -12.83 16 23 C -0.08 -1.62 9.57 -39.24 -0.38 -1.99 16 24 C -0.13 -2.17 7.94 -39.63 -0.31 -2.48 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.89 6.26 -51.93 -0.33 0.56 16 31 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 32 H 0.07 0.76 8.08 -51.93 -0.42 0.34 16 33 H 0.07 0.71 8.08 -51.93 -0.42 0.29 16 34 H 0.11 1.45 8.06 -52.49 -0.42 1.02 16 35 H 0.12 2.01 6.17 -52.48 -0.32 1.69 16 36 H 0.10 1.95 6.17 -52.49 -0.32 1.62 16 37 H 0.10 1.86 8.06 -52.49 -0.42 1.44 16 38 H 0.10 2.25 8.06 -52.48 -0.42 1.82 16 39 H 0.27 6.37 8.29 -40.82 -0.34 6.04 16 40 H 0.15 3.52 7.18 -52.49 -0.38 3.14 16 41 H 0.11 1.70 8.03 -52.49 -0.42 1.28 16 LS Contribution 338.33 15.07 5.10 5.10 Total: -1.00 -28.17 338.33 -10.31 -38.48 By element: Atomic # 1 Polarization: 12.60 SS G_CDS: -5.96 Total: 6.64 kcal Atomic # 6 Polarization: -27.87 SS G_CDS: -4.99 Total: -32.86 kcal Atomic # 7 Polarization: -31.28 SS G_CDS: 0.56 Total: -30.71 kcal Atomic # 14 Polarization: 18.38 SS G_CDS: -5.02 Total: 13.36 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -28.17 -10.31 -38.48 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241324304.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.869 kcal (2) G-P(sol) polarization free energy of solvation -28.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.698 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.312 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.386 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds