Wall clock time and date at job start Tue Mar 31 2020 05:16:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.47165 * 2 1 4 4 C 1.53000 * 109.46776 * 119.99502 * 2 1 3 5 5 C 1.50703 * 109.46912 * 175.00090 * 4 2 1 6 6 C 1.38335 * 119.86896 * 269.72892 * 5 4 2 7 7 C 1.38009 * 120.11921 * 179.72549 * 6 5 4 8 8 C 1.39387 * 119.87350 * 0.54287 * 7 6 5 9 9 C 1.48317 * 120.12253 * 179.70179 * 8 7 6 10 10 C 1.39899 * 119.60650 * 0.03013 * 9 8 7 11 11 C 1.38700 * 119.45897 * 179.97438 * 10 9 8 12 12 C 1.38292 * 118.68695 * 0.02562 * 11 10 9 13 13 C 1.40681 * 119.19033 * 359.97438 * 12 11 10 14 14 C 1.41381 * 119.76599 * 179.97438 * 13 12 11 15 15 H 1.08001 * 119.99768 * 0.02562 * 14 13 12 16 16 C 1.40011 * 120.00042 * 179.97438 * 14 13 12 17 17 N 1.30748 * 120.00127 * 0.02562 * 16 14 13 18 18 Si 1.86801 * 120.00216 * 179.97438 * 16 14 13 19 19 H 1.48504 * 109.46655 * 60.00468 * 18 16 14 20 20 H 1.48498 * 109.47508 * 180.02562 * 18 16 14 21 21 H 1.48495 * 109.47337 * 300.00975 * 18 16 14 22 22 N 1.32220 * 119.60222 * 179.75573 * 9 8 7 23 23 C 1.39386 * 119.75105 * 359.73642 * 8 7 6 24 24 C 1.37997 * 119.87226 * 359.97438 * 23 8 7 25 25 H 1.09000 * 109.47312 * 300.00535 * 1 2 3 26 26 H 1.09004 * 109.46964 * 60.00333 * 1 2 3 27 27 H 1.08994 * 109.47359 * 180.02562 * 1 2 3 28 28 H 1.08990 * 109.47355 * 239.99492 * 2 1 3 29 29 H 1.09000 * 109.47443 * 59.99545 * 3 2 1 30 30 H 1.09001 * 109.47099 * 179.97438 * 3 2 1 31 31 H 1.09004 * 109.46908 * 299.99702 * 3 2 1 32 32 H 1.09002 * 109.47398 * 295.00168 * 4 2 1 33 33 H 1.09001 * 109.47194 * 55.00349 * 4 2 1 34 34 H 1.08000 * 119.94215 * 359.97438 * 6 5 4 35 35 H 1.08003 * 120.05931 * 180.27427 * 7 6 5 36 36 H 1.07993 * 120.27127 * 359.96926 * 10 9 8 37 37 H 1.07992 * 120.65118 * 180.02562 * 11 10 9 38 38 H 1.08005 * 120.40079 * 179.97438 * 12 11 10 39 39 H 0.96998 * 120.00015 * 179.97438 * 17 16 14 40 40 H 1.07998 * 120.06322 * 180.02562 * 23 8 7 41 41 H 1.08001 * 119.93757 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.8293 1.1890 6 6 4.1299 -1.9338 0.5992 7 6 5.5048 -2.0355 0.5361 8 6 6.3011 -1.0280 1.0782 9 6 7.7792 -1.1348 1.0193 10 6 8.3681 -2.2515 0.4164 11 6 9.7507 -2.3479 0.3625 12 6 10.5090 -1.3299 0.9111 13 6 9.8582 -0.2324 1.5037 14 6 10.6216 0.8150 2.0687 15 1 11.7004 0.7709 2.0440 16 6 9.9790 1.9098 2.6592 17 7 8.6729 1.9634 2.6887 18 14 10.9875 3.2933 3.4063 19 1 11.8444 3.9030 2.3579 20 1 10.0764 4.3251 3.9635 21 1 11.8437 2.7513 4.4919 22 7 8.5247 -0.1708 1.5324 23 6 5.7030 0.0798 1.6764 24 6 4.3272 0.1737 1.7284 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8901 27 1 -0.3634 -1.0276 0.0005 28 1 1.8934 -0.5139 -0.8898 29 1 1.6767 1.9564 0.8899 30 1 3.1301 1.4425 0.0005 31 1 1.6767 1.9563 -0.8901 32 1 1.7515 -0.1582 2.1370 33 1 1.6053 -1.7197 1.2953 34 1 3.5120 -2.7161 0.1838 35 1 5.9629 -2.8961 0.0714 36 1 7.7511 -3.0320 -0.0036 37 1 10.2255 -3.2012 -0.0986 38 1 11.5877 -1.3768 0.8848 39 1 8.2278 2.7217 3.0981 40 1 6.3151 0.8635 2.0976 41 1 3.8626 1.0314 2.1921 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241324304.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:16 Heat of formation + Delta-G solvation = 18.383089 kcal Electronic energy + Delta-G solvation = -20901.722489 eV Core-core repulsion = 17937.587260 eV Total energy + Delta-G solvation = -2964.135228 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.69723 -39.60419 -37.05083 -35.52227 -33.38437 -32.48674 -31.63335 -30.88691 -27.97523 -27.92236 -26.82439 -23.95092 -23.70809 -22.55259 -21.57758 -20.73284 -19.34816 -17.83840 -16.84684 -16.47454 -16.37690 -16.12437 -15.70084 -15.16849 -15.03902 -14.93781 -14.41441 -14.39132 -14.10847 -14.00935 -13.32899 -13.25625 -12.96091 -12.84663 -12.78590 -12.72367 -12.64661 -12.31938 -12.21907 -11.86912 -11.71977 -11.63590 -11.43975 -11.42307 -11.23236 -10.35752 -9.87810 -9.70231 -9.50851 -8.81366 -8.29762 -6.52493 0.05955 0.64481 1.05051 1.31230 1.38991 1.51037 1.55925 2.21711 2.75939 3.10699 3.76991 3.91383 3.97993 3.99436 4.11810 4.17042 4.29284 4.36347 4.44316 4.56632 4.69110 4.75812 4.82055 4.85191 4.86842 4.87488 4.99786 5.04615 5.10751 5.12236 5.16652 5.21652 5.30975 5.36400 5.44580 5.48744 5.54309 5.63427 5.68000 5.81879 5.84107 5.93724 6.16631 6.26713 6.28066 6.73666 6.94830 8.15025 8.44158 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.018342 B = 0.004435 C = 0.003675 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1526.191217 B = 6311.218138 C = 7616.396009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.088 4.088 3 C -0.153 4.153 4 C -0.069 4.069 5 C -0.077 4.077 6 C -0.124 4.124 7 C -0.108 4.108 8 C -0.061 4.061 9 C 0.153 3.847 10 C -0.304 4.304 11 C -0.058 4.058 12 C -0.298 4.298 13 C 0.220 3.780 14 C -0.470 4.470 15 H 0.088 0.912 16 C 0.026 3.974 17 N -0.751 5.751 18 Si 0.986 3.014 19 H -0.260 1.260 20 H -0.268 1.268 21 H -0.260 1.260 22 N -0.501 5.501 23 C -0.102 4.102 24 C -0.126 4.126 25 H 0.058 0.942 26 H 0.057 0.943 27 H 0.064 0.936 28 H 0.065 0.935 29 H 0.059 0.941 30 H 0.039 0.961 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.088 0.912 34 H 0.152 0.848 35 H 0.134 0.866 36 H 0.129 0.871 37 H 0.137 0.863 38 H 0.110 0.890 39 H 0.278 0.722 40 H 0.117 0.883 41 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.330 -2.848 -2.885 14.892 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.106 4.106 3 C -0.210 4.210 4 C -0.107 4.107 5 C -0.077 4.077 6 C -0.141 4.141 7 C -0.127 4.127 8 C -0.062 4.062 9 C 0.010 3.990 10 C -0.326 4.326 11 C -0.082 4.082 12 C -0.321 4.321 13 C 0.095 3.905 14 C -0.501 4.501 15 H 0.106 0.894 16 C -0.196 4.196 17 N -0.373 5.373 18 Si 0.807 3.193 19 H -0.184 1.184 20 H -0.192 1.192 21 H -0.184 1.184 22 N -0.214 5.214 23 C -0.121 4.121 24 C -0.144 4.144 25 H 0.077 0.923 26 H 0.077 0.923 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.078 0.922 30 H 0.058 0.942 31 H 0.076 0.924 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.169 0.831 35 H 0.152 0.848 36 H 0.147 0.853 37 H 0.154 0.846 38 H 0.128 0.872 39 H 0.088 0.912 40 H 0.135 0.865 41 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -14.861 -1.978 -2.424 15.186 hybrid contribution 1.529 -0.023 -0.046 1.530 sum -13.331 -2.001 -2.469 13.705 Atomic orbital electron populations 1.21809 0.93574 1.02392 1.02142 1.21053 0.96459 0.95715 0.97419 1.21937 1.00574 0.96603 1.01904 1.20713 0.88867 1.02229 0.98844 1.20188 0.96834 0.93680 0.96994 1.21173 0.93573 0.98809 1.00586 1.21391 0.94188 0.97992 0.99161 1.18942 0.90644 0.96253 1.00377 1.20475 0.93611 0.91231 0.93698 1.21622 0.95365 1.02017 1.13638 1.21231 0.93752 0.97289 0.95921 1.21995 0.99494 0.99000 1.11582 1.19048 0.88953 0.92342 0.90189 1.19923 0.94578 1.02823 1.32811 0.89396 1.26944 0.96157 1.01376 0.95110 1.70192 1.10413 1.27756 1.28917 0.85206 0.78547 0.76600 0.78983 1.18411 1.19212 1.18408 1.68714 1.05896 1.26228 1.20548 1.21568 0.95461 0.97701 0.97402 1.21102 0.92288 0.99671 1.01364 0.92282 0.92343 0.91736 0.91640 0.92229 0.94220 0.92448 0.90567 0.89324 0.83057 0.84814 0.85325 0.84563 0.87178 0.91170 0.86544 0.85379 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.96 9.19 71.98 0.66 -1.30 16 2 C -0.09 -1.62 2.91 -10.79 -0.03 -1.65 16 3 C -0.15 -3.21 8.76 71.98 0.63 -2.58 16 4 C -0.07 -1.37 4.84 29.85 0.14 -1.22 16 5 C -0.08 -2.13 4.72 -19.82 -0.09 -2.22 16 6 C -0.12 -3.48 9.68 22.24 0.22 -3.26 16 7 C -0.11 -3.79 9.42 22.49 0.21 -3.58 16 8 C -0.06 -2.72 5.88 -20.04 -0.12 -2.84 16 9 C 0.15 7.88 6.74 42.17 0.28 8.17 16 10 C -0.30 -13.91 9.48 22.78 0.22 -13.70 16 11 C -0.06 -2.62 10.15 22.39 0.23 -2.39 16 12 C -0.30 -15.23 9.83 22.88 0.22 -15.00 16 13 C 0.22 12.73 6.55 40.26 0.26 13.00 16 14 C -0.47 -26.27 9.14 23.47 0.21 -26.06 16 15 H 0.09 4.58 7.85 -2.91 -0.02 4.56 16 16 C 0.03 1.35 5.50 85.28 0.47 1.82 16 17 N -0.75 -40.96 11.11 21.83 0.24 -40.72 16 18 Si 0.99 38.93 29.56 68.60 2.03 40.95 16 19 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 20 H -0.27 -10.02 7.11 99.48 0.71 -9.31 16 21 H -0.26 -9.92 7.11 99.48 0.71 -9.22 16 22 N -0.50 -28.98 6.92 -178.20 -1.23 -30.22 16 23 C -0.10 -4.46 9.57 22.49 0.22 -4.24 16 24 C -0.13 -4.27 7.94 22.24 0.18 -4.09 16 25 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.06 0.76 8.14 -2.38 -0.02 0.74 16 27 H 0.06 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.07 1.28 8.14 -2.39 -0.02 1.26 16 29 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 30 H 0.04 1.03 6.26 -2.39 -0.01 1.02 16 31 H 0.06 1.09 8.14 -2.38 -0.02 1.07 16 32 H 0.08 1.42 8.08 -2.39 -0.02 1.41 16 33 H 0.09 1.43 8.08 -2.39 -0.02 1.41 16 34 H 0.15 3.11 8.06 -2.91 -0.02 3.09 16 35 H 0.13 4.18 6.17 -2.91 -0.02 4.16 16 36 H 0.13 4.93 6.17 -2.91 -0.02 4.91 16 37 H 0.14 4.94 8.06 -2.91 -0.02 4.92 16 38 H 0.11 5.15 8.06 -2.91 -0.02 5.13 16 39 H 0.28 13.74 8.29 -92.71 -0.77 12.97 16 40 H 0.12 5.88 7.18 -2.91 -0.02 5.85 16 41 H 0.13 3.83 8.03 -2.91 -0.02 3.81 16 Total: -1.00 -65.92 338.33 5.96 -59.96 By element: Atomic # 1 Polarization: 30.16 SS G_CDS: 1.01 Total: 31.17 kcal Atomic # 6 Polarization: -65.06 SS G_CDS: 3.91 Total: -61.15 kcal Atomic # 7 Polarization: -69.95 SS G_CDS: -0.99 Total: -70.94 kcal Atomic # 14 Polarization: 38.93 SS G_CDS: 2.03 Total: 40.95 kcal Total: -65.92 5.96 -59.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241324304.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.341 kcal (2) G-P(sol) polarization free energy of solvation -65.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.425 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.958 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.958 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.383 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds