Wall clock time and date at job start Tue Mar 31 2020 05:16:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47401 * 2 1 4 4 C 1.52998 * 109.46783 * 119.99832 * 2 1 3 5 5 C 1.50708 * 109.47125 * 174.99850 * 4 2 1 6 6 C 1.38391 * 119.85204 * 90.00216 * 5 4 2 7 7 C 1.37933 * 120.14681 * 179.97438 * 6 5 4 8 8 C 1.39609 * 119.84866 * 359.97438 * 7 6 5 9 9 C 1.47968 * 120.14233 * 179.97438 * 8 7 6 10 10 C 1.39890 * 119.45345 * 179.97438 * 9 8 7 11 11 C 1.36602 * 119.47041 * 180.02562 * 10 9 8 12 12 C 1.41295 * 118.41438 * 0.27342 * 11 10 9 13 13 C 1.41058 * 120.55693 * 179.72614 * 12 11 10 14 14 H 1.07998 * 120.00020 * 203.69254 * 13 12 11 15 15 C 1.40024 * 119.99546 * 23.69860 * 13 12 11 16 16 N 1.30781 * 120.00405 * 17.62031 * 15 13 12 17 17 Si 1.86806 * 119.99704 * 197.61611 * 15 13 12 18 18 H 1.48508 * 109.46662 * 60.00476 * 17 15 13 19 19 H 1.48497 * 109.47066 * 180.02562 * 17 15 13 20 20 H 1.48496 * 109.47531 * 300.00215 * 17 15 13 21 21 C 1.40955 * 118.89020 * 359.45797 * 12 11 10 22 22 N 1.31261 * 120.39825 * 0.55703 * 21 12 11 23 23 C 1.39604 * 119.71401 * 0.25974 * 8 7 6 24 24 C 1.37941 * 119.85015 * 359.48554 * 23 8 7 25 25 H 1.08996 * 109.47428 * 300.00195 * 1 2 3 26 26 H 1.08998 * 109.46963 * 60.00271 * 1 2 3 27 27 H 1.08997 * 109.47223 * 180.02562 * 1 2 3 28 28 H 1.08996 * 109.47428 * 239.99805 * 2 1 3 29 29 H 1.08993 * 109.47347 * 180.02562 * 3 2 1 30 30 H 1.08998 * 109.46840 * 299.99804 * 3 2 1 31 31 H 1.09001 * 109.46583 * 59.99768 * 3 2 1 32 32 H 1.09004 * 109.47262 * 55.00335 * 4 2 1 33 33 H 1.08996 * 109.47551 * 294.99811 * 4 2 1 34 34 H 1.08003 * 119.92449 * 359.95322 * 6 5 4 35 35 H 1.07991 * 120.07577 * 180.02562 * 7 6 5 36 36 H 1.08005 * 120.26108 * 0.02562 * 10 9 8 37 37 H 1.08004 * 120.79289 * 180.02562 * 11 10 9 38 38 H 0.97000 * 120.00675 * 179.97438 * 16 15 13 39 39 H 1.08000 * 119.79749 * 180.24346 * 21 12 11 40 40 H 1.07999 * 120.07465 * 179.72626 * 23 8 7 41 41 H 1.07999 * 119.92232 * 180.23039 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0399 -0.7212 1.2493 5 6 3.5419 -0.8294 1.1890 6 6 4.3270 0.1740 1.7291 7 6 5.7023 0.0810 1.6777 8 6 6.3017 -1.0290 1.0796 9 6 7.7764 -1.1353 1.0205 10 6 8.3619 -2.2540 0.4183 11 6 9.7232 -2.3527 0.3639 12 6 10.4958 -1.3133 0.9289 13 6 11.9049 -1.3717 0.9030 14 1 12.4817 -0.8202 1.6307 15 6 12.5558 -2.1447 -0.0662 16 7 11.9117 -2.5277 -1.1381 17 14 14.3443 -2.6288 0.1716 18 1 14.4797 -3.4264 1.4170 19 1 14.7960 -3.4395 -0.9876 20 1 15.1790 -1.4049 0.2744 21 6 9.8348 -0.2142 1.5137 22 7 8.5234 -0.1656 1.5412 23 6 5.5039 -2.0354 0.5324 24 6 4.1297 -1.9325 0.5951 25 1 -0.3634 0.5138 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 3.1300 1.4425 -0.0005 30 1 1.6768 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6053 -1.7198 1.2952 33 1 1.7516 -0.1583 2.1370 34 1 3.8619 1.0321 2.1915 35 1 6.3139 0.8645 2.0999 36 1 7.7424 -3.0335 -0.0003 37 1 10.1977 -3.2068 -0.0963 38 1 12.3627 -3.0629 -1.8097 39 1 10.4110 0.5904 1.9463 40 1 5.9614 -2.8945 0.0644 41 1 3.5114 -2.7121 0.1754 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241325257.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:20 Heat of formation + Delta-G solvation = 17.394482 kcal Electronic energy + Delta-G solvation = -20412.986712 eV Core-core repulsion = 17448.808614 eV Total energy + Delta-G solvation = -2964.178098 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.26373 -38.13131 -36.02417 -34.27511 -31.79013 -30.99645 -30.20445 -29.49323 -27.18269 -26.80308 -24.76190 -22.72819 -22.03059 -20.93044 -20.34759 -19.76112 -17.53252 -16.48574 -15.57525 -15.42721 -15.00747 -14.53598 -14.29266 -14.15751 -13.67511 -13.50938 -13.21946 -12.86164 -12.77189 -12.46984 -12.27172 -12.03641 -11.80876 -11.71401 -11.68278 -11.40325 -11.32191 -11.04868 -10.85771 -10.75422 -10.67039 -10.41360 -10.31997 -9.93112 -9.53825 -8.55305 -8.39777 -8.35833 -8.09769 -7.27327 -6.99818 -4.58144 1.58106 1.97968 2.66571 2.91163 2.93184 2.95490 3.15121 3.71228 4.20946 4.62312 4.84769 4.88125 4.97546 5.28876 5.40005 5.41913 5.50597 5.57162 5.62299 5.64799 5.68666 5.79409 5.87630 5.92027 5.99470 6.07255 6.07908 6.17825 6.31596 6.35570 6.46762 6.53809 6.63870 6.71792 6.79042 6.86651 6.99889 7.09708 7.15125 7.33405 7.50960 7.69494 7.76000 7.86319 8.28659 8.48153 8.58615 9.53582 9.85028 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.046175 B = 0.002964 C = 0.002888 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 606.241362 B = 9443.828998 C = 9692.398440 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.150 4.150 4 C -0.068 4.068 5 C -0.114 4.114 6 C -0.114 4.114 7 C -0.113 4.113 8 C 0.018 3.982 9 C -0.009 4.009 10 C -0.121 4.121 11 C -0.145 4.145 12 C 0.069 3.931 13 C -0.434 4.434 14 H 0.087 0.913 15 C 0.072 3.928 16 N -0.776 5.776 17 Si 0.916 3.084 18 H -0.260 1.260 19 H -0.276 1.276 20 H -0.261 1.261 21 C -0.018 4.018 22 N -0.448 5.448 23 C -0.133 4.133 24 C -0.114 4.114 25 H 0.052 0.948 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.070 0.930 29 H 0.064 0.936 30 H 0.048 0.952 31 H 0.051 0.949 32 H 0.065 0.935 33 H 0.065 0.935 34 H 0.111 0.889 35 H 0.126 0.874 36 H 0.101 0.899 37 H 0.127 0.873 38 H 0.288 0.712 39 H 0.129 0.871 40 H 0.119 0.881 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.948 0.840 0.836 13.002 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.207 4.207 4 C -0.106 4.106 5 C -0.114 4.114 6 C -0.132 4.132 7 C -0.131 4.131 8 C 0.017 3.983 9 C -0.143 4.143 10 C -0.142 4.142 11 C -0.170 4.170 12 C 0.064 3.936 13 C -0.463 4.463 14 H 0.105 0.895 15 C -0.149 4.149 16 N -0.399 5.399 17 Si 0.740 3.260 18 H -0.185 1.185 19 H -0.200 1.200 20 H -0.186 1.186 21 C -0.183 4.183 22 N -0.155 5.155 23 C -0.152 4.152 24 C -0.132 4.132 25 H 0.072 0.928 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.088 0.912 29 H 0.083 0.917 30 H 0.068 0.932 31 H 0.070 0.930 32 H 0.083 0.917 33 H 0.084 0.916 34 H 0.129 0.871 35 H 0.144 0.856 36 H 0.119 0.881 37 H 0.145 0.855 38 H 0.099 0.901 39 H 0.147 0.853 40 H 0.136 0.864 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -13.337 1.407 0.964 13.446 hybrid contribution 1.364 -1.030 -0.519 1.786 sum -11.973 0.376 0.445 11.987 Atomic orbital electron populations 1.21854 0.95570 1.01442 1.01519 1.21091 0.94884 0.96694 0.98378 1.21910 1.02203 0.95585 1.01027 1.20569 0.91847 1.00419 0.97734 1.19658 0.94749 0.95565 1.01457 1.20861 0.93581 0.98168 1.00623 1.21241 0.93836 0.98273 0.99785 1.18691 0.91545 0.93276 0.94783 1.18812 0.90877 0.95371 1.09201 1.21314 0.95696 0.97645 0.99505 1.21332 0.92050 0.99780 1.03878 1.18614 0.94357 0.90645 0.89999 1.19655 0.91540 1.23398 1.11657 0.89504 1.26096 1.01539 0.93589 0.93672 1.69771 1.39176 1.25399 1.05546 0.86214 0.80833 0.79758 0.79210 1.18466 1.20042 1.18582 1.22454 0.89127 0.98358 1.08374 1.66909 1.07654 1.26994 1.13968 1.21160 0.93170 0.99238 1.01666 1.20748 0.94390 0.97641 1.00444 0.92843 0.92894 0.92881 0.91201 0.91682 0.93246 0.93009 0.91674 0.91627 0.87053 0.85564 0.88088 0.85545 0.90110 0.85334 0.86359 0.87053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.19 37.16 0.34 -0.91 16 2 C -0.09 -0.96 2.91 -90.62 -0.26 -1.22 16 3 C -0.15 -1.61 8.75 37.16 0.33 -1.28 16 4 C -0.07 -0.77 4.83 -27.88 -0.13 -0.91 16 5 C -0.11 -1.65 4.72 -104.51 -0.49 -2.14 16 6 C -0.11 -1.79 7.94 -39.64 -0.31 -2.10 16 7 C -0.11 -2.11 9.57 -39.18 -0.38 -2.49 16 8 C 0.02 0.37 5.88 -104.89 -0.62 -0.25 16 9 C -0.01 -0.21 6.74 -82.75 -0.56 -0.77 16 10 C -0.12 -2.85 9.38 -39.55 -0.37 -3.22 16 11 C -0.15 -3.67 8.74 -39.01 -0.34 -4.01 16 12 C 0.07 1.77 5.59 -106.64 -0.60 1.17 16 13 C -0.43 -10.74 9.07 -37.84 -0.34 -11.08 16 14 H 0.09 2.02 7.91 -52.49 -0.41 1.60 16 15 C 0.07 1.68 5.17 -17.33 -0.09 1.59 16 16 N -0.78 -18.73 10.92 55.55 0.61 -18.12 16 17 Si 0.92 17.24 29.60 -169.99 -5.03 12.21 16 18 H -0.26 -4.88 7.11 56.52 0.40 -4.48 16 19 H -0.28 -5.06 7.11 56.52 0.40 -4.66 16 20 H -0.26 -4.86 7.11 56.52 0.40 -4.45 16 21 C -0.02 -0.44 10.97 -16.77 -0.18 -0.63 16 22 N -0.45 -11.06 9.39 -9.10 -0.09 -11.14 16 23 C -0.13 -2.39 9.42 -39.18 -0.37 -2.76 16 24 C -0.11 -1.75 9.68 -39.64 -0.38 -2.14 16 25 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 29 H 0.06 0.82 6.26 -51.93 -0.33 0.49 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 33 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 34 H 0.11 1.49 8.03 -52.48 -0.42 1.07 16 35 H 0.13 2.44 7.52 -52.49 -0.39 2.05 16 36 H 0.10 2.09 6.15 -52.48 -0.32 1.77 16 37 H 0.13 3.21 6.19 -52.48 -0.32 2.88 16 38 H 0.29 6.27 8.30 -40.82 -0.34 5.93 16 39 H 0.13 2.92 8.06 -52.49 -0.42 2.49 16 40 H 0.12 2.01 6.15 -52.49 -0.32 1.69 16 41 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 337.43 15.07 5.08 5.08 Total: -1.00 -26.60 337.43 -10.07 -36.68 By element: Atomic # 1 Polarization: 14.32 SS G_CDS: -5.88 Total: 8.43 kcal Atomic # 6 Polarization: -28.37 SS G_CDS: -4.77 Total: -33.14 kcal Atomic # 7 Polarization: -29.79 SS G_CDS: 0.52 Total: -29.27 kcal Atomic # 14 Polarization: 17.24 SS G_CDS: -5.03 Total: 12.21 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -26.60 -10.07 -36.68 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241325257.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.070 kcal (2) G-P(sol) polarization free energy of solvation -26.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.075 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.675 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds