Wall clock time and date at job start Tue Mar 31 2020 05:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47321 * 2 1 4 4 C 1.52994 * 109.46938 * 120.00184 * 2 1 3 5 5 C 1.50703 * 109.47399 * 64.99861 * 4 2 1 6 6 C 1.38400 * 119.85430 * 89.99669 * 5 4 2 7 7 C 1.37927 * 120.14489 * 179.97438 * 6 5 4 8 8 C 1.39619 * 119.85514 * 0.02562 * 7 6 5 9 9 C 1.47971 * 120.14765 * 179.97438 * 8 7 6 10 10 C 1.40259 * 120.34932 * 180.20321 * 9 8 7 11 11 C 1.36682 * 118.60683 * 180.26880 * 10 9 8 12 12 C 1.40879 * 119.25231 * 359.75881 * 11 10 9 13 13 C 1.40986 * 119.67981 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99986 * 353.67772 * 13 12 11 15 15 C 1.40111 * 120.00160 * 173.67979 * 13 12 11 16 16 N 1.30710 * 119.99458 * 6.30350 * 15 13 12 17 17 Si 1.86799 * 120.00265 * 186.30108 * 15 13 12 18 18 H 1.48497 * 109.46900 * 94.98295 * 17 15 13 19 19 H 1.48496 * 109.47233 * 214.98549 * 17 15 13 20 20 H 1.48505 * 109.46788 * 334.98411 * 17 15 13 21 21 N 1.33781 * 120.63661 * 0.02562 * 12 11 10 22 22 C 1.31193 * 121.50585 * 359.97438 * 21 12 11 23 23 C 1.39619 * 119.71007 * 0.25352 * 8 7 6 24 24 C 1.37940 * 119.84938 * 359.46932 * 23 8 7 25 25 H 1.09004 * 109.46981 * 59.99942 * 1 2 3 26 26 H 1.09002 * 109.47124 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46741 * 300.00036 * 1 2 3 28 28 H 1.09004 * 109.46741 * 239.99964 * 2 1 3 29 29 H 1.08998 * 109.47343 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46850 * 300.00415 * 3 2 1 31 31 H 1.08999 * 109.47341 * 59.99791 * 3 2 1 32 32 H 1.08999 * 109.47362 * 304.99502 * 4 2 1 33 33 H 1.08998 * 109.47080 * 184.99780 * 4 2 1 34 34 H 1.07996 * 119.92382 * 0.02621 * 6 5 4 35 35 H 1.08005 * 120.06921 * 180.02562 * 7 6 5 36 36 H 1.07999 * 120.69810 * 0.03229 * 10 9 8 37 37 H 1.07996 * 120.37337 * 179.77294 * 11 10 9 38 38 H 0.97006 * 119.99578 * 180.02562 * 16 15 13 39 39 H 1.08000 * 119.64935 * 179.97438 * 22 21 12 40 40 H 1.07999 * 120.07553 * 179.74604 * 23 8 7 41 41 H 1.07995 * 119.92683 * 180.25855 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 -2.1733 1.1888 6 6 2.4846 -3.0952 0.5935 7 6 2.1260 -4.4257 0.5355 8 6 0.9088 -4.8418 1.0785 9 6 0.5173 -6.2676 1.0192 10 6 -0.7063 -6.6895 1.5596 11 6 -1.0297 -8.0157 1.4903 12 6 -0.1321 -8.9121 0.8776 13 6 -0.4564 -10.2821 0.8017 14 1 -1.3382 -10.6567 1.3003 15 6 0.3653 -11.1575 0.0796 16 7 1.4954 -10.7308 -0.4198 17 14 -0.1542 -12.9345 -0.1696 18 1 -0.8454 -13.0694 -1.4769 19 1 1.0463 -13.8083 -0.1518 20 1 -1.0765 -13.3382 0.9220 21 7 1.0254 -8.4761 0.3679 22 6 1.3633 -7.2094 0.4194 23 6 0.0600 -3.9058 1.6724 24 6 0.4334 -2.5791 1.7289 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8899 32 1 1.6054 -0.2618 2.1369 33 1 3.1263 -0.6444 1.2951 34 1 3.4260 -2.7721 0.1743 35 1 2.7852 -5.1442 0.0710 36 1 -1.3772 -5.9820 2.0241 37 1 -1.9629 -8.3723 1.9005 38 1 2.0641 -11.3368 -0.9201 39 1 2.3054 -6.8903 -0.0012 40 1 -0.8847 -4.2205 2.0906 41 1 -0.2203 -1.8547 2.1918 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241326131.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:45 Heat of formation + Delta-G solvation = 26.746047 kcal Electronic energy + Delta-G solvation = -20426.784503 eV Core-core repulsion = 17463.011920 eV Total energy + Delta-G solvation = -2963.772583 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -39.25812 -38.05074 -36.06092 -33.88183 -31.95641 -30.97957 -30.17356 -29.36788 -27.19751 -26.78835 -24.71646 -22.91553 -21.94875 -20.93119 -20.26261 -19.74782 -17.64408 -16.35017 -15.65724 -15.31510 -14.95648 -14.58403 -14.26931 -14.16171 -13.64795 -13.39753 -13.14823 -12.87976 -12.61343 -12.52648 -12.26163 -12.03002 -11.95351 -11.82594 -11.47235 -11.31405 -11.15120 -10.94284 -10.86739 -10.72354 -10.68808 -10.36730 -10.22893 -9.99587 -9.59476 -8.72223 -8.42233 -8.24639 -7.68342 -7.13898 -6.59713 -4.63064 1.60407 1.94917 2.74764 2.98991 3.01295 3.02620 3.15606 3.80257 4.30382 4.70546 4.83800 4.87823 4.96805 5.27485 5.39875 5.45049 5.52002 5.60473 5.64498 5.68838 5.77658 5.80941 5.86562 5.91311 5.94233 5.99269 6.06476 6.11956 6.17743 6.29545 6.34399 6.49012 6.61222 6.68184 6.72918 6.91746 6.97460 7.08030 7.09795 7.27804 7.46564 7.62787 7.75774 7.89804 8.06119 8.45812 8.75197 9.95131 10.11250 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.045420 B = 0.002981 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.314309 B = 9390.632903 C = 9712.459202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.092 4.092 3 C -0.147 4.147 4 C -0.067 4.067 5 C -0.127 4.127 6 C -0.105 4.105 7 C -0.145 4.145 8 C 0.031 3.969 9 C -0.277 4.277 10 C -0.036 4.036 11 C -0.272 4.272 12 C 0.251 3.749 13 C -0.409 4.409 14 H 0.088 0.912 15 C 0.063 3.937 16 N -0.700 5.700 17 Si 0.912 3.088 18 H -0.267 1.267 19 H -0.274 1.274 20 H -0.259 1.259 21 N -0.489 5.489 22 C 0.156 3.844 23 C -0.148 4.148 24 C -0.103 4.103 25 H 0.048 0.952 26 H 0.064 0.936 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.052 0.948 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.277 0.723 39 H 0.123 0.877 40 H 0.114 0.886 41 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.624 14.110 0.728 14.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.111 4.111 3 C -0.204 4.204 4 C -0.104 4.104 5 C -0.127 4.127 6 C -0.123 4.123 7 C -0.163 4.163 8 C 0.030 3.970 9 C -0.282 4.282 10 C -0.059 4.059 11 C -0.295 4.295 12 C 0.129 3.871 13 C -0.439 4.439 14 H 0.106 0.894 15 C -0.164 4.164 16 N -0.320 5.320 17 Si 0.736 3.264 18 H -0.192 1.192 19 H -0.199 1.199 20 H -0.183 1.183 21 N -0.201 5.201 22 C -0.013 4.013 23 C -0.167 4.167 24 C -0.122 4.122 25 H 0.067 0.933 26 H 0.083 0.917 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.071 0.929 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.128 0.872 35 H 0.136 0.864 36 H 0.117 0.883 37 H 0.119 0.881 38 H 0.088 0.912 39 H 0.140 0.860 40 H 0.132 0.868 41 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 1.328 13.340 0.229 13.408 hybrid contribution -0.811 -0.129 0.264 0.863 sum 0.517 13.211 0.493 13.230 Atomic orbital electron populations 1.21906 0.95291 1.02478 1.00978 1.21095 0.96125 0.95384 0.98457 1.21856 1.00772 0.96285 1.01488 1.20539 1.00374 0.91904 0.97598 1.19586 0.95798 0.94771 1.02536 1.20788 0.98852 0.93047 0.99602 1.21155 0.97177 0.95481 1.02533 1.18861 0.92510 0.92677 0.92994 1.19072 1.00014 0.92067 1.17078 1.20658 0.94529 0.95116 0.95597 1.21441 1.02205 0.94009 1.11819 1.18675 0.87363 0.93462 0.87643 1.19792 1.07593 0.91415 1.25050 0.89388 1.26206 0.94276 1.01242 0.94713 1.70125 1.06810 1.35851 1.19187 0.86228 0.79381 0.80939 0.79897 1.19229 1.19858 1.18292 1.68799 1.17274 1.13023 1.20974 1.22779 0.96534 0.89589 0.92403 1.21128 1.00107 0.92757 1.02684 1.20773 0.95952 0.95441 0.99984 0.93270 0.91742 0.93068 0.91207 0.92864 0.92916 0.92864 0.91766 0.91738 0.87180 0.86372 0.88348 0.88138 0.91164 0.86008 0.86759 0.87273 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 8.75 37.16 0.33 -1.23 16 2 C -0.09 -0.95 2.91 -90.62 -0.26 -1.21 16 3 C -0.15 -1.24 9.19 37.15 0.34 -0.90 16 4 C -0.07 -0.75 4.83 -27.88 -0.13 -0.88 16 5 C -0.13 -1.80 4.72 -104.50 -0.49 -2.30 16 6 C -0.10 -1.60 9.68 -39.64 -0.38 -1.98 16 7 C -0.15 -2.57 9.44 -39.18 -0.37 -2.94 16 8 C 0.03 0.60 5.88 -104.88 -0.62 -0.02 16 9 C -0.28 -6.22 5.92 -104.45 -0.62 -6.84 16 10 C -0.04 -0.80 9.46 -39.38 -0.37 -1.17 16 11 C -0.27 -6.56 9.76 -39.15 -0.38 -6.95 16 12 C 0.25 6.73 6.54 -84.98 -0.56 6.18 16 13 C -0.41 -10.56 9.11 -37.84 -0.34 -10.91 16 14 H 0.09 2.10 7.86 -52.48 -0.41 1.69 16 15 C 0.06 1.54 5.49 -17.33 -0.10 1.45 16 16 N -0.70 -18.02 11.47 55.56 0.64 -17.38 16 17 Si 0.91 17.78 29.57 -169.99 -5.03 12.75 16 18 H -0.27 -5.16 7.11 56.52 0.40 -4.76 16 19 H -0.27 -5.22 7.11 56.52 0.40 -4.82 16 20 H -0.26 -4.94 7.11 56.52 0.40 -4.54 16 21 N -0.49 -13.29 7.86 -10.84 -0.09 -13.37 16 22 C 0.16 3.77 10.60 -17.13 -0.18 3.59 16 23 C -0.15 -2.58 9.44 -39.18 -0.37 -2.95 16 24 C -0.10 -1.55 7.94 -39.63 -0.31 -1.86 16 25 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 26 H 0.06 0.78 6.26 -51.93 -0.33 0.45 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 29 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 31 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 32 H 0.06 0.68 8.08 -51.93 -0.42 0.26 16 33 H 0.06 0.67 8.08 -51.93 -0.42 0.26 16 34 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.12 2.01 6.22 -52.48 -0.33 1.69 16 36 H 0.10 1.90 6.30 -52.49 -0.33 1.57 16 37 H 0.10 2.21 8.06 -52.49 -0.42 1.79 16 38 H 0.28 6.40 8.29 -40.82 -0.34 6.06 16 39 H 0.12 2.65 6.21 -52.49 -0.33 2.33 16 40 H 0.11 1.88 6.25 -52.49 -0.33 1.56 16 41 H 0.11 1.39 8.03 -52.49 -0.42 0.97 16 LS Contribution 336.46 15.07 5.07 5.07 Total: -1.00 -27.83 336.46 -10.06 -37.89 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -5.83 Total: 5.96 kcal Atomic # 6 Polarization: -26.09 SS G_CDS: -4.83 Total: -30.92 kcal Atomic # 7 Polarization: -31.31 SS G_CDS: 0.55 Total: -30.75 kcal Atomic # 14 Polarization: 17.78 SS G_CDS: -5.03 Total: 12.75 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -27.83 -10.06 -37.89 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241326131.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.634 kcal (2) G-P(sol) polarization free energy of solvation -27.828 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.806 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.060 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.888 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds