Wall clock time and date at job start Tue Mar 31 2020 05:16:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.52994 * 109.47321 * 2 1 4 4 C 1.52994 * 109.46938 * 120.00184 * 2 1 3 5 5 C 1.50703 * 109.47399 * 64.99861 * 4 2 1 6 6 C 1.38400 * 119.85430 * 89.99669 * 5 4 2 7 7 C 1.37927 * 120.14489 * 179.97438 * 6 5 4 8 8 C 1.39619 * 119.85514 * 0.02562 * 7 6 5 9 9 C 1.47971 * 120.14765 * 179.97438 * 8 7 6 10 10 C 1.40259 * 120.34932 * 180.20321 * 9 8 7 11 11 C 1.36682 * 118.60683 * 180.26880 * 10 9 8 12 12 C 1.40879 * 119.25231 * 359.75881 * 11 10 9 13 13 C 1.40986 * 119.67981 * 179.97438 * 12 11 10 14 14 H 1.08005 * 119.99986 * 353.67772 * 13 12 11 15 15 C 1.40111 * 120.00160 * 173.67979 * 13 12 11 16 16 N 1.30710 * 119.99458 * 6.30350 * 15 13 12 17 17 Si 1.86799 * 120.00265 * 186.30108 * 15 13 12 18 18 H 1.48497 * 109.46900 * 94.98295 * 17 15 13 19 19 H 1.48496 * 109.47233 * 214.98549 * 17 15 13 20 20 H 1.48505 * 109.46788 * 334.98411 * 17 15 13 21 21 N 1.33781 * 120.63661 * 0.02562 * 12 11 10 22 22 C 1.31193 * 121.50585 * 359.97438 * 21 12 11 23 23 C 1.39619 * 119.71007 * 0.25352 * 8 7 6 24 24 C 1.37940 * 119.84938 * 359.46932 * 23 8 7 25 25 H 1.09004 * 109.46981 * 59.99942 * 1 2 3 26 26 H 1.09002 * 109.47124 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46741 * 300.00036 * 1 2 3 28 28 H 1.09004 * 109.46741 * 239.99964 * 2 1 3 29 29 H 1.08998 * 109.47343 * 180.02562 * 3 2 1 30 30 H 1.09002 * 109.46850 * 300.00415 * 3 2 1 31 31 H 1.08999 * 109.47341 * 59.99791 * 3 2 1 32 32 H 1.08999 * 109.47362 * 304.99502 * 4 2 1 33 33 H 1.08998 * 109.47080 * 184.99780 * 4 2 1 34 34 H 1.07996 * 119.92382 * 0.02621 * 6 5 4 35 35 H 1.08005 * 120.06921 * 180.02562 * 7 6 5 36 36 H 1.07999 * 120.69810 * 0.03229 * 10 9 8 37 37 H 1.07996 * 120.37337 * 179.77294 * 11 10 9 38 38 H 0.97006 * 119.99578 * 180.02562 * 16 15 13 39 39 H 1.08000 * 119.64935 * 179.97438 * 22 21 12 40 40 H 1.07999 * 120.07553 * 179.74604 * 23 8 7 41 41 H 1.07995 * 119.92683 * 180.25855 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 1.6413 -2.1733 1.1888 6 6 2.4846 -3.0952 0.5935 7 6 2.1260 -4.4257 0.5355 8 6 0.9088 -4.8418 1.0785 9 6 0.5173 -6.2676 1.0192 10 6 -0.7063 -6.6895 1.5596 11 6 -1.0297 -8.0157 1.4903 12 6 -0.1321 -8.9121 0.8776 13 6 -0.4564 -10.2821 0.8017 14 1 -1.3382 -10.6567 1.3003 15 6 0.3653 -11.1575 0.0796 16 7 1.4954 -10.7308 -0.4198 17 14 -0.1542 -12.9345 -0.1696 18 1 -0.8454 -13.0694 -1.4769 19 1 1.0463 -13.8083 -0.1518 20 1 -1.0765 -13.3382 0.9220 21 7 1.0254 -8.4761 0.3679 22 6 1.3633 -7.2094 0.4194 23 6 0.0600 -3.9058 1.6724 24 6 0.4334 -2.5791 1.7289 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5139 0.8900 28 1 1.8933 -0.5139 -0.8900 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6768 1.9563 0.8899 32 1 1.6054 -0.2618 2.1369 33 1 3.1263 -0.6444 1.2951 34 1 3.4260 -2.7721 0.1743 35 1 2.7852 -5.1442 0.0710 36 1 -1.3772 -5.9820 2.0241 37 1 -1.9629 -8.3723 1.9005 38 1 2.0641 -11.3368 -0.9201 39 1 2.3054 -6.8903 -0.0012 40 1 -0.8847 -4.2205 2.0906 41 1 -0.2203 -1.8547 2.1918 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241326131.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:45 Heat of formation + Delta-G solvation = 15.146183 kcal Electronic energy + Delta-G solvation = -20427.287511 eV Core-core repulsion = 17463.011920 eV Total energy + Delta-G solvation = -2964.275591 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.70485 -39.65158 -37.10299 -35.60944 -33.45092 -32.66658 -31.61545 -30.88472 -28.25816 -27.93281 -26.16919 -24.49669 -23.50080 -22.48706 -21.62138 -20.74449 -19.46433 -17.86218 -17.29738 -16.56375 -16.35209 -16.00479 -15.58448 -15.13906 -15.02650 -14.80951 -14.49619 -14.36114 -14.30506 -13.80858 -13.49368 -13.33972 -13.03819 -12.95193 -12.84190 -12.73311 -12.62768 -12.40287 -12.18405 -11.82975 -11.73380 -11.63384 -11.42911 -11.40098 -11.27712 -10.40312 -10.01890 -9.71220 -9.55290 -8.76688 -8.39695 -6.51738 0.11946 0.64556 1.04110 1.26474 1.38876 1.54277 1.58003 2.18468 2.71587 3.13186 3.90611 3.92009 3.94040 4.05753 4.13394 4.16824 4.20357 4.31770 4.39252 4.47987 4.59038 4.69832 4.81791 4.84013 4.84222 4.88854 4.98354 5.02144 5.11179 5.12802 5.13870 5.23333 5.26255 5.38164 5.45567 5.47912 5.53318 5.53805 5.59979 5.81750 5.85734 6.04558 6.07194 6.22162 6.29911 6.62776 6.87046 8.09418 8.34406 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.045420 B = 0.002981 C = 0.002882 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 616.314309 B = 9390.632903 C = 9712.459202 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 C -0.143 4.143 4 C -0.066 4.066 5 C -0.107 4.107 6 C -0.110 4.110 7 C -0.151 4.151 8 C -0.009 4.009 9 C -0.264 4.264 10 C -0.041 4.041 11 C -0.287 4.287 12 C 0.217 3.783 13 C -0.450 4.450 14 H 0.095 0.905 15 C 0.019 3.981 16 N -0.747 5.747 17 Si 0.993 3.007 18 H -0.263 1.263 19 H -0.266 1.266 20 H -0.252 1.252 21 N -0.522 5.522 22 C 0.128 3.872 23 C -0.149 4.149 24 C -0.104 4.104 25 H 0.054 0.946 26 H 0.044 0.956 27 H 0.062 0.938 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.079 0.921 33 H 0.077 0.923 34 H 0.135 0.865 35 H 0.114 0.886 36 H 0.130 0.870 37 H 0.115 0.885 38 H 0.283 0.717 39 H 0.134 0.866 40 H 0.121 0.879 41 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.437 16.831 1.270 16.884 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 C -0.200 4.200 4 C -0.103 4.103 5 C -0.108 4.108 6 C -0.128 4.128 7 C -0.169 4.169 8 C -0.010 4.010 9 C -0.269 4.269 10 C -0.065 4.065 11 C -0.309 4.309 12 C 0.094 3.906 13 C -0.480 4.480 14 H 0.113 0.887 15 C -0.204 4.204 16 N -0.368 5.368 17 Si 0.812 3.188 18 H -0.187 1.187 19 H -0.191 1.191 20 H -0.175 1.175 21 N -0.235 5.235 22 C -0.038 4.038 23 C -0.167 4.167 24 C -0.122 4.122 25 H 0.073 0.927 26 H 0.063 0.937 27 H 0.081 0.919 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.096 0.904 34 H 0.153 0.847 35 H 0.132 0.868 36 H 0.148 0.852 37 H 0.133 0.867 38 H 0.094 0.906 39 H 0.151 0.849 40 H 0.139 0.861 41 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 1.153 16.109 0.777 16.169 hybrid contribution -0.690 -0.534 0.136 0.884 sum 0.462 15.574 0.913 15.608 Atomic orbital electron populations 1.21913 0.95418 1.01452 1.01955 1.21069 0.95986 0.96469 0.97390 1.21815 1.01185 0.94833 1.02187 1.20632 1.01419 0.89553 0.98723 1.20053 0.94750 0.96414 0.99547 1.21091 1.00135 0.92068 0.99516 1.21278 0.96620 0.96792 1.02257 1.18847 0.94375 0.91464 0.96308 1.19411 0.99314 0.93622 1.14568 1.21004 0.95013 0.95066 0.95371 1.21647 1.02549 0.94669 1.12079 1.19138 0.88025 0.94713 0.88747 1.20117 1.08866 0.91906 1.27113 0.88670 1.27161 0.93823 1.05770 0.93659 1.70220 1.08216 1.37783 1.20534 0.85036 0.79101 0.74755 0.79882 1.18736 1.19062 1.17480 1.68728 1.18130 1.14487 1.22166 1.23087 0.97669 0.89508 0.93578 1.21296 0.99948 0.93501 1.01937 1.21087 0.96597 0.94873 0.99603 0.92686 0.93658 0.91869 0.92300 0.92234 0.92435 0.92021 0.90271 0.90444 0.84681 0.86791 0.85235 0.86726 0.90641 0.84892 0.86132 0.84449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.64 8.75 71.98 0.63 -2.01 16 2 C -0.09 -1.54 2.91 -10.80 -0.03 -1.57 16 3 C -0.14 -1.86 9.19 71.98 0.66 -1.20 16 4 C -0.07 -1.20 4.83 29.85 0.14 -1.05 16 5 C -0.11 -2.70 4.72 -19.79 -0.09 -2.79 16 6 C -0.11 -3.10 9.68 22.23 0.22 -2.89 16 7 C -0.15 -5.25 9.44 22.53 0.21 -5.04 16 8 C -0.01 -0.35 5.88 -20.03 -0.12 -0.47 16 9 C -0.26 -12.11 5.92 -19.76 -0.12 -12.23 16 10 C -0.04 -1.86 9.46 22.40 0.21 -1.65 16 11 C -0.29 -14.29 9.76 22.55 0.22 -14.07 16 12 C 0.22 12.23 6.54 40.17 0.26 12.50 16 13 C -0.45 -24.34 9.11 23.40 0.21 -24.13 16 14 H 0.10 4.74 7.86 -2.91 -0.02 4.72 16 15 C 0.02 0.95 5.49 85.31 0.47 1.42 16 16 N -0.75 -40.33 11.47 21.85 0.25 -40.08 16 17 Si 0.99 37.43 29.57 68.60 2.03 39.46 16 18 H -0.26 -9.59 7.11 99.48 0.71 -8.89 16 19 H -0.27 -9.57 7.11 99.48 0.71 -8.86 16 20 H -0.25 -9.03 7.11 99.48 0.71 -8.32 16 21 N -0.52 -29.97 7.86 -188.22 -1.48 -31.45 16 22 C 0.13 6.49 10.60 85.24 0.90 7.39 16 23 C -0.15 -4.89 9.44 22.53 0.21 -4.67 16 24 C -0.10 -2.78 7.94 22.24 0.18 -2.60 16 25 H 0.05 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.04 0.97 6.26 -2.39 -0.01 0.95 16 27 H 0.06 0.96 8.14 -2.38 -0.02 0.94 16 28 H 0.06 1.14 8.14 -2.38 -0.02 1.12 16 29 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 30 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 32 H 0.08 1.27 8.08 -2.39 -0.02 1.25 16 33 H 0.08 1.27 8.08 -2.39 -0.02 1.25 16 34 H 0.14 3.10 8.06 -2.91 -0.02 3.07 16 35 H 0.11 3.95 6.22 -2.91 -0.02 3.93 16 36 H 0.13 4.88 6.30 -2.91 -0.02 4.86 16 37 H 0.11 5.17 8.06 -2.91 -0.02 5.15 16 38 H 0.28 13.68 8.29 -92.70 -0.77 12.91 16 39 H 0.13 6.14 6.21 -2.91 -0.02 6.12 16 40 H 0.12 3.73 6.25 -2.91 -0.02 3.71 16 41 H 0.14 2.92 8.03 -2.91 -0.02 2.89 16 Total: -1.00 -63.37 336.46 5.99 -57.38 By element: Atomic # 1 Polarization: 28.74 SS G_CDS: 1.02 Total: 29.76 kcal Atomic # 6 Polarization: -59.24 SS G_CDS: 4.17 Total: -55.06 kcal Atomic # 7 Polarization: -70.30 SS G_CDS: -1.23 Total: -71.53 kcal Atomic # 14 Polarization: 37.43 SS G_CDS: 2.03 Total: 39.46 kcal Total: -63.37 5.99 -57.38 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241326131.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.526 kcal (2) G-P(sol) polarization free energy of solvation -63.368 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.989 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.379 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds