Wall clock time and date at job start Tue Mar 31 2020 05:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47192 * 2 1 4 4 C 1.53003 * 109.47003 * 120.00420 * 2 1 3 5 5 C 1.50701 * 109.46875 * 174.99914 * 4 2 1 6 6 C 1.38319 * 119.87826 * 269.72165 * 5 4 2 7 7 C 1.38021 * 120.12385 * 180.28307 * 6 5 4 8 8 C 1.39327 * 119.87531 * 359.97438 * 7 6 5 9 9 C 1.48409 * 120.12145 * 179.97438 * 8 7 6 10 10 C 1.39707 * 120.41419 * 180.02562 * 9 8 7 11 11 N 1.31908 * 121.15608 * 179.97438 * 10 9 8 12 12 C 1.31521 * 122.11908 * 359.97438 * 11 10 9 13 13 C 1.40776 * 120.66570 * 0.02562 * 12 11 10 14 14 C 1.41438 * 120.60658 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99791 * 23.39754 * 14 13 12 16 16 C 1.39936 * 119.99936 * 203.39676 * 14 13 12 17 17 N 1.30824 * 120.00235 * 17.36430 * 16 14 13 18 18 Si 1.86804 * 119.99809 * 197.36625 * 16 14 13 19 19 H 1.48497 * 109.47191 * 59.99868 * 18 16 14 20 20 H 1.48504 * 109.46977 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46991 * 299.99574 * 18 16 14 22 22 C 1.39137 * 120.41007 * 359.73946 * 9 8 7 23 23 C 1.39333 * 119.76057 * 0.02562 * 8 7 6 24 24 C 1.38016 * 119.87956 * 0.02562 * 23 8 7 25 25 H 1.09000 * 109.47075 * 300.00017 * 1 2 3 26 26 H 1.08998 * 109.47329 * 59.99526 * 1 2 3 27 27 H 1.09000 * 109.47229 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47075 * 239.99983 * 2 1 3 29 29 H 1.09000 * 109.47125 * 60.00014 * 3 2 1 30 30 H 1.08997 * 109.47143 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47370 * 300.00448 * 3 2 1 32 32 H 1.08995 * 109.47576 * 54.99764 * 4 2 1 33 33 H 1.09004 * 109.46873 * 294.99413 * 4 2 1 34 34 H 1.08002 * 119.93871 * 0.26164 * 6 5 4 35 35 H 1.07999 * 120.06502 * 180.02562 * 7 6 5 36 36 H 1.08007 * 119.42113 * 359.97438 * 10 9 8 37 37 H 1.08002 * 119.67506 * 180.02562 * 12 11 10 38 38 H 0.96997 * 120.00616 * 179.97438 * 17 16 14 39 39 H 1.08002 * 120.95031 * 0.03102 * 22 9 8 40 40 H 1.08004 * 120.05922 * 180.02562 * 23 8 7 41 41 H 1.08000 * 119.94208 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5419 -0.8295 1.1888 6 6 4.1301 -1.9338 0.5990 7 6 5.5051 -2.0408 0.5462 8 6 6.3009 -1.0336 1.0878 9 6 7.7800 -1.1434 1.0344 10 6 8.5839 -0.1373 1.5761 11 7 9.8998 -0.2200 1.5371 12 6 10.5202 -1.2438 0.9924 13 6 9.7912 -2.3044 0.4219 14 6 10.4598 -3.4050 -0.1632 15 1 11.4698 -3.6440 0.1352 16 6 9.8124 -4.1842 -1.1285 17 7 8.7505 -3.7225 -1.7374 18 14 10.4645 -5.8838 -1.5479 19 1 10.4486 -6.7343 -0.3307 20 1 9.6076 -6.4987 -2.5933 21 1 11.8560 -5.7691 -2.0536 22 6 8.3833 -2.2524 0.4496 23 6 5.7032 0.0766 1.6807 24 6 4.3272 0.1728 1.7290 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6054 -1.7199 1.2951 33 1 1.7517 -0.1584 2.1370 34 1 3.5122 -2.7139 0.1795 35 1 5.9633 -2.9033 0.0851 36 1 8.1197 0.7234 2.0348 37 1 11.5998 -1.2712 0.9825 38 1 8.3019 -4.2624 -2.4068 39 1 7.7895 -3.0488 0.0258 40 1 6.3155 0.8604 2.1017 41 1 3.8628 1.0327 2.1887 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241326172.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:48 Heat of formation + Delta-G solvation = 17.632217 kcal Electronic energy + Delta-G solvation = -20762.105776 eV Core-core repulsion = 17797.937987 eV Total energy + Delta-G solvation = -2964.167789 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.39963 -38.12243 -36.10837 -34.14297 -32.38945 -30.80429 -30.20918 -29.20495 -27.21996 -25.86934 -25.66819 -22.81613 -22.18073 -20.96009 -20.24894 -19.79247 -17.46366 -16.24936 -15.61117 -15.37026 -15.04676 -14.92622 -14.38646 -14.29914 -13.79542 -13.39920 -13.16519 -13.03622 -12.69244 -12.43195 -12.23847 -12.10771 -11.80188 -11.78285 -11.59738 -11.37286 -11.26119 -11.14240 -10.92079 -10.73344 -10.66950 -10.50461 -10.36024 -9.86202 -9.42159 -9.02219 -8.48908 -8.15148 -7.89819 -7.18335 -6.88654 -4.55122 1.45902 1.86249 2.67489 2.97252 2.98914 3.01141 3.15937 3.80724 4.23861 4.60268 4.79654 4.82739 4.93086 5.21740 5.33571 5.36869 5.48801 5.52769 5.57271 5.62653 5.63383 5.75584 5.83638 5.86393 5.89505 5.99381 6.03582 6.11481 6.27117 6.29771 6.35538 6.40245 6.57514 6.69950 6.78721 6.84226 6.98222 7.00814 7.13963 7.24252 7.46206 7.65914 7.79186 7.88049 8.35569 8.61067 8.64465 9.57114 10.00084 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019833 B = 0.004086 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.443940 B = 6851.565013 C = 7963.407874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.150 4.150 4 C -0.071 4.071 5 C -0.100 4.100 6 C -0.117 4.117 7 C -0.111 4.111 8 C -0.012 4.012 9 C -0.093 4.093 10 C -0.025 4.025 11 N -0.470 5.470 12 C -0.018 4.018 13 C 0.061 3.939 14 C -0.450 4.450 15 H 0.084 0.916 16 C 0.075 3.925 17 N -0.790 5.790 18 Si 0.912 3.088 19 H -0.262 1.262 20 H -0.277 1.277 21 H -0.263 1.263 22 C -0.117 4.117 23 C -0.119 4.119 24 C -0.117 4.117 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.071 0.929 29 H 0.051 0.949 30 H 0.064 0.936 31 H 0.049 0.951 32 H 0.067 0.933 33 H 0.067 0.933 34 H 0.114 0.886 35 H 0.127 0.873 36 H 0.122 0.878 37 H 0.127 0.873 38 H 0.284 0.716 39 H 0.133 0.867 40 H 0.122 0.878 41 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.547 2.561 1.793 13.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.111 4.111 3 C -0.207 4.207 4 C -0.108 4.108 5 C -0.100 4.100 6 C -0.135 4.135 7 C -0.129 4.129 8 C -0.013 4.013 9 C -0.096 4.096 10 C -0.183 4.183 11 N -0.177 5.177 12 C -0.179 4.179 13 C 0.057 3.943 14 C -0.480 4.480 15 H 0.102 0.898 16 C -0.144 4.144 17 N -0.415 5.415 18 Si 0.736 3.264 19 H -0.186 1.186 20 H -0.202 1.202 21 H -0.188 1.188 22 C -0.142 4.142 23 C -0.137 4.137 24 C -0.135 4.135 25 H 0.072 0.928 26 H 0.072 0.928 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.083 0.917 31 H 0.069 0.931 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.132 0.868 35 H 0.145 0.855 36 H 0.139 0.861 37 H 0.144 0.856 38 H 0.096 0.904 39 H 0.151 0.849 40 H 0.140 0.860 41 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -13.233 3.180 1.957 13.750 hybrid contribution -0.215 -1.468 -0.770 1.671 sum -13.448 1.712 1.187 13.609 Atomic orbital electron populations 1.21853 0.95459 1.01516 1.01559 1.21091 0.95008 0.96672 0.98315 1.21913 1.02126 0.95595 1.01112 1.20610 0.91638 1.00668 0.97903 1.19718 0.94944 0.95198 1.00181 1.20872 0.94593 0.97704 1.00339 1.21353 0.93109 0.99167 0.99223 1.18975 0.92826 0.93641 0.95830 1.19478 0.90918 0.97525 1.01640 1.21781 0.89153 0.99525 1.07805 1.66936 1.10756 1.25330 1.14679 1.22544 0.98373 0.91395 1.05604 1.18474 0.92322 0.92595 0.90916 1.19536 1.01122 1.09127 1.18186 0.89824 1.25969 0.94214 0.99768 0.94419 1.69775 1.16733 1.36650 1.18318 0.86288 0.79859 0.81272 0.78955 1.18649 1.20185 1.18779 1.21851 0.94961 0.97318 1.00112 1.21216 0.94353 0.98015 1.00145 1.20832 0.93392 0.98377 1.00874 0.92819 0.92836 0.92827 0.91099 0.92981 0.91743 0.93150 0.91461 0.91459 0.86769 0.85496 0.86087 0.85586 0.90448 0.84942 0.86019 0.86748 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.23 9.19 37.16 0.34 -0.89 16 2 C -0.09 -0.95 2.91 -90.62 -0.26 -1.21 16 3 C -0.15 -1.55 8.75 37.15 0.33 -1.23 16 4 C -0.07 -0.78 4.84 -27.88 -0.13 -0.91 16 5 C -0.10 -1.41 4.72 -104.56 -0.49 -1.91 16 6 C -0.12 -1.83 9.68 -39.63 -0.38 -2.21 16 7 C -0.11 -2.07 9.44 -39.26 -0.37 -2.44 16 8 C -0.01 -0.24 5.88 -104.90 -0.62 -0.86 16 9 C -0.09 -2.18 5.88 -104.83 -0.62 -2.79 16 10 C -0.02 -0.58 10.60 -16.97 -0.18 -0.76 16 11 N -0.47 -11.72 10.32 -12.28 -0.13 -11.84 16 12 C -0.02 -0.46 10.96 -16.73 -0.18 -0.64 16 13 C 0.06 1.60 5.59 -106.71 -0.60 1.00 16 14 C -0.45 -11.42 9.08 -37.73 -0.34 -11.77 16 15 H 0.08 2.01 7.90 -52.49 -0.41 1.60 16 16 C 0.08 1.79 5.18 -17.35 -0.09 1.70 16 17 N -0.79 -19.40 10.92 55.55 0.61 -18.79 16 18 Si 0.91 17.80 29.59 -169.99 -5.03 12.76 16 19 H -0.26 -5.09 7.11 56.52 0.40 -4.69 16 20 H -0.28 -5.27 7.11 56.52 0.40 -4.87 16 21 H -0.26 -5.08 7.11 56.52 0.40 -4.68 16 22 C -0.12 -2.96 8.17 -38.23 -0.31 -3.27 16 23 C -0.12 -2.05 9.44 -39.26 -0.37 -2.42 16 24 C -0.12 -1.70 7.94 -39.63 -0.31 -2.02 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 29 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 30 H 0.06 0.77 6.27 -51.93 -0.33 0.45 16 31 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.07 0.69 8.08 -51.93 -0.42 0.27 16 33 H 0.07 0.68 8.08 -51.93 -0.42 0.26 16 34 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 35 H 0.13 2.48 6.26 -52.49 -0.33 2.15 16 36 H 0.12 2.48 6.20 -52.48 -0.33 2.16 16 37 H 0.13 2.93 8.06 -52.49 -0.42 2.51 16 38 H 0.28 6.36 8.30 -40.82 -0.34 6.02 16 39 H 0.13 3.35 4.44 -52.49 -0.23 3.11 16 40 H 0.12 1.95 6.22 -52.48 -0.33 1.63 16 41 H 0.11 1.39 8.03 -52.49 -0.42 0.97 16 LS Contribution 335.15 15.07 5.05 5.05 Total: -1.00 -27.11 335.15 -9.83 -36.94 By element: Atomic # 1 Polarization: 14.22 SS G_CDS: -5.73 Total: 8.49 kcal Atomic # 6 Polarization: -28.01 SS G_CDS: -4.60 Total: -32.61 kcal Atomic # 7 Polarization: -31.12 SS G_CDS: 0.48 Total: -30.64 kcal Atomic # 14 Polarization: 17.80 SS G_CDS: -5.03 Total: 12.76 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -27.11 -9.83 -36.94 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241326172.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.575 kcal (2) G-P(sol) polarization free energy of solvation -27.109 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.466 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.943 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds