Wall clock time and date at job start Tue Mar 31 2020 05:16:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47192 * 2 1 4 4 C 1.53003 * 109.47003 * 120.00420 * 2 1 3 5 5 C 1.50701 * 109.46875 * 174.99914 * 4 2 1 6 6 C 1.38319 * 119.87826 * 269.72165 * 5 4 2 7 7 C 1.38021 * 120.12385 * 180.28307 * 6 5 4 8 8 C 1.39327 * 119.87531 * 359.97438 * 7 6 5 9 9 C 1.48409 * 120.12145 * 179.97438 * 8 7 6 10 10 C 1.39707 * 120.41419 * 180.02562 * 9 8 7 11 11 N 1.31908 * 121.15608 * 179.97438 * 10 9 8 12 12 C 1.31521 * 122.11908 * 359.97438 * 11 10 9 13 13 C 1.40776 * 120.66570 * 0.02562 * 12 11 10 14 14 C 1.41438 * 120.60658 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99791 * 23.39754 * 14 13 12 16 16 C 1.39936 * 119.99936 * 203.39676 * 14 13 12 17 17 N 1.30824 * 120.00235 * 17.36430 * 16 14 13 18 18 Si 1.86804 * 119.99809 * 197.36625 * 16 14 13 19 19 H 1.48497 * 109.47191 * 59.99868 * 18 16 14 20 20 H 1.48504 * 109.46977 * 180.02562 * 18 16 14 21 21 H 1.48499 * 109.46991 * 299.99574 * 18 16 14 22 22 C 1.39137 * 120.41007 * 359.73946 * 9 8 7 23 23 C 1.39333 * 119.76057 * 0.02562 * 8 7 6 24 24 C 1.38016 * 119.87956 * 0.02562 * 23 8 7 25 25 H 1.09000 * 109.47075 * 300.00017 * 1 2 3 26 26 H 1.08998 * 109.47329 * 59.99526 * 1 2 3 27 27 H 1.09000 * 109.47229 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47075 * 239.99983 * 2 1 3 29 29 H 1.09000 * 109.47125 * 60.00014 * 3 2 1 30 30 H 1.08997 * 109.47143 * 180.02562 * 3 2 1 31 31 H 1.08998 * 109.47370 * 300.00448 * 3 2 1 32 32 H 1.08995 * 109.47576 * 54.99764 * 4 2 1 33 33 H 1.09004 * 109.46873 * 294.99413 * 4 2 1 34 34 H 1.08002 * 119.93871 * 0.26164 * 6 5 4 35 35 H 1.07999 * 120.06502 * 180.02562 * 7 6 5 36 36 H 1.08007 * 119.42113 * 359.97438 * 10 9 8 37 37 H 1.08002 * 119.67506 * 180.02562 * 12 11 10 38 38 H 0.96997 * 120.00616 * 179.97438 * 17 16 14 39 39 H 1.08002 * 120.95031 * 0.03102 * 22 9 8 40 40 H 1.08004 * 120.05922 * 180.02562 * 23 8 7 41 41 H 1.08000 * 119.94208 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 3.5419 -0.8295 1.1888 6 6 4.1301 -1.9338 0.5990 7 6 5.5051 -2.0408 0.5462 8 6 6.3009 -1.0336 1.0878 9 6 7.7800 -1.1434 1.0344 10 6 8.5839 -0.1373 1.5761 11 7 9.8998 -0.2200 1.5371 12 6 10.5202 -1.2438 0.9924 13 6 9.7912 -2.3044 0.4219 14 6 10.4598 -3.4050 -0.1632 15 1 11.4698 -3.6440 0.1352 16 6 9.8124 -4.1842 -1.1285 17 7 8.7505 -3.7225 -1.7374 18 14 10.4645 -5.8838 -1.5479 19 1 10.4486 -6.7343 -0.3307 20 1 9.6076 -6.4987 -2.5933 21 1 11.8560 -5.7691 -2.0536 22 6 8.3833 -2.2524 0.4496 23 6 5.7032 0.0766 1.6807 24 6 4.3272 0.1728 1.7290 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4424 -0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6054 -1.7199 1.2951 33 1 1.7517 -0.1584 2.1370 34 1 3.5122 -2.7139 0.1795 35 1 5.9633 -2.9033 0.0851 36 1 8.1197 0.7234 2.0348 37 1 11.5998 -1.2712 0.9825 38 1 8.3019 -4.2624 -2.4068 39 1 7.7895 -3.0488 0.0258 40 1 6.3155 0.8604 2.1017 41 1 3.8628 1.0327 2.1887 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241326172.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:47 Heat of formation + Delta-G solvation = 6.457002 kcal Electronic energy + Delta-G solvation = -20762.590370 eV Core-core repulsion = 17797.937987 eV Total energy + Delta-G solvation = -2964.652382 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -40.84498 -39.73836 -37.12268 -35.99788 -33.82567 -32.44885 -31.76551 -30.61323 -27.97277 -27.58164 -27.01181 -24.41729 -23.65356 -22.58279 -21.63182 -20.77511 -19.26334 -17.89433 -17.18253 -16.93430 -16.51694 -16.22720 -15.67857 -15.20062 -15.13046 -14.89085 -14.47021 -14.39492 -14.35245 -13.74213 -13.40011 -13.39241 -13.28053 -13.13422 -12.96950 -12.79131 -12.70039 -12.38597 -12.24434 -11.87035 -11.79353 -11.64276 -11.47566 -11.42925 -11.21104 -10.58121 -10.05594 -9.80266 -9.77726 -8.83915 -8.65485 -6.49192 -0.04597 0.55507 0.90982 1.24928 1.37341 1.48785 1.53788 2.16153 2.63942 2.99285 3.72285 3.81956 3.88727 3.95689 4.09758 4.11538 4.17149 4.25670 4.41636 4.53405 4.56846 4.62159 4.75626 4.82073 4.86631 4.89518 4.97297 4.98928 5.08124 5.11145 5.13497 5.18429 5.22854 5.29518 5.38215 5.47902 5.51833 5.57289 5.59688 5.76264 5.87509 5.89134 6.04344 6.16380 6.45716 6.71641 6.73765 7.64904 8.20764 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.019833 B = 0.004086 C = 0.003515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1411.443940 B = 6851.565013 C = 7963.407874 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.091 4.091 3 C -0.151 4.151 4 C -0.069 4.069 5 C -0.083 4.083 6 C -0.120 4.120 7 C -0.125 4.125 8 C -0.051 4.051 9 C -0.088 4.088 10 C -0.037 4.037 11 N -0.479 5.479 12 C -0.043 4.043 13 C 0.037 3.963 14 C -0.481 4.481 15 H 0.087 0.913 16 C 0.037 3.963 17 N -0.817 5.817 18 Si 0.987 3.013 19 H -0.259 1.259 20 H -0.266 1.266 21 H -0.257 1.257 22 C -0.144 4.144 23 C -0.119 4.119 24 C -0.111 4.111 25 H 0.063 0.937 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.056 0.944 29 H 0.066 0.934 30 H 0.044 0.956 31 H 0.054 0.946 32 H 0.079 0.921 33 H 0.086 0.914 34 H 0.136 0.864 35 H 0.105 0.895 36 H 0.150 0.850 37 H 0.136 0.864 38 H 0.293 0.707 39 H 0.125 0.875 40 H 0.131 0.869 41 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.243 2.699 2.115 16.601 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.110 4.110 3 C -0.209 4.209 4 C -0.106 4.106 5 C -0.083 4.083 6 C -0.138 4.138 7 C -0.143 4.143 8 C -0.052 4.052 9 C -0.090 4.090 10 C -0.195 4.195 11 N -0.186 5.186 12 C -0.204 4.204 13 C 0.033 3.967 14 C -0.510 4.510 15 H 0.105 0.895 16 C -0.180 4.180 17 N -0.442 5.442 18 Si 0.807 3.193 19 H -0.184 1.184 20 H -0.190 1.190 21 H -0.181 1.181 22 C -0.170 4.170 23 C -0.137 4.137 24 C -0.128 4.128 25 H 0.082 0.918 26 H 0.075 0.925 27 H 0.077 0.923 28 H 0.075 0.925 29 H 0.085 0.915 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.098 0.902 33 H 0.104 0.896 34 H 0.154 0.846 35 H 0.123 0.877 36 H 0.167 0.833 37 H 0.153 0.847 38 H 0.104 0.896 39 H 0.142 0.858 40 H 0.149 0.851 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -15.929 3.337 2.282 16.434 hybrid contribution 0.426 -1.414 -0.862 1.710 sum -15.503 1.922 1.421 15.686 Atomic orbital electron populations 1.21812 0.93717 1.02161 1.02297 1.21070 0.96422 0.96265 0.97230 1.21924 1.00843 0.95934 1.02152 1.20702 0.88862 1.01977 0.99071 1.20152 0.96993 0.93729 0.97423 1.21112 0.93331 0.99025 1.00292 1.21302 0.94602 0.98501 0.99873 1.18948 0.91098 0.95931 0.99217 1.19810 0.93195 0.96362 0.99629 1.22267 0.88840 1.00498 1.07878 1.66941 1.11642 1.25223 1.14803 1.22710 0.98959 0.91830 1.06877 1.18823 0.93098 0.93315 0.91484 1.19837 1.01767 1.10096 1.19330 0.89464 1.26852 0.94195 1.03315 0.93603 1.69831 1.17582 1.38197 1.18541 0.85164 0.79436 0.75825 0.78849 1.18352 1.19012 1.18083 1.21886 0.94838 0.98383 1.01893 1.21373 0.95788 0.97078 0.99469 1.21186 0.92266 0.99354 1.00025 0.91788 0.92452 0.92276 0.92506 0.91515 0.93645 0.92703 0.90242 0.89577 0.84640 0.87673 0.83295 0.84686 0.89631 0.85782 0.85126 0.83437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.19 71.98 0.66 -1.21 16 2 C -0.09 -1.57 2.91 -10.79 -0.03 -1.60 16 3 C -0.15 -2.65 8.75 71.98 0.63 -2.02 16 4 C -0.07 -1.24 4.84 29.85 0.14 -1.10 16 5 C -0.08 -2.11 4.72 -19.82 -0.09 -2.20 16 6 C -0.12 -3.59 9.68 22.24 0.22 -3.37 16 7 C -0.12 -4.76 9.44 22.48 0.21 -4.55 16 8 C -0.05 -2.08 5.88 -20.04 -0.12 -2.20 16 9 C -0.09 -4.26 5.88 -20.00 -0.12 -4.37 16 10 C -0.04 -1.76 10.60 85.04 0.90 -0.86 16 11 N -0.48 -24.58 10.32 -192.77 -1.99 -26.57 16 12 C -0.04 -2.30 10.96 85.36 0.94 -1.36 16 13 C 0.04 2.04 5.59 -21.21 -0.12 1.92 16 14 C -0.48 -25.44 9.08 23.47 0.21 -25.23 16 15 H 0.09 4.36 7.90 -2.91 -0.02 4.34 16 16 C 0.04 1.80 5.18 85.25 0.44 2.24 16 17 N -0.82 -41.40 10.92 21.82 0.24 -41.17 16 18 Si 0.99 36.71 29.59 68.60 2.03 38.74 16 19 H -0.26 -9.47 7.11 99.48 0.71 -8.76 16 20 H -0.27 -9.32 7.11 99.48 0.71 -8.61 16 21 H -0.26 -9.23 7.11 99.48 0.71 -8.52 16 22 C -0.14 -7.70 8.17 23.14 0.19 -7.52 16 23 C -0.12 -3.95 9.44 22.48 0.21 -3.74 16 24 C -0.11 -2.92 7.94 22.24 0.18 -2.74 16 25 H 0.06 0.73 8.14 -2.39 -0.02 0.71 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.06 1.14 8.14 -2.39 -0.02 1.12 16 29 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 30 H 0.04 0.97 6.27 -2.39 -0.01 0.95 16 31 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.08 1.30 8.08 -2.39 -0.02 1.28 16 33 H 0.09 1.30 8.08 -2.38 -0.02 1.28 16 34 H 0.14 3.40 8.06 -2.91 -0.02 3.38 16 35 H 0.11 4.39 6.26 -2.91 -0.02 4.37 16 36 H 0.15 6.07 6.20 -2.91 -0.02 6.05 16 37 H 0.14 6.61 8.06 -2.91 -0.02 6.59 16 38 H 0.29 13.36 8.30 -92.71 -0.77 12.59 16 39 H 0.12 6.70 4.44 -2.91 -0.01 6.69 16 40 H 0.13 3.99 6.22 -2.91 -0.02 3.97 16 41 H 0.15 2.94 8.03 -2.91 -0.02 2.91 16 Total: -1.00 -61.09 335.15 5.75 -55.34 By element: Atomic # 1 Polarization: 32.55 SS G_CDS: 1.02 Total: 33.58 kcal Atomic # 6 Polarization: -64.38 SS G_CDS: 4.45 Total: -59.92 kcal Atomic # 7 Polarization: -65.98 SS G_CDS: -1.75 Total: -67.73 kcal Atomic # 14 Polarization: 36.71 SS G_CDS: 2.03 Total: 38.74 kcal Total: -61.09 5.75 -55.34 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241326172.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.792 kcal (2) G-P(sol) polarization free energy of solvation -61.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.703 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.335 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds