Wall clock time and date at job start Tue Mar 31 2020 05:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47278 * 2 1 4 4 C 1.52997 * 109.47411 * 120.00632 * 2 1 3 5 5 C 1.50697 * 109.47173 * 64.99187 * 4 2 1 6 6 C 1.38408 * 119.84184 * 90.00870 * 5 4 2 7 7 C 1.37914 * 120.15074 * 180.02562 * 6 5 4 8 8 C 1.39680 * 119.84770 * 359.97438 * 7 6 5 9 9 C 1.47819 * 120.15604 * 180.02562 * 8 7 6 10 10 C 1.39684 * 120.64682 * 309.97477 * 9 8 7 11 11 C 1.38394 * 118.47319 * 180.02562 * 10 9 8 12 12 C 1.39054 * 119.72705 * 359.97438 * 11 10 9 13 13 N 1.31284 * 121.33873 * 0.02577 * 12 11 10 14 14 C 1.33693 * 121.63692 * 359.97438 * 13 12 11 15 15 C 1.40820 * 119.94040 * 179.97438 * 14 13 12 16 16 H 1.07994 * 120.00273 * 179.97438 * 15 14 13 17 17 C 1.40151 * 119.99825 * 0.02562 * 15 14 13 18 18 N 1.30698 * 120.00211 * 359.97438 * 17 15 14 19 19 Si 1.86797 * 120.00193 * 179.97438 * 17 15 14 20 20 H 1.48504 * 109.46989 * 0.02562 * 19 17 15 21 21 H 1.48501 * 109.46977 * 119.99826 * 19 17 15 22 22 H 1.48501 * 109.47370 * 240.00208 * 19 17 15 23 23 C 1.39688 * 119.69584 * 0.27426 * 8 7 6 24 24 C 1.37919 * 119.84323 * 359.47227 * 23 8 7 25 25 H 1.09003 * 109.46839 * 59.99205 * 1 2 3 26 26 H 1.08995 * 109.47162 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46967 * 300.00105 * 1 2 3 28 28 H 1.09008 * 109.46979 * 240.00421 * 2 1 3 29 29 H 1.09007 * 109.46922 * 180.02562 * 3 2 1 30 30 H 1.08996 * 109.47463 * 300.00329 * 3 2 1 31 31 H 1.08996 * 109.46786 * 60.00684 * 3 2 1 32 32 H 1.09006 * 109.46536 * 304.99510 * 4 2 1 33 33 H 1.08995 * 109.47598 * 184.99842 * 4 2 1 34 34 H 1.07994 * 119.92817 * 359.96919 * 6 5 4 35 35 H 1.08001 * 120.07498 * 179.97438 * 7 6 5 36 36 H 1.07995 * 120.76107 * 0.04170 * 10 9 8 37 37 H 1.07996 * 120.13647 * 180.02562 * 11 10 9 38 38 H 1.08007 * 119.33144 * 180.29683 * 12 11 10 39 39 H 0.96997 * 120.00557 * 179.97438 * 18 17 15 40 40 H 1.08004 * 120.08032 * 179.72985 * 23 8 7 41 41 H 1.08004 * 119.92444 * 180.23319 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 1.2491 5 6 1.6412 -2.1733 1.1887 6 6 2.4848 -3.0951 0.5934 7 6 2.1260 -4.4254 0.5341 8 6 0.9083 -4.8418 1.0772 9 6 0.5171 -6.2661 1.0179 10 6 0.5767 -6.9714 -0.1863 11 6 0.1994 -8.3029 -0.1905 12 6 -0.2252 -8.9029 0.9898 13 7 -0.2777 -8.2314 2.1167 14 6 0.0740 -6.9433 2.1825 15 6 0.0033 -6.2572 3.4102 16 1 0.2876 -5.2167 3.4646 17 6 -0.4349 -6.9250 4.5619 18 7 -0.7785 -8.1843 4.4962 19 14 -0.5280 -6.0152 6.1906 20 1 -0.0881 -4.6099 5.9985 21 1 -1.9273 -6.0317 6.6875 22 1 0.3567 -6.6804 7.1806 23 6 0.0595 -3.9053 1.6719 24 6 0.4333 -2.5790 1.7289 25 1 -0.3633 0.5140 -0.8899 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 3.1301 1.4424 -0.0005 30 1 1.6767 1.9564 -0.8899 31 1 1.6768 1.9562 0.8900 32 1 1.6054 -0.2618 2.1369 33 1 3.1263 -0.6445 1.2950 34 1 3.4258 -2.7718 0.1734 35 1 2.7850 -5.1435 0.0689 36 1 0.9098 -6.4887 -1.0932 37 1 0.2354 -8.8737 -1.1065 38 1 -0.5136 -9.9437 0.9803 39 1 -1.0814 -8.6466 5.2933 40 1 -0.8855 -4.2198 2.0898 41 1 -0.2203 -1.8544 2.1917 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241326234.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:50 Heat of formation + Delta-G solvation = 29.492799 kcal Electronic energy + Delta-G solvation = -21138.287500 eV Core-core repulsion = 18174.634025 eV Total energy + Delta-G solvation = -2963.653475 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.17642 -37.93725 -35.92988 -33.72993 -32.16014 -30.60710 -30.07066 -29.19247 -27.13408 -26.27329 -25.27841 -22.28392 -21.95724 -21.09977 -20.16133 -19.65631 -17.53959 -16.06231 -15.61555 -15.23994 -14.73084 -14.39929 -14.32747 -14.22442 -13.87862 -13.39599 -12.95218 -12.79662 -12.50720 -12.30425 -12.22239 -11.92780 -11.82968 -11.67765 -11.37096 -11.27128 -11.08085 -10.91889 -10.82949 -10.63773 -10.58832 -10.29237 -10.22314 -9.78402 -9.46311 -8.49726 -8.22931 -7.97628 -7.63186 -7.23241 -6.49074 -4.56884 1.85686 2.09955 2.71886 3.00732 3.05234 3.10357 3.17720 3.88836 4.44327 4.68503 4.89783 4.94062 5.02129 5.40652 5.48144 5.58066 5.59450 5.68959 5.71505 5.83029 5.83625 5.86839 5.94816 5.99745 6.07018 6.11196 6.15701 6.23551 6.29971 6.36432 6.42616 6.50029 6.70243 6.75743 6.84077 6.97499 7.10219 7.20067 7.30086 7.36475 7.54105 7.71006 7.78326 7.99739 8.19974 8.57091 8.86538 10.02830 10.21451 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.016330 B = 0.005183 C = 0.004175 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1714.252800 B = 5400.831836 C = 6705.482798 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.091 4.091 3 C -0.147 4.147 4 C -0.069 4.069 5 C -0.111 4.111 6 C -0.119 4.119 7 C -0.129 4.129 8 C 0.024 3.976 9 C -0.237 4.237 10 C -0.034 4.034 11 C -0.322 4.322 12 C 0.131 3.869 13 N -0.483 5.483 14 C 0.268 3.732 15 C -0.420 4.420 16 H 0.095 0.905 17 C 0.068 3.932 18 N -0.708 5.708 19 Si 0.902 3.098 20 H -0.257 1.257 21 H -0.271 1.271 22 H -0.272 1.272 23 C -0.108 4.108 24 C -0.118 4.118 25 H 0.048 0.952 26 H 0.065 0.935 27 H 0.051 0.949 28 H 0.069 0.931 29 H 0.052 0.948 30 H 0.051 0.949 31 H 0.053 0.947 32 H 0.065 0.935 33 H 0.064 0.936 34 H 0.108 0.892 35 H 0.112 0.888 36 H 0.096 0.904 37 H 0.094 0.906 38 H 0.118 0.882 39 H 0.274 0.726 40 H 0.125 0.875 41 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.022 12.028 -4.446 13.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.109 4.109 3 C -0.204 4.204 4 C -0.106 4.106 5 C -0.111 4.111 6 C -0.137 4.137 7 C -0.147 4.147 8 C 0.023 3.977 9 C -0.242 4.242 10 C -0.058 4.058 11 C -0.345 4.345 12 C -0.037 4.037 13 N -0.194 5.194 14 C 0.144 3.856 15 C -0.450 4.450 16 H 0.113 0.887 17 C -0.158 4.158 18 N -0.329 5.329 19 Si 0.726 3.274 20 H -0.180 1.180 21 H -0.197 1.197 22 H -0.197 1.197 23 C -0.126 4.126 24 C -0.136 4.136 25 H 0.067 0.933 26 H 0.084 0.916 27 H 0.070 0.930 28 H 0.087 0.913 29 H 0.071 0.929 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.084 0.916 33 H 0.083 0.917 34 H 0.126 0.874 35 H 0.130 0.870 36 H 0.114 0.886 37 H 0.113 0.887 38 H 0.136 0.864 39 H 0.085 0.915 40 H 0.143 0.857 41 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges 2.657 11.473 -3.496 12.285 hybrid contribution 0.274 0.552 -0.131 0.630 sum 2.931 12.026 -3.627 12.898 Atomic orbital electron populations 1.21910 0.95236 1.02581 1.00981 1.21082 0.96160 0.95330 0.98371 1.21858 1.00731 0.96325 1.01486 1.20569 1.00382 0.91986 0.97694 1.19631 0.95556 0.94663 1.01247 1.20737 0.99015 0.93103 1.00875 1.21222 0.96531 0.95251 1.01745 1.18715 0.92389 0.92590 0.93963 1.19397 1.16492 0.92892 0.95374 1.20883 0.95619 0.93729 0.95568 1.21218 1.17869 0.96437 0.98957 1.22607 0.93567 0.98430 0.89107 1.68767 1.18746 1.07583 1.24333 1.18532 0.87637 0.88070 0.91316 1.19881 1.35340 0.98459 0.91339 0.88694 1.26159 0.93848 0.94784 1.01038 1.70126 1.24325 1.08931 1.29490 0.86329 0.78822 0.81047 0.81187 1.18041 1.19654 1.19667 1.21393 1.00098 0.91992 0.99077 1.20846 0.96219 0.95738 1.00759 0.93331 0.91650 0.92990 0.91285 0.92903 0.92952 0.92825 0.91616 0.91732 0.87356 0.87007 0.88613 0.88735 0.86404 0.91487 0.85664 0.87121 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.67 8.75 37.16 0.33 -1.35 16 2 C -0.09 -1.00 2.91 -90.62 -0.26 -1.26 16 3 C -0.15 -1.33 9.19 37.16 0.34 -0.98 16 4 C -0.07 -0.84 4.83 -27.89 -0.13 -0.98 16 5 C -0.11 -1.72 4.72 -104.50 -0.49 -2.21 16 6 C -0.12 -1.94 9.68 -39.64 -0.38 -2.33 16 7 C -0.13 -2.43 9.55 -39.16 -0.37 -2.81 16 8 C 0.02 0.52 5.02 -104.90 -0.53 -0.01 16 9 C -0.24 -5.71 5.53 -104.07 -0.58 -6.28 16 10 C -0.03 -0.76 9.67 -38.98 -0.38 -1.13 16 11 C -0.32 -7.17 10.10 -39.22 -0.40 -7.57 16 12 C 0.13 3.16 11.17 -17.48 -0.20 2.97 16 13 N -0.48 -13.19 7.85 -10.91 -0.09 -13.27 16 14 C 0.27 7.18 6.56 -84.71 -0.56 6.62 16 15 C -0.42 -10.97 7.97 -37.89 -0.30 -11.27 16 16 H 0.10 2.37 5.25 -52.49 -0.28 2.09 16 17 C 0.07 1.70 5.50 -17.32 -0.10 1.61 16 18 N -0.71 -18.54 11.46 55.56 0.64 -17.90 16 19 Si 0.90 18.41 29.56 -169.99 -5.02 13.38 16 20 H -0.26 -5.18 7.11 56.52 0.40 -4.78 16 21 H -0.27 -5.41 7.11 56.52 0.40 -5.01 16 22 H -0.27 -5.47 7.11 56.52 0.40 -5.07 16 23 C -0.11 -2.15 7.57 -39.16 -0.30 -2.44 16 24 C -0.12 -1.99 7.93 -39.64 -0.31 -2.30 16 25 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 26 H 0.06 0.84 6.26 -51.93 -0.33 0.52 16 27 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 28 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 29 H 0.05 0.45 8.14 -51.92 -0.42 0.02 16 30 H 0.05 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.07 0.77 8.08 -51.93 -0.42 0.35 16 33 H 0.06 0.74 8.08 -51.93 -0.42 0.32 16 34 H 0.11 1.50 8.06 -52.49 -0.42 1.07 16 35 H 0.11 2.01 8.05 -52.49 -0.42 1.59 16 36 H 0.10 1.90 8.06 -52.49 -0.42 1.48 16 37 H 0.09 1.84 8.06 -52.49 -0.42 1.41 16 38 H 0.12 2.51 8.06 -52.48 -0.42 2.09 16 39 H 0.27 6.46 8.29 -40.82 -0.34 6.13 16 40 H 0.13 2.61 7.26 -52.48 -0.38 2.23 16 41 H 0.11 1.64 8.03 -52.48 -0.42 1.22 16 LS Contribution 337.26 15.07 5.08 5.08 Total: -1.00 -28.12 337.26 -10.04 -38.16 By element: Atomic # 1 Polarization: 12.30 SS G_CDS: -6.03 Total: 6.28 kcal Atomic # 6 Polarization: -27.11 SS G_CDS: -4.62 Total: -31.72 kcal Atomic # 7 Polarization: -31.72 SS G_CDS: 0.55 Total: -31.17 kcal Atomic # 14 Polarization: 18.41 SS G_CDS: -5.02 Total: 13.38 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -28.12 -10.04 -38.16 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241326234.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.648 kcal (2) G-P(sol) polarization free energy of solvation -28.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.037 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.156 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.493 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds