Wall clock time and date at job start Tue Mar 31 2020 05:17:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47275 * 2 1 4 4 C 1.52999 * 109.47245 * 120.00124 * 2 1 3 5 5 C 1.50705 * 109.47157 * 174.99665 * 4 2 1 6 6 C 1.38408 * 119.84144 * 90.00024 * 5 4 2 7 7 C 1.37921 * 120.14818 * 180.27562 * 6 5 4 8 8 C 1.39676 * 119.84358 * 359.47599 * 7 6 5 9 9 C 1.47853 * 120.14991 * 180.24936 * 8 7 6 10 10 C 1.39295 * 120.78280 * 129.97584 * 9 8 7 11 11 N 1.31680 * 120.66016 * 179.68082 * 10 9 8 12 12 C 1.32203 * 122.50087 * 0.63973 * 11 10 9 13 13 C 1.36488 * 121.50997 * 359.64946 * 12 11 10 14 14 C 1.41120 * 119.10474 * 0.02644 * 13 12 11 15 15 C 1.40934 * 121.10620 * 179.97438 * 14 13 12 16 16 H 1.08006 * 119.99408 * 154.59595 * 15 14 13 17 17 C 1.40180 * 120.00213 * 334.59882 * 15 14 13 18 18 N 1.30680 * 119.99744 * 344.36378 * 17 15 14 19 19 Si 1.86796 * 119.99814 * 164.35963 * 17 15 14 20 20 H 1.48500 * 109.47420 * 0.02562 * 19 17 15 21 21 H 1.48500 * 109.46755 * 120.00109 * 19 17 15 22 22 H 1.48499 * 109.47001 * 239.99718 * 19 17 15 23 23 C 1.39671 * 119.69964 * 0.50034 * 8 7 6 24 24 C 1.37913 * 119.84803 * 359.74899 * 23 8 7 25 25 H 1.08997 * 109.46861 * 299.99666 * 1 2 3 26 26 H 1.08992 * 109.47088 * 59.99851 * 1 2 3 27 27 H 1.09006 * 109.46918 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46955 * 239.99940 * 2 1 3 29 29 H 1.09003 * 109.46839 * 59.99652 * 3 2 1 30 30 H 1.08992 * 109.47414 * 179.97438 * 3 2 1 31 31 H 1.09000 * 109.47090 * 300.00742 * 3 2 1 32 32 H 1.09005 * 109.47173 * 55.00269 * 4 2 1 33 33 H 1.08994 * 109.47519 * 295.00150 * 4 2 1 34 34 H 1.07997 * 119.92513 * 0.02562 * 6 5 4 35 35 H 1.07992 * 120.07978 * 179.72572 * 7 6 5 36 36 H 1.08006 * 119.66904 * 359.97425 * 10 9 8 37 37 H 1.07998 * 119.24517 * 179.67526 * 12 11 10 38 38 H 1.08000 * 120.44941 * 180.02562 * 13 12 11 39 39 H 0.97000 * 119.99894 * 180.02562 * 18 17 15 40 40 H 1.07996 * 120.07656 * 179.76946 * 23 8 7 41 41 H 1.08004 * 119.92624 * 179.97438 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5420 -0.8295 1.1888 6 6 4.3271 0.1743 1.7290 7 6 5.7022 0.0845 1.6721 8 6 6.3021 -1.0279 1.0774 9 6 7.7756 -1.1338 1.0177 10 6 8.4247 -2.2926 1.4375 11 7 9.7368 -2.3866 1.3774 12 6 10.5000 -1.4017 0.9358 13 6 9.9647 -0.2220 0.5061 14 6 8.5640 -0.0526 0.5358 15 6 7.9664 1.1480 0.1027 16 1 6.9484 1.1449 -0.2582 17 6 8.6931 2.3461 0.1404 18 7 9.7912 2.4223 0.8448 19 14 8.0920 3.8335 -0.8164 20 1 6.8341 3.4899 -1.5269 21 1 7.8390 4.9564 0.1219 22 1 9.1248 4.2371 -1.8042 23 6 5.5037 -2.0373 0.5347 24 6 4.1299 -1.9322 0.5939 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8933 -0.5139 -0.8900 29 1 1.6766 1.9563 0.8900 30 1 3.1300 1.4425 0.0005 31 1 1.6766 1.9563 -0.8899 32 1 1.6055 -1.7199 1.2951 33 1 1.7517 -0.1584 2.1369 34 1 3.8619 1.0317 2.1924 35 1 6.3137 0.8704 2.0900 36 1 7.8457 -3.1240 1.8117 37 1 11.5717 -1.5337 0.9140 38 1 10.6043 0.5712 0.1482 39 1 10.2939 3.2515 0.8712 40 1 5.9611 -2.8983 0.0702 41 1 3.5112 -2.7118 0.1743 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241326644.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:08 Heat of formation + Delta-G solvation = 6.664680 kcal Electronic energy + Delta-G solvation = -21233.569830 eV Core-core repulsion = 18268.926453 eV Total energy + Delta-G solvation = -2964.643377 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.72879 -39.66032 -37.02539 -36.06524 -33.64611 -32.20407 -31.62180 -30.54045 -28.11410 -27.94606 -26.77986 -23.88596 -23.50385 -22.83533 -21.55607 -20.71625 -19.51441 -17.57868 -17.23850 -16.59077 -16.27736 -16.17286 -15.86054 -15.24483 -15.10433 -14.84166 -14.45235 -14.28234 -14.18803 -14.03849 -13.56569 -13.24708 -13.21328 -12.97074 -12.93948 -12.74305 -12.70146 -12.38044 -12.02218 -11.86436 -11.67338 -11.64201 -11.42606 -11.38832 -11.26813 -10.11083 -9.93052 -9.70444 -9.62707 -8.95580 -8.67407 -6.53948 0.30472 0.69970 0.94614 1.10064 1.34513 1.48498 1.50666 2.13358 2.72138 3.02454 3.69490 3.93742 3.97685 4.01910 4.16845 4.24595 4.26270 4.32257 4.47092 4.51676 4.68094 4.74471 4.83933 4.87830 4.93117 4.98565 5.01748 5.02309 5.13194 5.14918 5.19186 5.26056 5.35141 5.38708 5.43230 5.49318 5.54575 5.55100 5.69095 5.87059 5.88731 6.04562 6.19025 6.30733 6.50929 6.75955 6.80036 7.69054 8.18125 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.014613 B = 0.005850 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1915.651497 B = 4785.443070 C = 6418.630218 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.089 4.089 3 C -0.153 4.153 4 C -0.066 4.066 5 C -0.094 4.094 6 C -0.119 4.119 7 C -0.113 4.113 8 C -0.013 4.013 9 C -0.236 4.236 10 C 0.116 3.884 11 N -0.590 5.590 12 C 0.076 3.924 13 C -0.231 4.231 14 C 0.115 3.885 15 C -0.456 4.456 16 H 0.081 0.919 17 C 0.042 3.958 18 N -0.807 5.807 19 Si 0.975 3.025 20 H -0.259 1.259 21 H -0.262 1.262 22 H -0.261 1.261 23 C -0.132 4.132 24 C -0.117 4.117 25 H 0.060 0.940 26 H 0.056 0.944 27 H 0.062 0.938 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.039 0.961 31 H 0.054 0.946 32 H 0.084 0.916 33 H 0.076 0.924 34 H 0.129 0.871 35 H 0.098 0.902 36 H 0.144 0.856 37 H 0.141 0.859 38 H 0.115 0.885 39 H 0.294 0.706 40 H 0.118 0.882 41 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.213 -0.188 -1.491 15.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.108 4.108 3 C -0.210 4.210 4 C -0.103 4.103 5 C -0.094 4.094 6 C -0.136 4.136 7 C -0.132 4.132 8 C -0.014 4.014 9 C -0.241 4.241 10 C -0.041 4.041 11 N -0.305 5.305 12 C -0.072 4.072 13 C -0.254 4.254 14 C 0.107 3.893 15 C -0.486 4.486 16 H 0.099 0.901 17 C -0.176 4.176 18 N -0.432 5.432 19 Si 0.795 3.205 20 H -0.182 1.182 21 H -0.187 1.187 22 H -0.186 1.186 23 C -0.150 4.150 24 C -0.135 4.135 25 H 0.079 0.921 26 H 0.075 0.925 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.080 0.920 30 H 0.059 0.941 31 H 0.074 0.926 32 H 0.102 0.898 33 H 0.095 0.905 34 H 0.147 0.853 35 H 0.116 0.884 36 H 0.162 0.838 37 H 0.159 0.841 38 H 0.133 0.867 39 H 0.105 0.895 40 H 0.136 0.864 41 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -14.565 -0.806 -1.134 14.631 hybrid contribution 0.364 1.576 -0.532 1.703 sum -14.201 0.770 -1.667 14.319 Atomic orbital electron populations 1.21806 0.93630 1.02307 1.02135 1.21058 0.96408 0.95791 0.97504 1.21930 1.00651 0.96529 1.01872 1.20654 0.89161 1.01890 0.98629 1.20071 0.96626 0.94114 0.98615 1.21048 0.92417 0.99263 1.00913 1.21244 0.95059 0.97313 0.99537 1.18684 0.91290 0.94675 0.96747 1.19913 0.93267 0.98135 1.12828 1.22475 0.90509 0.95426 0.95659 1.67371 1.06625 1.32292 1.24175 1.22046 0.99125 0.89907 0.96143 1.21912 0.96359 0.98625 1.08468 1.18148 0.91844 0.92293 0.86991 1.19717 1.00281 0.91821 1.36817 0.90140 1.26794 0.93891 1.03289 0.93674 1.69781 1.14258 1.29623 1.29514 0.85245 0.79726 0.76635 0.78856 1.18213 1.18653 1.18562 1.21347 0.94202 0.98692 1.00743 1.21090 0.93710 0.98609 1.00099 0.92132 0.92460 0.91860 0.92063 0.92033 0.94144 0.92644 0.89766 0.90506 0.85342 0.88363 0.83846 0.84147 0.86670 0.89521 0.86377 0.84036 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.09 9.19 71.98 0.66 -1.43 16 2 C -0.09 -1.74 2.91 -10.79 -0.03 -1.77 16 3 C -0.15 -3.34 8.76 71.98 0.63 -2.71 16 4 C -0.07 -1.35 4.83 29.85 0.14 -1.21 16 5 C -0.09 -2.66 4.72 -19.78 -0.09 -2.75 16 6 C -0.12 -3.88 7.93 22.24 0.18 -3.70 16 7 C -0.11 -4.63 8.06 22.54 0.18 -4.45 16 8 C -0.01 -0.57 5.00 -20.04 -0.10 -0.67 16 9 C -0.24 -11.60 5.54 -19.49 -0.11 -11.71 16 10 C 0.12 5.49 10.72 84.97 0.91 6.40 16 11 N -0.59 -29.14 10.32 -196.20 -2.02 -31.16 16 12 C 0.08 3.75 11.09 84.23 0.93 4.68 16 13 C -0.23 -12.17 8.72 22.57 0.20 -11.98 16 14 C 0.12 6.13 5.59 -20.92 -0.12 6.01 16 15 C -0.46 -23.52 7.28 23.40 0.17 -23.35 16 16 H 0.08 4.14 6.69 -2.91 -0.02 4.12 16 17 C 0.04 2.01 5.21 85.34 0.44 2.45 16 18 N -0.81 -40.15 10.95 21.86 0.24 -39.91 16 19 Si 0.98 36.65 29.59 68.60 2.03 38.68 16 20 H -0.26 -9.70 7.11 99.48 0.71 -8.99 16 21 H -0.26 -9.39 7.11 99.48 0.71 -8.68 16 22 H -0.26 -9.41 7.11 99.48 0.71 -8.71 16 23 C -0.13 -4.75 9.55 22.54 0.22 -4.54 16 24 C -0.12 -3.46 9.68 22.23 0.22 -3.25 16 25 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 26 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 27 H 0.06 0.82 8.14 -2.38 -0.02 0.80 16 28 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.04 1.09 6.26 -2.39 -0.01 1.08 16 31 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 32 H 0.08 1.45 8.08 -2.38 -0.02 1.43 16 33 H 0.08 1.45 8.08 -2.39 -0.02 1.43 16 34 H 0.13 3.65 8.03 -2.91 -0.02 3.63 16 35 H 0.10 4.48 7.34 -2.91 -0.02 4.45 16 36 H 0.14 5.93 8.06 -2.91 -0.02 5.91 16 37 H 0.14 6.03 8.06 -2.91 -0.02 6.01 16 38 H 0.12 6.16 6.27 -2.91 -0.02 6.14 16 39 H 0.29 13.09 8.29 -92.71 -0.77 12.32 16 40 H 0.12 4.05 8.06 -2.91 -0.02 4.02 16 41 H 0.14 3.25 8.06 -2.91 -0.02 3.23 16 Total: -1.00 -58.71 337.10 5.68 -53.03 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: 1.01 Total: 33.34 kcal Atomic # 6 Polarization: -58.40 SS G_CDS: 4.43 Total: -53.96 kcal Atomic # 7 Polarization: -69.29 SS G_CDS: -1.78 Total: -71.08 kcal Atomic # 14 Polarization: 36.65 SS G_CDS: 2.03 Total: 38.68 kcal Total: -58.71 5.68 -53.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241326644.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.691 kcal (2) G-P(sol) polarization free energy of solvation -58.708 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.026 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds