Wall clock time and date at job start Tue Mar 31 2020 05:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53001 * 109.47046 * 2 1 4 4 C 1.52997 * 109.47051 * 120.00356 * 2 1 3 5 5 C 1.50699 * 109.47135 * 175.00097 * 4 2 1 6 6 C 1.38328 * 119.87794 * 89.99550 * 5 4 2 7 7 C 1.38009 * 120.11834 * 180.02562 * 6 5 4 8 8 C 1.39348 * 119.88258 * 359.97438 * 7 6 5 9 9 C 1.48383 * 120.12351 * 180.02562 * 8 7 6 10 10 C 1.40036 * 120.82218 * 0.02562 * 9 8 7 11 11 C 1.38511 * 119.42395 * 179.97438 * 10 9 8 12 12 N 1.31478 * 121.14406 * 0.02562 * 11 10 9 13 13 C 1.33647 * 121.79298 * 359.97438 * 12 11 10 14 14 C 1.41426 * 119.77696 * 179.97438 * 13 12 11 15 15 H 1.07997 * 119.99912 * 187.07025 * 14 13 12 16 16 C 1.40033 * 119.99947 * 7.07167 * 14 13 12 17 17 N 1.30741 * 120.00144 * 182.56910 * 16 14 13 18 18 Si 1.86809 * 120.00169 * 2.56807 * 16 14 13 19 19 H 1.48499 * 109.47093 * 179.97438 * 18 16 14 20 20 H 1.48495 * 109.46992 * 300.00230 * 18 16 14 21 21 H 1.48506 * 109.46797 * 59.99784 * 18 16 14 22 22 C 1.39302 * 120.82129 * 180.25959 * 9 8 7 23 23 C 1.39339 * 119.75254 * 0.27717 * 8 7 6 24 24 C 1.38021 * 119.87716 * 359.44435 * 23 8 7 25 25 H 1.08999 * 109.47452 * 300.00075 * 1 2 3 26 26 H 1.09005 * 109.47489 * 60.00087 * 1 2 3 27 27 H 1.09004 * 109.47429 * 179.97438 * 1 2 3 28 28 H 1.09001 * 109.46645 * 240.00351 * 2 1 3 29 29 H 1.09002 * 109.46878 * 299.99734 * 3 2 1 30 30 H 1.08999 * 109.47057 * 59.99683 * 3 2 1 31 31 H 1.09002 * 109.46982 * 180.02562 * 3 2 1 32 32 H 1.09000 * 109.47527 * 54.99775 * 4 2 1 33 33 H 1.09006 * 109.46806 * 294.99885 * 4 2 1 34 34 H 1.08001 * 119.93819 * 0.02562 * 6 5 4 35 35 H 1.07999 * 120.06212 * 180.02562 * 7 6 5 36 36 H 1.07996 * 120.28944 * 359.97438 * 10 9 8 37 37 H 1.07998 * 119.42664 * 179.97438 * 11 10 9 38 38 H 0.96999 * 119.99741 * 354.84870 * 17 16 14 39 39 H 1.08005 * 120.58299 * 0.02562 * 22 9 8 40 40 H 1.08005 * 120.06092 * 179.72486 * 23 8 7 41 41 H 1.08006 * 119.93680 * 180.27445 * 24 23 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5418 -0.8294 1.1888 6 6 4.3271 0.1733 1.7285 7 6 5.7030 0.0796 1.6755 8 6 6.3010 -1.0279 1.0775 9 6 7.7798 -1.1344 1.0181 10 6 8.5937 -0.1311 1.5586 11 6 9.9709 -0.2604 1.4876 12 7 10.5273 -1.3084 0.9212 13 6 9.7960 -2.2932 0.3906 14 6 10.4391 -3.4010 -0.2089 15 1 9.8578 -4.1412 -0.7385 16 6 11.8296 -3.5380 -0.1156 17 7 12.4297 -4.5347 -0.7121 18 14 12.8271 -2.2968 0.8611 19 1 14.2650 -2.6636 0.8054 20 1 12.6382 -0.9432 0.2805 21 1 12.3709 -2.2973 2.2743 22 6 8.3928 -2.2325 0.4190 23 6 5.5050 -2.0325 0.5309 24 6 4.1300 -1.9313 0.5945 25 1 -0.3634 0.5138 0.8899 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 -0.0005 28 1 1.8932 -0.5138 -0.8901 29 1 1.6766 1.9563 -0.8900 30 1 1.6766 1.9563 0.8899 31 1 3.1300 1.4425 -0.0005 32 1 1.6053 -1.7199 1.2951 33 1 1.7516 -0.1583 2.1369 34 1 3.8627 1.0311 2.1921 35 1 6.3153 0.8629 2.0975 36 1 8.1514 0.7358 2.0267 37 1 10.5986 0.5135 1.9041 38 1 11.9064 -5.2202 -1.1561 39 1 7.7997 -3.0250 -0.0129 40 1 5.9632 -2.8909 0.0622 41 1 3.5121 -2.7115 0.1750 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241326678.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:16:59 Heat of formation + Delta-G solvation = 12.061452 kcal Electronic energy + Delta-G solvation = -20572.826242 eV Core-core repulsion = 17608.416887 eV Total energy + Delta-G solvation = -2964.409355 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.64120 -38.42992 -36.33227 -33.90667 -32.71157 -31.05913 -30.26761 -29.79693 -27.34764 -26.26572 -25.59443 -22.90648 -22.47814 -20.95686 -20.47083 -19.96856 -18.30169 -16.61763 -15.64914 -15.51546 -15.16784 -14.66845 -14.45566 -14.29878 -13.95058 -13.57951 -13.37751 -13.16822 -12.93704 -12.54230 -12.44104 -12.32833 -12.19021 -12.10590 -11.94417 -11.45860 -11.21814 -11.07973 -10.83368 -10.72119 -10.60321 -10.34927 -10.06711 -9.62242 -9.39177 -9.29024 -8.72993 -8.02638 -7.72244 -7.66937 -7.26475 -4.82866 1.19130 1.61888 2.51368 2.71996 3.61770 3.66001 4.02403 4.07526 4.44610 4.62740 4.66241 4.67456 4.79207 5.01360 5.11290 5.15155 5.26663 5.33906 5.43317 5.48344 5.50000 5.62400 5.64237 5.67866 5.71144 5.71423 5.85508 5.89589 6.04379 6.12589 6.15605 6.17375 6.31846 6.41311 6.46371 6.56524 6.75551 6.79454 6.95522 7.11608 7.25091 7.37844 7.43937 7.64017 8.02891 8.24195 8.59024 9.43311 9.97447 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.037435 B = 0.003353 C = 0.003162 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 747.776321 B = 8348.126520 C = 8853.834648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.092 4.092 3 C -0.151 4.151 4 C -0.073 4.073 5 C -0.091 4.091 6 C -0.118 4.118 7 C -0.108 4.108 8 C -0.030 4.030 9 C 0.014 3.986 10 C -0.304 4.304 11 C 0.152 3.848 12 N -0.574 5.574 13 C 0.249 3.751 14 C -0.472 4.472 15 H 0.081 0.919 16 C 0.043 3.957 17 N -0.803 5.803 18 Si 1.156 2.844 19 H -0.333 1.333 20 H -0.279 1.279 21 H -0.293 1.293 22 C -0.242 4.242 23 C -0.108 4.108 24 C -0.119 4.119 25 H 0.053 0.947 26 H 0.053 0.947 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.051 0.949 30 H 0.052 0.948 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.069 0.931 34 H 0.117 0.883 35 H 0.125 0.875 36 H 0.106 0.894 37 H 0.129 0.871 38 H 0.283 0.717 39 H 0.108 0.892 40 H 0.125 0.875 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.840 8.004 2.916 20.676 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.110 4.110 3 C -0.208 4.208 4 C -0.111 4.111 5 C -0.091 4.091 6 C -0.136 4.136 7 C -0.126 4.126 8 C -0.030 4.030 9 C 0.008 3.992 10 C -0.327 4.327 11 C -0.009 4.009 12 N -0.293 5.293 13 C 0.127 3.873 14 C -0.504 4.504 15 H 0.099 0.901 16 C -0.179 4.179 17 N -0.425 5.425 18 Si 0.991 3.009 19 H -0.267 1.267 20 H -0.207 1.207 21 H -0.222 1.222 22 C -0.264 4.264 23 C -0.126 4.126 24 C -0.137 4.137 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.072 0.928 28 H 0.089 0.911 29 H 0.070 0.930 30 H 0.071 0.929 31 H 0.081 0.919 32 H 0.087 0.913 33 H 0.087 0.913 34 H 0.135 0.865 35 H 0.142 0.858 36 H 0.124 0.876 37 H 0.147 0.853 38 H 0.094 0.906 39 H 0.126 0.874 40 H 0.143 0.857 41 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -16.470 8.190 3.171 18.665 hybrid contribution -2.656 -0.554 -0.537 2.765 sum -19.125 7.636 2.634 20.761 Atomic orbital electron populations 1.21854 0.95297 1.01607 1.01672 1.21087 0.95175 0.96639 0.98142 1.21922 1.01994 0.95612 1.01275 1.20644 0.91381 1.00902 0.98124 1.19795 0.95183 0.94890 0.99276 1.20891 0.93374 0.98516 1.00825 1.21258 0.94397 0.97791 0.99204 1.19005 0.92705 0.94190 0.97066 1.18708 0.90135 0.94481 0.95858 1.21178 0.94213 1.02186 1.15166 1.22044 0.92171 0.94195 0.92483 1.66504 1.38421 1.04636 1.19778 1.18597 0.89081 0.90786 0.88874 1.20793 0.94935 1.05732 1.28908 0.90081 1.27861 0.96812 0.99381 0.93800 1.70656 1.40952 1.08636 1.22207 0.81794 0.69687 0.73804 0.75615 1.26667 1.20654 1.22151 1.21742 0.95303 0.99752 1.09594 1.21317 0.93253 0.98834 0.99180 1.20899 0.94513 0.97870 1.00404 0.92748 0.92748 0.92766 0.91109 0.93038 0.92890 0.91859 0.91270 0.91267 0.86463 0.85764 0.87561 0.85328 0.90608 0.87433 0.85712 0.86462 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.19 37.16 0.34 -0.72 16 2 C -0.09 -0.81 2.91 -90.62 -0.26 -1.07 16 3 C -0.15 -1.35 8.76 37.16 0.33 -1.02 16 4 C -0.07 -0.69 4.83 -27.89 -0.13 -0.83 16 5 C -0.09 -1.12 4.72 -104.56 -0.49 -1.62 16 6 C -0.12 -1.52 7.94 -39.63 -0.31 -1.83 16 7 C -0.11 -1.65 9.45 -39.25 -0.37 -2.02 16 8 C -0.03 -0.53 5.88 -104.90 -0.62 -1.14 16 9 C 0.01 0.29 5.90 -104.65 -0.62 -0.33 16 10 C -0.30 -6.21 9.52 -38.81 -0.37 -6.58 16 11 C 0.15 3.33 11.17 -17.60 -0.20 3.13 16 12 N -0.57 -14.62 4.54 -11.20 -0.05 -14.67 16 13 C 0.25 6.52 6.39 -85.02 -0.54 5.98 16 14 C -0.47 -12.90 9.58 -37.70 -0.36 -13.26 16 15 H 0.08 2.20 8.05 -52.49 -0.42 1.78 16 16 C 0.04 1.17 5.52 -17.34 -0.10 1.07 16 17 N -0.80 -21.98 13.65 55.55 0.76 -21.22 16 18 Si 1.16 28.61 25.56 -169.99 -4.34 24.26 16 19 H -0.33 -8.13 7.11 56.52 0.40 -7.73 16 20 H -0.28 -6.86 6.67 56.52 0.38 -6.48 16 21 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 22 C -0.24 -5.66 9.22 -38.34 -0.35 -6.01 16 23 C -0.11 -1.75 9.45 -39.25 -0.37 -2.12 16 24 C -0.12 -1.61 9.68 -39.63 -0.38 -1.99 16 25 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.37 8.14 -51.93 -0.42 -0.06 16 28 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 29 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.66 6.27 -51.93 -0.33 0.33 16 32 H 0.07 0.61 8.08 -51.93 -0.42 0.19 16 33 H 0.07 0.60 8.08 -51.93 -0.42 0.18 16 34 H 0.12 1.24 8.03 -52.49 -0.42 0.81 16 35 H 0.12 1.76 6.29 -52.49 -0.33 1.43 16 36 H 0.11 1.84 6.32 -52.49 -0.33 1.50 16 37 H 0.13 2.38 8.06 -52.49 -0.42 1.95 16 38 H 0.28 7.38 8.72 -40.82 -0.36 7.02 16 39 H 0.11 2.36 6.33 -52.48 -0.33 2.02 16 40 H 0.13 2.02 6.29 -52.48 -0.33 1.69 16 41 H 0.12 1.33 8.06 -52.48 -0.42 0.91 16 LS Contribution 332.17 15.07 5.01 5.01 Total: -1.00 -28.80 332.17 -9.34 -38.14 By element: Atomic # 1 Polarization: 4.75 SS G_CDS: -5.89 Total: -1.14 kcal Atomic # 6 Polarization: -25.55 SS G_CDS: -4.82 Total: -30.37 kcal Atomic # 7 Polarization: -36.60 SS G_CDS: 0.71 Total: -35.90 kcal Atomic # 14 Polarization: 28.61 SS G_CDS: -4.34 Total: 24.26 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -28.80 -9.34 -38.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241326678.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.204 kcal (2) G-P(sol) polarization free energy of solvation -28.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.061 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds