Wall clock time and date at job start Tue Mar 31 2020 05:17:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47245 * 2 1 4 4 C 1.52999 * 109.47295 * 120.00008 * 2 1 3 5 5 C 1.50704 * 109.47217 * 240.00237 * 2 1 3 6 6 C 1.33019 * 119.99721 * 359.97438 * 5 2 1 7 7 C 1.47246 * 119.99964 * 180.02562 * 6 5 2 8 8 N 1.31766 * 119.46346 * 359.97438 * 7 6 5 9 9 C 1.33587 * 121.73000 * 179.97438 * 8 7 6 10 10 C 1.40522 * 120.97232 * 180.02562 * 9 8 7 11 11 C 1.36224 * 119.70851 * 179.97438 * 10 9 8 12 12 C 1.39180 * 121.75467 * 359.97438 * 11 10 9 13 13 C 1.36125 * 121.47478 * 0.03666 * 12 11 10 14 14 C 1.40789 * 119.47096 * 359.96745 * 13 12 11 15 15 C 1.40001 * 121.37860 * 180.02562 * 14 13 12 16 16 C 1.40383 * 117.98637 * 179.69729 * 15 14 13 17 17 C 1.40765 * 120.42183 * 180.25547 * 16 15 14 18 18 H 1.08006 * 119.99641 * 149.90182 * 17 16 15 19 19 C 1.40108 * 120.00391 * 329.90722 * 17 16 15 20 20 N 1.30765 * 120.00222 * 162.17669 * 19 17 16 21 21 Si 1.86803 * 120.00022 * 342.17609 * 19 17 16 22 22 H 1.48500 * 109.46891 * 95.38552 * 21 19 17 23 23 H 1.48499 * 109.47217 * 215.38383 * 21 19 17 24 24 H 1.48496 * 109.46913 * 335.38433 * 21 19 17 25 25 H 1.09003 * 109.47262 * 59.99621 * 1 2 3 26 26 H 1.09003 * 109.46840 * 300.00342 * 1 2 3 27 27 H 1.08991 * 109.47074 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47008 * 59.99862 * 3 2 1 29 29 H 1.08997 * 109.46758 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46678 * 299.99926 * 3 2 1 31 31 H 1.09001 * 109.46786 * 59.99958 * 4 2 1 32 32 H 1.09003 * 109.47122 * 179.97438 * 4 2 1 33 33 H 1.09000 * 109.46974 * 300.00147 * 4 2 1 34 34 H 1.07999 * 120.00235 * 180.02562 * 5 2 1 35 35 H 1.07999 * 120.00045 * 0.02562 * 6 5 2 36 36 H 1.07998 * 120.14282 * 359.96356 * 10 9 8 37 37 H 1.07999 * 119.12327 * 179.97438 * 11 10 9 38 38 H 1.08006 * 119.26063 * 180.02562 * 12 11 10 39 39 H 1.07998 * 120.26288 * 179.97438 * 13 12 11 40 40 H 1.08008 * 121.01260 * 359.97438 * 15 14 13 41 41 H 0.96991 * 119.99898 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 2.0324 -0.7104 -1.2305 6 6 1.1679 -1.2163 -2.1059 7 6 1.6587 -1.9109 -3.3079 8 7 2.9564 -2.0247 -3.5062 9 6 3.4511 -2.6460 -4.5803 10 6 4.8381 -2.7587 -4.7757 11 6 5.3146 -3.3981 -5.8801 12 6 4.4620 -3.9500 -6.8318 13 6 3.1090 -3.8753 -6.7025 14 6 2.5550 -3.2268 -5.5824 15 6 1.1693 -3.1272 -5.4092 16 6 0.6942 -2.4710 -4.2627 17 6 -0.6892 -2.3463 -4.0346 18 1 -1.0686 -2.3086 -3.0241 19 6 -1.5740 -2.2711 -5.1183 20 7 -2.8482 -2.5044 -4.9395 21 14 -0.9335 -1.8377 -6.8187 22 1 -0.6754 -3.0845 -7.5830 23 1 -1.9444 -1.0186 -7.5346 24 1 0.3284 -1.0655 -6.6903 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6767 1.9564 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 -1.7489 1.2492 32 1 3.1301 -0.7216 1.2490 33 1 1.6767 -0.2074 2.1392 34 1 3.0942 -0.8094 -1.4012 35 1 0.1061 -1.1176 -1.9349 36 1 5.5233 -2.3401 -4.0534 37 1 6.3823 -3.4789 -6.0211 38 1 4.8835 -4.4486 -7.6923 39 1 2.4657 -4.3101 -7.4532 40 1 0.4864 -3.5466 -6.1333 41 1 -3.4606 -2.4527 -5.6899 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241562385.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:31 Heat of formation + Delta-G solvation = 35.543566 kcal Electronic energy + Delta-G solvation = -21284.092629 eV Core-core repulsion = 18320.701535 eV Total energy + Delta-G solvation = -2963.391094 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -39.18933 -37.61110 -36.08484 -34.19666 -32.28119 -31.56020 -29.88795 -28.29479 -27.02823 -27.01228 -25.49167 -23.77463 -21.81884 -20.99048 -20.39124 -18.26605 -17.73676 -16.55479 -16.17631 -15.44229 -14.87042 -14.72634 -13.92364 -13.90937 -13.59775 -13.50004 -13.22500 -12.92351 -12.75883 -12.26030 -12.16806 -12.11182 -11.78225 -11.45793 -11.43232 -11.35964 -11.16786 -11.01459 -10.72373 -10.69738 -10.47171 -10.36549 -10.34513 -9.84524 -9.68727 -9.15197 -8.88963 -8.34774 -7.47980 -7.30101 -7.17026 -4.71854 1.23105 1.80473 2.76886 2.91278 3.02021 3.10814 3.29786 3.78204 3.96375 4.53918 4.97403 5.10433 5.24765 5.24853 5.35778 5.47871 5.56519 5.62270 5.79227 5.80000 5.89387 5.92866 5.97771 6.02420 6.06580 6.09519 6.11514 6.20313 6.29921 6.35383 6.49809 6.52309 6.54422 6.61229 6.79121 6.89315 7.05624 7.18222 7.22590 7.30239 7.37958 7.52236 7.58995 7.72279 7.96866 8.24415 8.39335 9.07802 9.67662 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011709 B = 0.007114 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.793386 B = 3934.899889 C = 5957.326300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.038 4.038 3 C -0.135 4.135 4 C -0.135 4.135 5 C -0.141 4.141 6 C -0.091 4.091 7 C 0.133 3.867 8 N -0.458 5.458 9 C 0.025 3.975 10 C -0.057 4.057 11 C -0.181 4.181 12 C -0.107 4.107 13 C -0.147 4.147 14 C -0.021 4.021 15 C -0.262 4.262 16 C 0.056 3.944 17 C -0.402 4.402 18 H 0.103 0.897 19 C 0.083 3.917 20 N -0.780 5.780 21 Si 0.914 3.086 22 H -0.266 1.266 23 H -0.287 1.287 24 H -0.242 1.242 25 H 0.061 0.939 26 H 0.050 0.950 27 H 0.060 0.940 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.117 0.883 35 H 0.131 0.869 36 H 0.115 0.885 37 H 0.107 0.893 38 H 0.105 0.895 39 H 0.110 0.890 40 H 0.113 0.887 41 H 0.293 0.707 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.397 3.186 3.832 7.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.038 4.038 3 C -0.192 4.192 4 C -0.192 4.192 5 C -0.162 4.162 6 C -0.109 4.109 7 C -0.023 4.023 8 N -0.165 5.165 9 C -0.096 4.096 10 C -0.076 4.076 11 C -0.202 4.202 12 C -0.125 4.125 13 C -0.166 4.166 14 C -0.023 4.023 15 C -0.287 4.287 16 C 0.051 3.949 17 C -0.429 4.429 18 H 0.121 0.879 19 C -0.140 4.140 20 N -0.401 5.401 21 Si 0.740 3.260 22 H -0.192 1.192 23 H -0.214 1.214 24 H -0.165 1.165 25 H 0.080 0.920 26 H 0.069 0.931 27 H 0.079 0.921 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.072 0.928 33 H 0.070 0.930 34 H 0.135 0.865 35 H 0.149 0.851 36 H 0.133 0.867 37 H 0.125 0.875 38 H 0.123 0.877 39 H 0.128 0.872 40 H 0.130 0.870 41 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 5.782 3.449 4.290 7.983 hybrid contribution -0.560 -0.379 -1.554 1.695 sum 5.222 3.070 2.736 6.647 Atomic orbital electron populations 1.21975 0.94564 1.02236 1.01538 1.19585 0.95443 0.94898 0.93911 1.21805 1.00868 0.95167 1.01361 1.21803 1.00870 1.00328 0.96191 1.23299 0.99899 0.98602 0.94383 1.21690 0.99698 0.97560 0.91983 1.21371 0.87798 0.97446 0.95681 1.67488 1.14855 1.14709 1.19421 1.19319 0.92999 1.04250 0.92985 1.20515 0.92979 0.97342 0.96724 1.20278 0.98591 1.04688 0.96608 1.20503 0.93589 0.99892 0.98518 1.20835 0.94944 1.02890 0.97936 1.19515 0.93824 0.95335 0.93674 1.21039 0.92849 1.11661 1.03123 1.19367 0.93817 0.90239 0.91513 1.19542 0.89042 1.38067 0.96296 0.87941 1.26327 0.94422 0.91249 1.02042 1.69630 1.04387 1.30621 1.35463 0.86187 0.79992 0.80048 0.79789 1.19166 1.21387 1.16535 0.92013 0.93114 0.92090 0.92993 0.92775 0.92559 0.92578 0.92774 0.92987 0.86475 0.85106 0.86718 0.87507 0.87658 0.87167 0.86957 0.89629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.98 7.13 37.16 0.26 -1.72 16 2 C -0.04 -0.53 0.99 -155.65 -0.15 -0.69 16 3 C -0.13 -1.66 8.46 37.16 0.31 -1.35 16 4 C -0.13 -1.66 8.46 37.16 0.31 -1.34 16 5 C -0.14 -2.43 8.32 -36.12 -0.30 -2.73 16 6 C -0.09 -1.81 8.43 -37.73 -0.32 -2.13 16 7 C 0.13 3.10 6.89 -80.77 -0.56 2.55 16 8 N -0.46 -10.65 9.21 -4.95 -0.05 -10.70 16 9 C 0.02 0.58 6.75 -82.94 -0.56 0.02 16 10 C -0.06 -1.12 9.98 -39.45 -0.39 -1.52 16 11 C -0.18 -3.20 9.90 -39.96 -0.40 -3.60 16 12 C -0.11 -1.90 9.91 -39.99 -0.40 -2.30 16 13 C -0.15 -2.98 9.80 -39.38 -0.39 -3.37 16 14 C -0.02 -0.50 5.87 -104.97 -0.62 -1.11 16 15 C -0.26 -6.39 7.02 -38.11 -0.27 -6.66 16 16 C 0.06 1.39 5.26 -104.66 -0.55 0.83 16 17 C -0.40 -9.94 8.87 -37.93 -0.34 -10.27 16 18 H 0.10 2.55 6.92 -52.48 -0.36 2.19 16 19 C 0.08 2.00 5.42 -17.30 -0.09 1.91 16 20 N -0.78 -18.87 13.92 55.56 0.77 -18.10 16 21 Si 0.91 19.95 24.53 -169.99 -4.17 15.78 16 22 H -0.27 -5.68 6.71 56.52 0.38 -5.30 16 23 H -0.29 -5.96 7.11 56.52 0.40 -5.56 16 24 H -0.24 -5.63 6.85 56.52 0.39 -5.24 16 25 H 0.06 0.88 7.50 -51.93 -0.39 0.49 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.06 0.87 7.50 -51.93 -0.39 0.48 16 28 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 29 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 34 H 0.12 2.14 7.36 -52.49 -0.39 1.75 16 35 H 0.13 2.53 4.34 -52.49 -0.23 2.31 16 36 H 0.11 2.03 8.06 -52.49 -0.42 1.61 16 37 H 0.11 1.54 8.06 -52.49 -0.42 1.12 16 38 H 0.11 1.53 8.06 -52.48 -0.42 1.11 16 39 H 0.11 2.04 8.06 -52.49 -0.42 1.62 16 40 H 0.11 2.68 4.80 -52.48 -0.25 2.43 16 41 H 0.29 6.40 8.29 -40.82 -0.34 6.06 16 LS Contribution 331.71 15.07 5.00 5.00 Total: -1.00 -26.26 331.71 -8.70 -34.96 By element: Atomic # 1 Polarization: 12.35 SS G_CDS: -5.83 Total: 6.52 kcal Atomic # 6 Polarization: -29.04 SS G_CDS: -4.43 Total: -33.47 kcal Atomic # 7 Polarization: -29.53 SS G_CDS: 0.73 Total: -28.80 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -4.17 Total: 15.78 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -26.26 -8.70 -34.96 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241562385.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.508 kcal (2) G-P(sol) polarization free energy of solvation -26.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.965 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.544 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds