Wall clock time and date at job start Tue Mar 31 2020 05:17:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53008 * 109.47245 * 2 1 4 4 C 1.52999 * 109.47295 * 120.00008 * 2 1 3 5 5 C 1.50704 * 109.47217 * 240.00237 * 2 1 3 6 6 C 1.33019 * 119.99721 * 359.97438 * 5 2 1 7 7 C 1.47246 * 119.99964 * 180.02562 * 6 5 2 8 8 N 1.31766 * 119.46346 * 359.97438 * 7 6 5 9 9 C 1.33587 * 121.73000 * 179.97438 * 8 7 6 10 10 C 1.40522 * 120.97232 * 180.02562 * 9 8 7 11 11 C 1.36224 * 119.70851 * 179.97438 * 10 9 8 12 12 C 1.39180 * 121.75467 * 359.97438 * 11 10 9 13 13 C 1.36125 * 121.47478 * 0.03666 * 12 11 10 14 14 C 1.40789 * 119.47096 * 359.96745 * 13 12 11 15 15 C 1.40001 * 121.37860 * 180.02562 * 14 13 12 16 16 C 1.40383 * 117.98637 * 179.69729 * 15 14 13 17 17 C 1.40765 * 120.42183 * 180.25547 * 16 15 14 18 18 H 1.08006 * 119.99641 * 149.90182 * 17 16 15 19 19 C 1.40108 * 120.00391 * 329.90722 * 17 16 15 20 20 N 1.30765 * 120.00222 * 162.17669 * 19 17 16 21 21 Si 1.86803 * 120.00022 * 342.17609 * 19 17 16 22 22 H 1.48500 * 109.46891 * 95.38552 * 21 19 17 23 23 H 1.48499 * 109.47217 * 215.38383 * 21 19 17 24 24 H 1.48496 * 109.46913 * 335.38433 * 21 19 17 25 25 H 1.09003 * 109.47262 * 59.99621 * 1 2 3 26 26 H 1.09003 * 109.46840 * 300.00342 * 1 2 3 27 27 H 1.08991 * 109.47074 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47008 * 59.99862 * 3 2 1 29 29 H 1.08997 * 109.46758 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.46678 * 299.99926 * 3 2 1 31 31 H 1.09001 * 109.46786 * 59.99958 * 4 2 1 32 32 H 1.09003 * 109.47122 * 179.97438 * 4 2 1 33 33 H 1.09000 * 109.46974 * 300.00147 * 4 2 1 34 34 H 1.07999 * 120.00235 * 180.02562 * 5 2 1 35 35 H 1.07999 * 120.00045 * 0.02562 * 6 5 2 36 36 H 1.07998 * 120.14282 * 359.96356 * 10 9 8 37 37 H 1.07999 * 119.12327 * 179.97438 * 11 10 9 38 38 H 1.08006 * 119.26063 * 180.02562 * 12 11 10 39 39 H 1.07998 * 120.26288 * 179.97438 * 13 12 11 40 40 H 1.08008 * 121.01260 * 359.97438 * 15 14 13 41 41 H 0.96991 * 119.99898 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 2.0324 -0.7104 -1.2305 6 6 1.1679 -1.2163 -2.1059 7 6 1.6587 -1.9109 -3.3079 8 7 2.9564 -2.0247 -3.5062 9 6 3.4511 -2.6460 -4.5803 10 6 4.8381 -2.7587 -4.7757 11 6 5.3146 -3.3981 -5.8801 12 6 4.4620 -3.9500 -6.8318 13 6 3.1090 -3.8753 -6.7025 14 6 2.5550 -3.2268 -5.5824 15 6 1.1693 -3.1272 -5.4092 16 6 0.6942 -2.4710 -4.2627 17 6 -0.6892 -2.3463 -4.0346 18 1 -1.0686 -2.3086 -3.0241 19 6 -1.5740 -2.2711 -5.1183 20 7 -2.8482 -2.5044 -4.9395 21 14 -0.9335 -1.8377 -6.8187 22 1 -0.6754 -3.0845 -7.5830 23 1 -1.9444 -1.0186 -7.5346 24 1 0.3284 -1.0655 -6.6903 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 0.5139 0.8900 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6767 1.9564 0.8900 29 1 3.1300 1.4425 -0.0005 30 1 1.6767 1.9563 -0.8900 31 1 1.6767 -1.7489 1.2492 32 1 3.1301 -0.7216 1.2490 33 1 1.6767 -0.2074 2.1392 34 1 3.0942 -0.8094 -1.4012 35 1 0.1061 -1.1176 -1.9349 36 1 5.5233 -2.3401 -4.0534 37 1 6.3823 -3.4789 -6.0211 38 1 4.8835 -4.4486 -7.6923 39 1 2.4657 -4.3101 -7.4532 40 1 0.4864 -3.5466 -6.1333 41 1 -3.4606 -2.4527 -5.6899 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001241562385.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:17:30 Heat of formation + Delta-G solvation = 23.733537 kcal Electronic energy + Delta-G solvation = -21284.604750 eV Core-core repulsion = 18320.701535 eV Total energy + Delta-G solvation = -2963.903216 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.85571 -38.89238 -37.63324 -35.96287 -34.00631 -33.06245 -31.54037 -29.82048 -28.14427 -28.01554 -27.22366 -25.34700 -23.51564 -22.58490 -21.86555 -19.99730 -19.09297 -18.19825 -17.83461 -17.04101 -16.37583 -16.18972 -15.34981 -15.13852 -15.06576 -15.02260 -14.85491 -14.50745 -14.27956 -13.90290 -13.81876 -13.13263 -13.06722 -12.99755 -12.83555 -12.69203 -12.60432 -12.49763 -12.23016 -12.06757 -11.85538 -11.83932 -11.57343 -11.50738 -11.34234 -10.86942 -10.40346 -10.10818 -9.18690 -9.10793 -8.76138 -6.56416 -0.39331 0.11737 1.14720 1.20680 1.25046 1.34778 1.56729 2.02163 2.31513 2.79429 3.55216 3.58239 3.78757 3.89494 3.98837 4.15437 4.18438 4.22475 4.40580 4.50222 4.50762 4.53501 4.69144 4.80046 4.84587 4.84934 4.91682 4.95527 5.07136 5.07192 5.15177 5.21028 5.25351 5.31958 5.36240 5.43475 5.52032 5.57303 5.68946 5.74439 5.79953 5.87203 5.95277 6.11007 6.16412 6.47881 6.56774 7.31859 7.93038 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011709 B = 0.007114 C = 0.004699 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2390.793386 B = 3934.899889 C = 5957.326300 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.040 4.040 3 C -0.131 4.131 4 C -0.131 4.131 5 C -0.107 4.107 6 C -0.124 4.124 7 C 0.119 3.881 8 N -0.469 5.469 9 C 0.003 3.997 10 C -0.074 4.074 11 C -0.157 4.157 12 C -0.095 4.095 13 C -0.162 4.162 14 C -0.053 4.053 15 C -0.276 4.276 16 C 0.037 3.963 17 C -0.431 4.431 18 H 0.084 0.916 19 C 0.059 3.941 20 N -0.811 5.811 21 Si 0.957 3.043 22 H -0.259 1.259 23 H -0.268 1.268 24 H -0.269 1.269 25 H 0.047 0.953 26 H 0.076 0.924 27 H 0.047 0.953 28 H 0.077 0.923 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.045 0.955 32 H 0.059 0.941 33 H 0.077 0.923 34 H 0.110 0.890 35 H 0.128 0.872 36 H 0.133 0.867 37 H 0.153 0.847 38 H 0.150 0.850 39 H 0.123 0.877 40 H 0.110 0.890 41 H 0.302 0.698 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.293 3.419 3.569 9.654 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.040 4.040 3 C -0.189 4.189 4 C -0.188 4.188 5 C -0.128 4.128 6 C -0.142 4.142 7 C -0.037 4.037 8 N -0.176 5.176 9 C -0.117 4.117 10 C -0.093 4.093 11 C -0.177 4.177 12 C -0.113 4.113 13 C -0.181 4.181 14 C -0.055 4.055 15 C -0.301 4.301 16 C 0.032 3.968 17 C -0.459 4.459 18 H 0.102 0.898 19 C -0.161 4.161 20 N -0.434 5.434 21 Si 0.782 3.218 22 H -0.184 1.184 23 H -0.194 1.194 24 H -0.193 1.193 25 H 0.066 0.934 26 H 0.095 0.905 27 H 0.066 0.934 28 H 0.095 0.905 29 H 0.079 0.921 30 H 0.064 0.936 31 H 0.064 0.936 32 H 0.079 0.921 33 H 0.095 0.905 34 H 0.128 0.872 35 H 0.145 0.855 36 H 0.151 0.849 37 H 0.170 0.830 38 H 0.168 0.832 39 H 0.141 0.859 40 H 0.127 0.873 41 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 8.666 3.678 4.026 10.238 hybrid contribution -1.101 -0.494 -1.463 1.896 sum 7.565 3.184 2.563 8.598 Atomic orbital electron populations 1.21956 0.94469 1.01605 1.02134 1.19710 0.95588 0.95891 0.92859 1.21783 1.01262 0.93662 1.02155 1.21780 1.01261 0.99787 0.96013 1.23582 0.99028 0.95742 0.94484 1.21623 1.00022 1.00153 0.92429 1.21797 0.87891 0.97510 0.96495 1.67553 1.14575 1.15485 1.20008 1.19946 0.94728 1.04153 0.92906 1.20837 0.91645 0.98408 0.98413 1.20860 1.00981 1.01227 0.94643 1.21032 0.92441 0.98262 0.99527 1.21107 0.96683 1.02953 0.97344 1.19856 0.93559 0.96691 0.95366 1.21174 0.93813 1.11940 1.03170 1.19581 0.94082 0.90735 0.92387 1.19442 0.89588 1.40971 0.95852 0.89778 1.26728 0.94500 0.91070 1.03764 1.69623 1.04896 1.32291 1.36569 0.85555 0.78675 0.79848 0.77768 1.18406 1.19373 1.19333 0.93389 0.90492 0.93438 0.90455 0.92147 0.93583 0.93595 0.92147 0.90455 0.87223 0.85463 0.84870 0.82959 0.83193 0.85883 0.87282 0.88658 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.91 7.13 71.98 0.51 -3.39 16 2 C -0.04 -1.08 0.99 -52.92 -0.05 -1.13 16 3 C -0.13 -2.98 8.46 71.98 0.61 -2.37 16 4 C -0.13 -2.97 8.46 71.98 0.61 -2.36 16 5 C -0.11 -3.76 8.32 24.52 0.20 -3.55 16 6 C -0.12 -5.21 8.43 23.48 0.20 -5.01 16 7 C 0.12 5.82 6.89 43.77 0.30 6.12 16 8 N -0.47 -22.35 9.21 -169.56 -1.56 -23.91 16 9 C 0.00 0.15 6.75 41.57 0.28 0.43 16 10 C -0.07 -2.76 9.98 22.36 0.22 -2.53 16 11 C -0.16 -4.81 9.90 22.03 0.22 -4.59 16 12 C -0.09 -2.96 9.91 22.00 0.22 -2.74 16 13 C -0.16 -6.27 9.80 22.40 0.22 -6.05 16 14 C -0.05 -2.48 5.87 -20.09 -0.12 -2.59 16 15 C -0.28 -13.98 7.02 23.22 0.16 -13.82 16 16 C 0.04 1.95 5.26 -19.89 -0.10 1.85 16 17 C -0.43 -22.85 8.87 23.34 0.21 -22.64 16 18 H 0.08 4.60 6.92 -2.91 -0.02 4.58 16 19 C 0.06 3.02 5.42 85.31 0.46 3.48 16 20 N -0.81 -41.00 13.92 21.86 0.30 -40.69 16 21 Si 0.96 42.46 24.53 68.60 1.68 44.14 16 22 H -0.26 -11.00 6.71 99.48 0.67 -10.33 16 23 H -0.27 -10.86 7.11 99.48 0.71 -10.15 16 24 H -0.27 -12.95 6.85 99.48 0.68 -12.27 16 25 H 0.05 1.41 7.50 -2.39 -0.02 1.39 16 26 H 0.08 1.66 8.14 -2.39 -0.02 1.64 16 27 H 0.05 1.39 7.50 -2.39 -0.02 1.38 16 28 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 30 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 31 H 0.04 1.13 8.14 -2.39 -0.02 1.11 16 32 H 0.06 1.29 8.14 -2.39 -0.02 1.27 16 33 H 0.08 1.39 8.14 -2.39 -0.02 1.37 16 34 H 0.11 4.02 7.36 -2.91 -0.02 4.00 16 35 H 0.13 5.37 4.34 -2.91 -0.01 5.36 16 36 H 0.13 4.35 8.06 -2.91 -0.02 4.33 16 37 H 0.15 3.35 8.06 -2.91 -0.02 3.33 16 38 H 0.15 3.40 8.06 -2.91 -0.02 3.38 16 39 H 0.12 4.34 8.06 -2.91 -0.02 4.31 16 40 H 0.11 5.41 4.80 -2.91 -0.01 5.40 16 41 H 0.30 13.63 8.29 -92.72 -0.77 12.87 16 Total: -1.00 -60.17 331.71 5.53 -54.64 By element: Atomic # 1 Polarization: 25.76 SS G_CDS: 0.95 Total: 26.71 kcal Atomic # 6 Polarization: -65.05 SS G_CDS: 4.15 Total: -60.90 kcal Atomic # 7 Polarization: -63.34 SS G_CDS: -1.26 Total: -64.60 kcal Atomic # 14 Polarization: 42.46 SS G_CDS: 1.68 Total: 44.14 kcal Total: -60.17 5.53 -54.64 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241562385.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.375 kcal (2) G-P(sol) polarization free energy of solvation -60.171 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.642 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.734 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds