Wall clock time and date at job start Tue Mar 31 2020 05:04:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38866 * 119.24792 * 2 1 4 4 C 1.36888 * 119.79915 * 179.97438 * 3 2 1 5 5 C 1.41121 * 118.39317 * 359.97438 * 4 3 2 6 6 C 1.40887 * 120.72041 * 180.02562 * 5 4 3 7 7 H 1.07997 * 120.00499 * 153.87226 * 6 5 4 8 8 C 1.40073 * 119.99733 * 333.87213 * 6 5 4 9 9 N 1.30768 * 119.99994 * 343.73846 * 8 6 5 10 10 Si 1.86806 * 120.00065 * 163.74053 * 8 6 5 11 11 H 1.48501 * 109.47033 * 359.97438 * 10 8 6 12 12 H 1.48492 * 109.47029 * 119.99871 * 10 8 6 13 13 H 1.48499 * 109.47079 * 240.00161 * 10 8 6 14 14 C 1.41866 * 118.56652 * 0.02562 * 5 4 3 15 15 C 1.47816 * 119.99496 * 180.02562 * 14 5 4 16 16 C 1.39692 * 120.15229 * 308.21696 * 15 14 5 17 17 C 1.37898 * 119.84825 * 179.79126 * 16 15 14 18 18 C 1.50697 * 119.92670 * 180.25754 * 17 16 15 19 19 C 1.38419 * 120.14944 * 0.48903 * 17 16 15 20 20 C 1.50701 * 119.84784 * 179.72273 * 19 17 16 21 21 C 1.38378 * 120.31078 * 359.74381 * 19 17 16 22 22 C 1.37950 * 120.14862 * 0.02562 * 21 19 17 23 23 C 1.50695 * 120.07501 * 180.02562 * 22 21 19 24 24 N 1.31744 * 119.24320 * 179.72574 * 2 1 3 25 25 H 1.08994 * 109.47024 * 90.00377 * 1 2 3 26 26 H 1.08995 * 109.46893 * 330.00176 * 1 2 3 27 27 H 1.09007 * 109.47188 * 210.00215 * 1 2 3 28 28 H 1.07994 * 120.10105 * 359.97438 * 3 2 1 29 29 H 1.07993 * 120.80440 * 180.02562 * 4 3 2 30 30 H 0.97005 * 119.99896 * 179.97438 * 9 8 6 31 31 H 1.07999 * 120.07448 * 0.02562 * 16 15 14 32 32 H 1.09000 * 109.46800 * 270.23472 * 18 17 16 33 33 H 1.08994 * 109.47246 * 30.22772 * 18 17 16 34 34 H 1.08995 * 109.47495 * 150.23219 * 18 17 16 35 35 H 1.08996 * 109.47398 * 270.02419 * 20 19 17 36 36 H 1.09003 * 109.47197 * 30.02291 * 20 19 17 37 37 H 1.08996 * 109.47216 * 150.01774 * 20 19 17 38 38 H 1.07997 * 119.92928 * 180.02562 * 21 19 17 39 39 H 1.09008 * 109.47019 * 267.64055 * 23 22 21 40 40 H 1.08989 * 109.47361 * 27.64445 * 23 22 21 41 41 H 1.09000 * 109.46652 * 147.64675 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1855 1.2116 0.0000 4 6 3.5543 1.2248 0.0005 5 6 4.2373 -0.0101 0.0016 6 6 5.6455 -0.0538 0.0027 7 1 6.1589 -0.9096 0.4154 8 6 6.3796 1.0129 -0.5314 9 7 5.7924 1.8879 -1.3057 10 14 8.1975 1.1854 -0.1376 11 1 8.6184 0.0750 0.7540 12 1 8.9836 1.1351 -1.3965 13 1 8.4356 2.4835 0.5431 14 6 3.4753 -1.2068 0.0016 15 6 4.1582 -2.5177 0.0033 16 6 5.1462 -2.7954 -0.9444 17 6 5.7823 -4.0189 -0.9344 18 6 6.8524 -4.3182 -1.9523 19 6 5.4366 -4.9745 0.0055 20 6 6.1318 -6.3116 0.0063 21 6 4.4554 -4.7080 0.9442 22 6 3.8143 -3.4865 0.9486 23 6 2.7465 -3.1978 1.9719 24 7 2.1506 -1.1495 0.0055 25 1 -0.3633 -0.0001 -1.0276 26 1 -0.3633 0.8900 0.5138 27 1 -0.3634 -0.8900 0.5139 28 1 1.6349 2.1407 -0.0004 29 1 4.0984 2.1576 0.0010 30 1 6.3008 2.6268 -1.6753 31 1 5.4139 -2.0522 -1.6809 32 1 6.3976 -4.7621 -2.8378 33 1 7.3594 -3.3939 -2.2290 34 1 7.5742 -5.0151 -1.5264 35 1 5.5863 -7.0051 -0.6336 36 1 7.1480 -6.1930 -0.3697 37 1 6.1640 -6.7037 1.0228 38 1 4.1909 -5.4579 1.6750 39 1 1.7709 -3.4614 1.5633 40 1 2.9352 -3.7860 2.8699 41 1 2.7608 -2.1371 2.2226 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001241626448.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:04:48 Heat of formation + Delta-G solvation = 22.125932 kcal Electronic energy + Delta-G solvation = -21782.029771 eV Core-core repulsion = 18818.056845 eV Total energy + Delta-G solvation = -2963.972927 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 281.148 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -39.33809 -38.07466 -34.35658 -33.91746 -32.13511 -30.93040 -30.38885 -28.73487 -27.80321 -26.58734 -24.62666 -23.77681 -21.84347 -21.26321 -20.39349 -18.80301 -17.37365 -15.65773 -15.40641 -15.22787 -14.38660 -14.25000 -13.96216 -13.87117 -13.23608 -13.17767 -12.71630 -12.54966 -12.45499 -12.43914 -12.15714 -11.83952 -11.73539 -11.60777 -11.50509 -11.45211 -11.29682 -11.03224 -10.97284 -10.65745 -10.59773 -10.35816 -10.21986 -9.74668 -9.41742 -8.42097 -8.04250 -7.88392 -7.77306 -7.25242 -6.89789 -4.49712 1.89738 2.14817 2.59861 2.94350 2.98550 3.04862 3.13506 3.80079 4.41196 4.52435 5.29869 5.34807 5.40057 5.53169 5.58863 5.67354 5.80256 5.85340 5.90159 6.02049 6.06318 6.10298 6.14412 6.20533 6.28447 6.37649 6.39286 6.42370 6.51039 6.53037 6.63901 6.76440 6.85177 6.94800 6.96255 7.05410 7.09150 7.23981 7.34705 7.54494 7.66935 7.73914 7.90076 7.92850 8.38464 8.59384 8.67375 9.60150 9.96560 Molecular weight = 281.15amu Principal moments of inertia in cm(-1) A = 0.011029 B = 0.008665 C = 0.005356 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2538.145901 B = 3230.686977 C = 5226.639405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 C -0.013 4.013 3 C -0.143 4.143 4 C -0.131 4.131 5 C 0.083 3.917 6 C -0.436 4.436 7 H 0.088 0.912 8 C 0.075 3.925 9 N -0.785 5.785 10 Si 0.906 3.094 11 H -0.256 1.256 12 H -0.272 1.272 13 H -0.270 1.270 14 C 0.020 3.980 15 C 0.024 3.976 16 C -0.084 4.084 17 C -0.104 4.104 18 C -0.110 4.110 19 C -0.107 4.107 20 C -0.108 4.108 21 C -0.127 4.127 22 C -0.079 4.079 23 C -0.095 4.095 24 N -0.444 5.444 25 H 0.048 0.952 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.097 0.903 29 H 0.125 0.875 30 H 0.284 0.716 31 H 0.126 0.874 32 H 0.061 0.939 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.061 0.939 36 H 0.064 0.936 37 H 0.057 0.943 38 H 0.110 0.890 39 H 0.066 0.934 40 H 0.046 0.954 41 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.935 -6.852 1.469 7.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.155 4.155 3 C -0.163 4.163 4 C -0.156 4.156 5 C 0.078 3.922 6 C -0.465 4.465 7 H 0.106 0.894 8 C -0.144 4.144 9 N -0.409 5.409 10 Si 0.730 3.270 11 H -0.180 1.180 12 H -0.197 1.197 13 H -0.195 1.195 14 C -0.119 4.119 15 C 0.023 3.977 16 C -0.103 4.103 17 C -0.104 4.104 18 C -0.167 4.167 19 C -0.107 4.107 20 C -0.165 4.165 21 C -0.145 4.145 22 C -0.080 4.080 23 C -0.151 4.151 24 N -0.152 5.152 25 H 0.067 0.933 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.115 0.885 29 H 0.143 0.857 30 H 0.095 0.905 31 H 0.144 0.856 32 H 0.080 0.920 33 H 0.082 0.918 34 H 0.081 0.919 35 H 0.079 0.921 36 H 0.083 0.917 37 H 0.076 0.924 38 H 0.128 0.872 39 H 0.085 0.915 40 H 0.065 0.935 41 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 0.506 -7.390 1.327 7.525 hybrid contribution 1.293 1.230 0.015 1.785 sum 1.799 -6.160 1.342 6.556 Atomic orbital electron populations 1.20266 0.91649 1.00715 1.00399 1.20235 0.94776 0.88589 1.11862 1.21228 0.95403 0.97094 1.02563 1.21363 0.92614 0.98731 1.02938 1.18333 0.94095 0.90812 0.88927 1.19613 0.91017 1.03084 1.32745 0.89436 1.26003 1.01452 0.94351 0.92623 1.69776 1.38871 1.11119 1.21162 0.86263 0.81546 0.79629 0.79571 1.17973 1.19680 1.19530 1.19393 0.88272 0.91185 1.13026 1.18272 0.94296 0.91566 0.93577 1.21167 0.95482 0.95393 0.98259 1.19516 0.98968 0.94197 0.97683 1.20771 0.96766 1.01880 0.97273 1.19554 0.98448 0.95769 0.96925 1.20749 0.99887 0.94255 1.01572 1.20603 0.97783 0.96478 0.99616 1.19961 0.97647 0.93394 0.96978 1.20581 0.96980 1.02008 0.95567 1.66900 1.09574 1.29032 1.09682 0.93295 0.93034 0.92664 0.88499 0.85745 0.90507 0.85590 0.91996 0.91820 0.91894 0.92056 0.91742 0.92419 0.87190 0.91487 0.93518 0.91623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.31 10.15 36.01 0.37 -0.95 16 2 C -0.01 -0.30 6.79 -82.40 -0.56 -0.86 16 3 C -0.14 -3.28 9.64 -39.84 -0.38 -3.66 16 4 C -0.13 -3.28 8.74 -38.98 -0.34 -3.62 16 5 C 0.08 2.14 5.56 -106.41 -0.59 1.55 16 6 C -0.44 -10.94 7.25 -37.89 -0.27 -11.21 16 7 H 0.09 2.20 6.69 -52.49 -0.35 1.85 16 8 C 0.08 1.78 5.18 -17.32 -0.09 1.69 16 9 N -0.79 -19.13 11.01 55.55 0.61 -18.52 16 10 Si 0.91 17.93 29.59 -169.99 -5.03 12.90 16 11 H -0.26 -5.11 7.11 56.52 0.40 -4.70 16 12 H -0.27 -5.27 7.11 56.52 0.40 -4.87 16 13 H -0.27 -5.26 7.11 56.52 0.40 -4.86 16 14 C 0.02 0.49 5.36 -82.24 -0.44 0.05 16 15 C 0.02 0.54 5.00 -104.91 -0.52 0.01 16 16 C -0.08 -1.79 7.70 -39.16 -0.30 -2.10 16 17 C -0.10 -1.88 5.87 -104.68 -0.61 -2.50 16 18 C -0.11 -1.62 9.59 36.00 0.35 -1.27 16 19 C -0.11 -1.81 5.89 -104.50 -0.62 -2.42 16 20 C -0.11 -1.39 9.59 36.01 0.35 -1.04 16 21 C -0.13 -2.25 9.33 -39.64 -0.37 -2.62 16 22 C -0.08 -1.60 5.91 -104.20 -0.62 -2.22 16 23 C -0.09 -1.77 8.91 36.00 0.32 -1.45 16 24 N -0.44 -10.73 8.87 -5.45 -0.05 -10.78 16 25 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 26 H 0.05 0.81 8.07 -51.93 -0.42 0.39 16 27 H 0.05 0.96 8.14 -51.93 -0.42 0.53 16 28 H 0.10 1.95 8.06 -52.49 -0.42 1.53 16 29 H 0.12 3.16 6.33 -52.49 -0.33 2.83 16 30 H 0.28 6.27 8.29 -40.82 -0.34 5.93 16 31 H 0.13 2.83 7.45 -52.49 -0.39 2.44 16 32 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.94 8.08 -51.93 -0.42 0.52 16 34 H 0.06 0.79 5.93 -51.93 -0.31 0.48 16 35 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 36 H 0.06 0.75 5.93 -51.93 -0.31 0.45 16 37 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 38 H 0.11 1.66 8.06 -52.49 -0.42 1.24 16 39 H 0.07 1.23 8.14 -51.92 -0.42 0.81 16 40 H 0.05 0.73 8.07 -51.94 -0.42 0.32 16 41 H 0.06 1.37 6.90 -51.93 -0.36 1.01 16 LS Contribution 333.91 15.07 5.03 5.03 Total: -1.00 -27.13 333.91 -9.60 -36.73 By element: Atomic # 1 Polarization: 13.07 SS G_CDS: -5.82 Total: 7.25 kcal Atomic # 6 Polarization: -28.27 SS G_CDS: -4.35 Total: -32.61 kcal Atomic # 7 Polarization: -29.86 SS G_CDS: 0.56 Total: -29.30 kcal Atomic # 14 Polarization: 17.93 SS G_CDS: -5.03 Total: 12.90 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -27.13 -9.60 -36.73 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001241626448.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.857 kcal (2) G-P(sol) polarization free energy of solvation -27.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.726 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.731 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds